Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007981.1

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1133

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgctctctctacagttcttccctccattaccttccctccaaaaccctaatcccgaccacacccacttctccattcccatcaaaaaccccaatttcacatccctcaatctccgcccactttccaaaacccccaattccaagctctcaatcaaaacccacttcagaaaactcgtctgcaatgcgttgaaggactccggtaaagaaaagaaggtgtctttggacagtggcggcggcggagacggcggagaaggcggaggcggtgacggtggcgatgatgagcaaggggagaagaaaagtgggcccttgccggaatggttgaatataacaactgatgatgccaagacggtgtttgcggcaattgcagtatcgcttgcgtttcggtctttcatagctgagccgaggtttattccttccttgtcaatgtatcctactttggatgttggggatagaattgtagctgaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

155

Amino Acids

16.65

Weight (kDa)

6.83

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	112, 228, 231, 234, 243, 252, 258, 353
AcuI	CTGAAG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	187, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	3 cut(s)	142, 392, 458
AluI	AGCT	3 cut(s)	142, 392, 458
Alw26I	GTCTC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	299
ApaI	GGGCCC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	299, 300
AsuHPI	GGTGA	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	303
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	229, 232, 354
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	3 cut(s)	230, 233, 355
BmgT120I	GGNCC	2 cut(s)	299, 300
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse3DI	GCAATG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	98, 442
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	384
BseSI	GKGCMC	1 cut(s)	303
BshFI	GGCC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	195, 308
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	301
Bsp120I	GGGCCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	8 cut(s)	112, 228, 231, 234, 243, 252, 258, 353
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	398
Bst4CI	ACNGT	4 cut(s)	15, 224, 266, 346
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	98, 442
BstMAI	GTCTC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 249, 359
BstSFI	CTRYAG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	98, 442
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	299, 300
CviJI	RGCY	5 cut(s)	142, 301, 392, 397, 458
CviKI_1	RGCY	5 cut(s)	142, 301, 392, 397, 458
DdeI	CTNAG	1 cut(s)	393
EciI	GGCGGA	4 cut(s)	101, 249, 258, 267
Eco24I	GRGCYC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	231
FaiI	YATR	2 cut(s)	323, 389
Fnu4HI	GCNGC	3 cut(s)	229, 232, 354
FokI	GGATG	2 cut(s)	85, 449
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	229, 232, 354
GluI	GCNGC	3 cut(s)	229, 232, 354
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	2 cut(s)	195, 308
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	195, 308
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	5 cut(s)	42, 181, 202, 242, 420
HpyCH4III	ACNGT	4 cut(s)	15, 224, 266, 346
HpyCH4V	TGCA	2 cut(s)	177, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 249, 359
HpyF3I	CTNAG	1 cut(s)	393
LpnPI	CCDG	2 cut(s)	208, 321
LweI	GCATC	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	260
MboII	GAAGA	2 cut(s)	10, 301
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	4 cut(s)	91, 133, 357, 450
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	33, 47, 113, 248, 393
MspI	CCGG	2 cut(s)	195, 308
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	240, 249, 359
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	230, 233, 355
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	301
PspOMI	GGGCCC	1 cut(s)	299
PspPI	GGNCC	2 cut(s)	299, 300
SatI	GCNGC	3 cut(s)	229, 232, 354
Sau96I	GGNCC	2 cut(s)	299, 300
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	6 cut(s)	34, 144, 213, 394, 404, 460
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	91, 133, 357, 450
SsiI	CCGC	8 cut(s)	112, 228, 231, 234, 243, 252, 258, 353
TaaI	ACNGT	4 cut(s)	15, 224, 266, 346
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	91, 133, 357, 450
TauI	GCSGC	3 cut(s)	231, 234, 356
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	376
TspRI	CASTG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.