Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Reverse (-)

9235171 .. 9236648

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACGTCTCTTCCAATAATCCTCGCATCCTCTCCACTGCGAAACCTAACCAAACCTTGTTCAACTTCTCAAATCCCAAAACCCATTCAAAATTCTACAAAACAACCTCCAATACATCTCCTAACCAAAACCAATCTCTCTGTAACCATTTCCCAACTAATTATCACTTCCCCTGTTCTCGCATCTGAATCATTCGACTCAATTTCATCAGACCCATCTTCTGGAAAAATCGATTTAGAGTCAATTTTGGTCACAATTGATAATTTCTTCAACAAGTATCCATTTTTCGTAGCGGGATGTACTTTTACCTATCTTGTTGTTTATCCAGCTGTGATGTTTTACTTGAGGAAGTATAAACCAATATCCGCCATGAACGCGTTTCGTAAGCTTAAGAATGAATCTGATTCTCAGCTTTTGGATATTAGAGATGTCAAGACTTTGGCTTTGTTAGCATCACCGAATCTTAAGTTTTTGGGTAAGAGTTCTGTTCAGGTTCCGTTTAGTGAGAATGATGAAGAAGGGTTTTTGACGAAAGTTAAAGGAAGCTTCTCTGATGCTGAGAATACAGTTGTTTGTGTTCTTGATAATTTTGATGGTAACTCGTCGAAAGTAGCTGAATTGCTGATCAAGAATGGTTTCAAAGAGGCTTATTATATTAGAGGCGGCGCGAGAGGGAAGAATGGTTGGTTGGCTATTCAAGAAGAGCTTTTGCCTCCACCGGTGCATATGTACACTGCGAAAAACGTAAAATCTTCAAACAACAATGAAGCGTCTGTTGTTGGAACTGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.01

Weight (kDa)

8.62

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccII	CGCG	2 cut(s)	377, 668
AciI	CCGC	3 cut(s)	293, 366, 663
AcsI	RAATTY	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	301, 731
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	2 cut(s)	389, 464
AflIII	ACRYGT	1 cut(s)	375
AgeI	ACCGGT	1 cut(s)	718
AgsI	TTSAA	6 cut(s)	63, 89, 271, 640, 698, 756
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	6 cut(s)	329, 388, 412, 546, 614, 706
AluI	AGCT	6 cut(s)	329, 388, 412, 546, 614, 706
Alw26I	GTCTC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AsiGI	ACCGGT	1 cut(s)	718
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	447
BccI	CCATC	2 cut(s)	223, 587
BciVI	GTATCC	1 cut(s)	288
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	793
BfrI	CTTAAG	2 cut(s)	389, 464
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	664
BlsI	GCNGC	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	495
BmsI	GCATC	4 cut(s)	35, 191, 461, 544
BpuEI	CTTGAG	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	718
BseCI	ATCGAT	1 cut(s)	231
BseGI	GGATG	2 cut(s)	26, 302
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	3 cut(s)	422, 549, 777
Bsh1236I	CGCG	2 cut(s)	377, 668
BshTI	ACCGGT	1 cut(s)	718
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	1 cut(s)	624
BspACI	CCGC	3 cut(s)	293, 366, 663
BspCNI	CTCAG	3 cut(s)	421, 550, 778
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	377, 668
BspLI	GGNNCC	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	696
BspTI	CTTAAG	2 cut(s)	389, 464
BsrFI	RCCGGY	1 cut(s)	718
BsrGI	TGTACA	1 cut(s)	729
BssAI	RCCGGY	1 cut(s)	718
BssMI	GATC	1 cut(s)	624
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	2 cut(s)	15, 696
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	2 cut(s)	389, 464
BstAUI	TGTACA	1 cut(s)	729
BstDEI	CTNAG	3 cut(s)	408, 558, 786
BstF5I	GGATG	2 cut(s)	26, 302
BstFNI	CGCG	2 cut(s)	377, 668
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	1 cut(s)	627
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	624
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 449
BstUI	CGCG	2 cut(s)	377, 668
Bsu15I	ATCGAT	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	26, 302
BtsI	GCAGTG	2 cut(s)	35, 732
BtsIMutI	CAGTG	2 cut(s)	35, 732
CfoI	GCGC	1 cut(s)	668
Cfr10I	RCCGGY	1 cut(s)	718
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	300, 730
CspAI	ACCGGT	1 cut(s)	718
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	9 cut(s)	329, 388, 412, 443, 546, 614, 647, 692, 706
CviKI_1	RGCY	9 cut(s)	329, 388, 412, 443, 546, 614, 647, 692, 706
CviQI	GTAC	2 cut(s)	300, 730
DdeI	CTNAG	3 cut(s)	408, 558, 786
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	15, 696
EarI	CTCTTC	2 cut(s)	15, 696
EciI	GGCGGA	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	373
FaiI	YATR	5 cut(s)	354, 371, 654, 726, 728
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FatI	CATG	1 cut(s)	369
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	726
FbaI	TGATCA	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	664
FokI	GGATG	2 cut(s)	13, 309
Fsp4HI	GCNGC	1 cut(s)	664
FspBI	CTAG	1 cut(s)	793
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	1 cut(s)	664
HapII	CCGG	1 cut(s)	719
HgaI	GACGC	1 cut(s)	759
HhaI	GCGC	1 cut(s)	668
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HindIII	AAGCTT	2 cut(s)	386, 544
HinfI	GANTC	6 cut(s)	188, 197, 239, 398, 404, 460
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	4 cut(s)	187, 211, 403, 553
Hpy188III	TCNNGA	5 cut(s)	222, 433, 581, 628, 698
Hpy8I	GTNNAC	1 cut(s)	732
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	2 cut(s)	5, 744
HpyCH4V	TGCA	1 cut(s)	724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 449
HpyF3I	CTNAG	3 cut(s)	408, 558, 786
HpySE526I	ACGT	2 cut(s)	5, 744
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	666
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	624
LguI	GCTCTTC	1 cut(s)	696
LpnPI	CCDG	5 cut(s)	186, 207, 339, 476, 732
LweI	GCATC	4 cut(s)	35, 191, 461, 544
MaeI	CTAG	1 cut(s)	793
MaeII	ACGT	2 cut(s)	5, 744
MaeIII	GTNAC	3 cut(s)	142, 250, 596
MalI	GATC	1 cut(s)	626
MboI	GATC	1 cut(s)	624
MboII	GAAGA	6 cut(s)	210, 259, 527, 688, 713, 744
MfeI	CAATTG	1 cut(s)	255
MluCI	AATT	8 cut(s)	91, 159, 201, 243, 255, 262, 586, 617
MluI	ACGCGT	1 cut(s)	375
MlyI	GAGTC	2 cut(s)	191, 248
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	8 cut(s)	32, 40, 117, 339, 637, 653, 665, 723
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	3 cut(s)	390, 465, 537
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	2 cut(s)	389, 464
MspI	CCGG	1 cut(s)	719
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	377, 668
MwoI	GCNNNNNNNGC	2 cut(s)	374, 449
NdeI	CATATG	1 cut(s)	726
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	4 cut(s)	188, 398, 404, 460
PflMI	CCANNNNNTGG	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	718
PkrI	GCNGC	1 cut(s)	665
PleI	GAGTC	2 cut(s)	191, 247
PpsI	GAGTC	2 cut(s)	191, 247
PspN4I	GGNNCC	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	301, 731
RsaNI	GTAC	2 cut(s)	300, 730
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	3 cut(s)	390, 465, 537
SatI	GCNGC	1 cut(s)	664
Sau3AI	GATC	1 cut(s)	624
SchI	GAGTC	2 cut(s)	191, 248
SfaNI	GCATC	4 cut(s)	35, 191, 461, 544
SgrAI	CRCCGGYG	1 cut(s)	718
SmlI	CTYRAG	3 cut(s)	343, 389, 464
SmoI	CTYRAG	3 cut(s)	343, 389, 464
Sse9I	AATT	8 cut(s)	91, 159, 201, 243, 255, 262, 586, 617
SsiI	CCGC	3 cut(s)	293, 366, 663
SspMI	CTAG	1 cut(s)	793
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	2 cut(s)	8, 747
TaqI	TCGA	3 cut(s)	195, 231, 605
TasI	AATT	8 cut(s)	91, 159, 201, 243, 255, 262, 586, 617
TatI	WGTACW	2 cut(s)	299, 729
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	4 cut(s)	188, 398, 404, 460
Tru1I	TTAA	3 cut(s)	390, 465, 537
Tru9I	TTAA	3 cut(s)	390, 465, 537
TscAI	CASTG	2 cut(s)	42, 739
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	5 cut(s)	195, 386, 411, 528, 780
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	42, 739
Van91I	CCANNNNNTGG	1 cut(s)	221
Vha464I	CTTAAG	2 cut(s)	389, 464
XapI	RAATTY	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	1 cut(s)	793
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.