Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

3577033 .. 3578408

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG050000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTGTTCAATTGGGTGTCCACAGTATGGAAATTCCTTCCCCCTGTCCTGACTGTTCTTGAAGCTGATGCTTCTGTGAATGTTTCATATTACTTCAGAAAGCCATGTGCCAATGATATAGTTATCTTTAAAAGTCCACCGGTCCTTCAGGAAGTAGGATATACTGACCTTGACGTCTTCATTAAGCGAATAGTGGCGAAGGAAGGTGATACCGTAGAGGTCCACAATGGGAAGCTCATAGTTAATGGGGTGGAGAGAGATGAAAAATTCATCCTTGAACCACCTTCTTATAATATGACGCCTATTACTGTGCCAGAGAACTCTGTTTTTGTGATGGGTGACAATAGAAATAACAGCTATGATTCACACGTATGGGGTCCACTGCCAGCCAAGAACATTTTAGGCCGATCTATCTTTCGGTACTGGCCCCTGAAAAGGATTGGCGCCACGGTTCTTGAGACCGGTTGTGCTGTTGACAAGCAGGAGAGCGTTCCAGCGTCTCAACCAAAGGAAGGTGGATCATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

176

Amino Acids

19.7

Weight (kDa)

5.72

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	27 - 142	1.3e-29	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AasI	GACNNNNNNGTC	1 cut(s)	173
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	27
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	2 cut(s)	32, 266
AcuI	CTGAAG	2 cut(s)	79, 131
AcyI	GRCGYC	3 cut(s)	174, 299, 444
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	27, 435, 512
AflIII	ACRYGT	1 cut(s)	367
AgeI	ACCGGT	2 cut(s)	139, 461
AgsI	TTSAA	4 cut(s)	10, 62, 278, 526
AluBI	AGCT	3 cut(s)	65, 235, 357
AluI	AGCT	3 cut(s)	65, 235, 357
Alw26I	GTCTC	2 cut(s)	452, 504
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	2 cut(s)	403, 425
ApoI	RAATTY	2 cut(s)	32, 266
AsiGI	ACCGGT	2 cut(s)	139, 461
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	4 cut(s)	142, 220, 377, 426
AsuHPI	GGTGA	2 cut(s)	218, 350
AvaII	GGWCC	3 cut(s)	142, 220, 377
BanI	GGYRCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	169
BccI	CCATC	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	452, 504
BfoI	RGCGCY	1 cut(s)	447
Bme18I	GGWCC	3 cut(s)	142, 220, 377
BmgT120I	GGNCC	4 cut(s)	142, 220, 377, 426
BmiI	GGNNCC	3 cut(s)	378, 428, 445
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	370
BsaHI	GRCGYC	3 cut(s)	174, 299, 444
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	2 cut(s)	139, 461
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 435, 512
Bse118I	RCCGGY	2 cut(s)	139, 461
Bse1I	ACTGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	27, 435, 512
BseNI	ACTGG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	405, 427
BshNI	GGYRCC	1 cut(s)	443
BshTI	ACCGGT	2 cut(s)	139, 461
BsiSI	CCGG	2 cut(s)	140, 462
BslI	CCNNNNNNNGG	3 cut(s)	27, 435, 512
BsmAI	GTCTC	2 cut(s)	452, 504
BsmBI	CGTCTC	1 cut(s)	504
BsnI	GGCC	2 cut(s)	405, 427
Bso31I	GGTCTC	1 cut(s)	452
Bsp143I	GATC	2 cut(s)	407, 518
BspANI	GGCC	2 cut(s)	405, 427
BspLI	GGNNCC	3 cut(s)	378, 428, 445
BspPI	GGATC	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	139, 461
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	2 cut(s)	139, 461
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	2 cut(s)	407, 518
BssNI	GRCGYC	3 cut(s)	174, 299, 444
Bst4CI	ACNGT	5 cut(s)	25, 55, 214, 310, 451
BstACI	GRCGYC	3 cut(s)	174, 299, 444
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	2 cut(s)	410, 521
BstMAI	GTCTC	2 cut(s)	452, 504
BstMBI	GATC	2 cut(s)	407, 518
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	405, 427
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	2 cut(s)	139, 461
Cfr13I	GGNCC	4 cut(s)	142, 220, 377, 426
CseI	GACGC	2 cut(s)	307, 486
Csp6I	GTAC	1 cut(s)	421
CspAI	ACCGGT	2 cut(s)	139, 461
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	7 cut(s)	65, 103, 235, 357, 389, 405, 427
CviKI_1	RGCY	7 cut(s)	65, 103, 235, 357, 389, 405, 427
CviQI	GTAC	1 cut(s)	421
DinI	GGCGCC	1 cut(s)	445
DpnI	GATC	2 cut(s)	409, 520
DpnII	GATC	2 cut(s)	407, 518
DraI	TTTAAA	1 cut(s)	130
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	3 cut(s)	142, 220, 377
Eco57I	CTGAAG	2 cut(s)	79, 131
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	1 cut(s)	108
FatI	CATG	1 cut(s)	104
FokI	GGATG	1 cut(s)	257
GlaI	GCGC	1 cut(s)	445
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	405, 427
HapII	CCGG	2 cut(s)	140, 462
HgaI	GACGC	2 cut(s)	307, 486
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	3 cut(s)	174, 299, 444
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	2 cut(s)	140, 462
HphI	GGTGA	2 cut(s)	218, 350
Hpy166II	GTNNAC	5 cut(s)	21, 137, 223, 380, 475
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	4 cut(s)	49, 59, 149, 455
Hpy8I	GTNNAC	5 cut(s)	21, 137, 223, 380, 475
HpyAV	CCTTC	6 cut(s)	47, 155, 193, 197, 294, 506
HpyCH4III	ACNGT	5 cut(s)	25, 55, 214, 310, 451
HpyCH4IV	ACGT	2 cut(s)	174, 369
HpySE526I	ACGT	2 cut(s)	174, 369
Hsp92I	GRCGYC	3 cut(s)	174, 299, 444
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	1 cut(s)	444
KasI	GGCGCC	1 cut(s)	443
Kzo9I	GATC	2 cut(s)	407, 518
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	2 cut(s)	174, 369
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	2 cut(s)	409, 520
MboI	GATC	2 cut(s)	407, 518
MboII	GAAGA	1 cut(s)	169
MfeI	CAATTG	1 cut(s)	10
MluCI	AATT	4 cut(s)	10, 32, 266, 526
Mly113I	GGCGCC	1 cut(s)	444
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	3 cut(s)	129, 183, 243
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	2 cut(s)	140, 462
MunI	CAATTG	1 cut(s)	10
NarI	GGCGCC	1 cut(s)	444
NdeII	GATC	2 cut(s)	407, 518
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	3 cut(s)	378, 428, 445
NmuCI	GTSAC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	27
PinAI	ACCGGT	2 cut(s)	139, 461
PluTI	GGCGCC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	370
PsiI	TTATAA	1 cut(s)	291
PspN4I	GGNNCC	3 cut(s)	378, 428, 445
PspPI	GGNCC	4 cut(s)	142, 220, 377, 426
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	129, 183, 243
Sau3AI	GATC	2 cut(s)	407, 518
Sau96I	GGNCC	4 cut(s)	142, 220, 377, 426
SfaNI	GCATC	1 cut(s)	58
SfoI	GGCGCC	1 cut(s)	445
SinI	GGWCC	3 cut(s)	142, 220, 377
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	4 cut(s)	10, 32, 266, 526
SspDI	GGCGCC	1 cut(s)	443
TaaI	ACNGT	5 cut(s)	25, 55, 214, 310, 451
TaiI	ACGT	2 cut(s)	177, 372
TasI	AATT	4 cut(s)	10, 32, 266, 526
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	3 cut(s)	129, 183, 243
Tru9I	TTAA	3 cut(s)	129, 183, 243
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	75, 169, 259, 276
TspRI	CASTG	1 cut(s)	387
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	3 cut(s)	142, 220, 377
XapI	RAATTY	2 cut(s)	32, 266
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.