Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

18352606 .. 18354376

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTTTTGGAGAGGTTTGGGAACCCAGCAAAGACTGTCGTTTGCGTTCTGGGCAATTTTGATGGAATTTCCATCAAAGTGGCTGAGTTACTGTTCAAGAATGGTTTCAAAGAGGCTTATGCAATCAAGGTTGGGGTTGGAGGTACAAAGGGGTGGCTGGAGTCACAAGAAACTCTTTTGCCACCTTCTATGCATATCTACCCCAAGAAGAAGGTTAAAACTTCACAAGAAACTGTGACAAACGGAGGAGTTGTTCGGGGAAAGGTAGAGAGCAATGGTGCTGCCACTTCTACAAATTTGTCCACAGGAGAAAGTCAAACAACGGACAATGGACGCACAACCAAGGCTACAGACTCTGCGTCACTTGTGAAATATGGCTCTAGATCGATCCTTTCCCTACCCAACTTGCCAAGATTTGAAACCGCCGTCTTCCCCAACTCCATCGAAGCCCTGAAATCGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.55

Weight (kDa)

9.52

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	66, 295
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	97, 109, 419
AhdI	GACNNNNNGTC	1 cut(s)	358
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AlwI	GGATC	1 cut(s)	382
AlwNI	CAGNNNCTG	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	66, 295
Asp700I	GAANNNNTTC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	56, 80, 449
BceAI	ACGGC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	23
BmsI	GCATC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	179
Bsa29I	ATCGAT	2 cut(s)	386, 458
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse3DI	GCAATG	1 cut(s)	280
BseCI	ATCGAT	2 cut(s)	386, 458
BseDI	CCNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	25
BshVI	ATCGAT	2 cut(s)	386, 458
Bsp143I	GATC	2 cut(s)	383, 387
BspACI	CCGC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	76
BspDI	ATCGAT	2 cut(s)	386, 458
BspLI	GGNNCC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	383, 387
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	3 cut(s)	37, 93, 235
BstDEI	CTNAG	1 cut(s)	84
BstKTI	GATC	2 cut(s)	386, 390
BstMBI	GATC	2 cut(s)	383, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	79
Bsu15I	ATCGAT	2 cut(s)	386, 458
BsuTUI	ATCGAT	2 cut(s)	386, 458
CaiI	CAGNNNCTG	1 cut(s)	356
ClaI	ATCGAT	2 cut(s)	386, 458
CseI	GACGC	2 cut(s)	342, 348
Csp6I	GTAC	1 cut(s)	144
CviJI	RGCY	6 cut(s)	83, 116, 157, 347, 378, 449
CviKI_1	RGCY	6 cut(s)	83, 116, 157, 347, 378, 449
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	385, 389
DpnII	GATC	2 cut(s)	383, 387
DriI	GACNNNNNGTC	1 cut(s)	358
Eam1105I	GACNNNNNGTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	342
FaiI	YATR	4 cut(s)	120, 191, 195, 375
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	179
HgaI	GACGC	2 cut(s)	342, 348
HinfI	GANTC	2 cut(s)	161, 353
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188III	TCNNGA	2 cut(s)	97, 381
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	2 cut(s)	195, 205
HpyCH4III	ACNGT	3 cut(s)	37, 93, 235
HpyCH4V	TGCA	2 cut(s)	122, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	383, 387
LpnPI	CCDG	5 cut(s)	35, 39, 143, 291, 464
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	4 cut(s)	87, 162, 235, 360
MalI	GATC	2 cut(s)	385, 389
MboI	GATC	2 cut(s)	383, 387
MboII	GAAGA	2 cut(s)	220, 421
MluCI	AATT	3 cut(s)	55, 66, 295
MlyI	GAGTC	2 cut(s)	170, 347
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	6, 106, 134, 239
Mph1103I	ATGCAT	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	383, 387
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	3 cut(s)	162, 235, 360
NsiI	ATGCAT	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	2 cut(s)	169, 347
PpsI	GAGTC	2 cut(s)	169, 347
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	383, 387
SchI	GAGTC	2 cut(s)	170, 347
SetI	ASST	6 cut(s)	17, 132, 145, 187, 216, 267
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	55, 66, 295
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	37, 93, 235
TaqI	TCGA	3 cut(s)	386, 444, 458
TasI	AATT	3 cut(s)	55, 66, 295
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	3 cut(s)	162, 235, 360
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	3 cut(s)	162, 235, 360
TspGWI	ACGGA	2 cut(s)	258, 338
XapI	RAATTY	2 cut(s)	66, 295
XbaI	TCTAGA	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	381
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.