Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

23576225 .. 23578930

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1147900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGTCCCTCTCCATGATTCTCTCCTTTTCTCCACCACCCCAAAACCACCTCAAAGCCCAGAAACCATCCACCTCTCCACCAACCTCTCTTCCCCAAACCACCACCATTCCCGCCATTTCCACTTCCCTGCCACCCAATTCTTCCCACGCCCAATTTCCCTCCACCAAAAACACTCCTCACACCCCAATTTTCCTTCTCAAACCCACTCATTTTCCCCACAGATTACCAAAAACCCAACTCACATTCCTCCTCACCGAGCTCATTGCAACCACCCCATTTGCCCTTCCTTCTTTCGCTTCCGAATCTGCAGCCTCCGCACCGGAGCAAGTTTCCGACAAAATAAACCTGGAATCAGTCTTGGTCTCGATCGATGACTTTTTCAATCGGAACCCGTTTTTCGTTGCTGGGTGCACGTTCGTATGGCTGGTTGTGATTCCTCTGGTTCAGGCGTATTTGAGAAAGTACAAGTTTGTCCTCGTCATTGACGCGTTTCGGAAGCTCCGGGACGACCCGAATGCTCAGCTGTTGGATATTCGAGACCAGAAGAGCTTGGGGTACCTGAAGTCTCCGAATTTGAAGATTTTGAACAAGGGTACTGTGCAGGTTCCGTTTTCGGAGGATGACGAAGCTGGGTTTGTGAAAAGGGTTTTGGAGAGGTTTGCGAACCCAGCAGAGACTGTGCTTTGTGTTCTGGGCAATTTTGATGGAATTTCCATCAAAGTGGCTGAGTTACTGTTCAAGAATGGTTTCAAAGAGGCTTATGCAATCAAGGGTGGGGTTGGAGGTACAAAAGGGTGGCTGGAATCACAAGAAACTCTTTTGCCACCTTCTATGCATATATACCCCAAGAAGAAGGTTAAAACTTCACAAGAAACTGTGACAAACGGAGTTGTTCGGGGAAAGGAAGACAGCAATGGTGCTGTCACTTCCAGAAATTTGTCCACAGGAGAAAGTCAAACGACAGACAATGGACGCACAACCAAGTCTACCGACTCCGCATCACAAATGAAAAATGGCTCTAGATCATCCTCTCCCTACCCAAGCTATCCAGATTTGAAACCGCCATCTTCCCCAACTCCATCGAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

39.79

Weight (kDa)

9.36

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AccI	GTMKAC	1 cut(s)	989
AccII	CGCG	1 cut(s)	491
AciI	CCGC	4 cut(s)	114, 318, 999, 1064
AcsI	RAATTY	3 cut(s)	574, 711, 937
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	4 cut(s)	467, 560, 598, 790
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	6 cut(s)	385, 580, 589, 742, 754, 1060
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	6 cut(s)	262, 502, 526, 552, 632, 1047
AluI	AGCT	6 cut(s)	262, 502, 526, 552, 632, 1047
Alw21I	GWGCWC	2 cut(s)	264, 416
Alw26I	GTCTC	4 cut(s)	370, 534, 573, 671
Alw44I	GTGCAC	1 cut(s)	412
AlwNI	CAGNNNCTG	1 cut(s)	680
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	3 cut(s)	574, 711, 937
Asp700I	GAANNNNTTC	1 cut(s)	749
Asp718I	GGTACC	1 cut(s)	558
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	915
Bbv12I	GWGCWC	2 cut(s)	264, 416
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	5 cut(s)	76, 701, 725, 1075, 1090
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 500, 534
BciT130I	CCWGG	1 cut(s)	350
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	4 cut(s)	370, 534, 573, 671
BfaI	CTAG	1 cut(s)	1023
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	350, 506
BmiI	GGNNCC	3 cut(s)	392, 560, 609
BmrFI	CCNGG	2 cut(s)	350, 506
BmsI	GCATC	1 cut(s)	1010
BpiI	GAAGAC	1 cut(s)	915
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	372
BsaI	GGTCTC	2 cut(s)	370, 534
BsaWI	WCCGGW	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	264, 922
BseBI	CCWGG	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	372
BseGI	GGATG	3 cut(s)	68, 628, 1028
BseMI	GCAATG	2 cut(s)	264, 922
BseMII	CTCAG	2 cut(s)	536, 720
BseRI	GAGGAG	2 cut(s)	168, 242
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	3 cut(s)	407, 632, 670
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	2 cut(s)	264, 416
BsiSI	CCGG	2 cut(s)	323, 505
BslFI	GGGAC	1 cut(s)	521
BsmAI	GTCTC	4 cut(s)	370, 534, 573, 671
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	523
Bso31I	GGTCTC	2 cut(s)	370, 534
Bsp1286I	GDGCHC	2 cut(s)	264, 416
Bsp143I	GATC	2 cut(s)	369, 1025
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	4 cut(s)	114, 318, 999, 1064
BspCNI	CTCAG	2 cut(s)	535, 721
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	392, 560, 609
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	595
BspQI	GCTCTTC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	558
BspTNI	GGTCTC	2 cut(s)	370, 534
BsrDI	GCAATG	2 cut(s)	264, 922
BssMI	GATC	2 cut(s)	369, 1025
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	4 cut(s)	601, 682, 738, 880
Bst6I	CTCTTC	2 cut(s)	96, 542
BstDEI	CTNAG	2 cut(s)	522, 729
BstF5I	GGATG	3 cut(s)	68, 628, 1028
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	2 cut(s)	372, 1028
BstMAI	GTCTC	4 cut(s)	370, 534, 573, 671
BstMBI	GATC	2 cut(s)	369, 1025
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 671
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	348, 504
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	416
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	915
BstXI	CCANNNNNNTGG	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	372
BsuTUI	ATCGAT	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	68, 628, 1028
BveI	ACCTGC	1 cut(s)	595
CaiI	CAGNNNCTG	1 cut(s)	680
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	2 cut(s)	497, 984
Csp6I	GTAC	4 cut(s)	466, 559, 597, 789
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	1 cut(s)	16
CviQI	GTAC	4 cut(s)	466, 559, 597, 789
DdeI	CTNAG	2 cut(s)	522, 729
DpnI	GATC	2 cut(s)	371, 1027
DpnII	GATC	2 cut(s)	369, 1025
Eam1104I	CTCTTC	2 cut(s)	96, 542
EarI	CTCTTC	2 cut(s)	96, 542
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco31I	GGTCTC	2 cut(s)	370, 534
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	840
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	1 cut(s)	19
FaiI	YATR	7 cut(s)	17, 424, 765, 836, 840, 842, 844
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	1 cut(s)	15
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	989
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	3 cut(s)	55, 635, 1015
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	1023
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	3 cut(s)	411, 636, 674
HapII	CCGG	2 cut(s)	323, 505
HgaI	GACGC	2 cut(s)	497, 984
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	7 cut(s)	5, 19, 305, 353, 436, 806, 995
HpaII	CCGG	2 cut(s)	323, 505
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	414, 945, 990
Hpy188I	TCNGA	6 cut(s)	304, 337, 390, 498, 573, 619
Hpy188III	TCNNGA	6 cut(s)	367, 539, 742, 933, 1023, 1052
Hpy8I	GTNNAC	3 cut(s)	414, 945, 990
HpyAV	CCTTC	5 cut(s)	206, 296, 300, 840, 850
HpyCH4III	ACNGT	4 cut(s)	601, 682, 738, 880
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	6 cut(s)	269, 311, 414, 604, 767, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 671
HpyF3I	CTNAG	2 cut(s)	522, 729
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	1 cut(s)	19
KpnI	GGTACC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	369, 1025
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	2 cut(s)	325, 507
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	1010
MaeI	CTAG	1 cut(s)	1023
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	3 cut(s)	732, 880, 925
MalI	GATC	2 cut(s)	371, 1027
MboI	GATC	2 cut(s)	369, 1025
MboII	GAAGA	7 cut(s)	83, 135, 559, 592, 865, 920, 1062
MhlI	GDGCHC	2 cut(s)	264, 416
MluCI	AATT	7 cut(s)	139, 155, 189, 574, 700, 711, 937
MluI	ACGCGT	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	14, 989
MmeI	TCCRAC	3 cut(s)	360, 510, 763
Mph1103I	ATGCAT	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	2 cut(s)	323, 505
MspR9I	CCNGG	2 cut(s)	350, 506
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	317, 671
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	2 cut(s)	369, 1025
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	3 cut(s)	392, 560, 609
NmuCI	GTSAC	2 cut(s)	880, 925
NsiI	ATGCAT	1 cut(s)	840
PciSI	GCTCTTC	1 cut(s)	542
PctI	GAATGC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	5 cut(s)	19, 305, 353, 436, 806
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	313
Ple19I	CGATCG	1 cut(s)	372
PleI	GAGTC	2 cut(s)	13, 989
PpsI	GAGTC	2 cut(s)	13, 989
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	3 cut(s)	407, 632, 670
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	392, 560, 609
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	680
PvuI	CGATCG	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	4 cut(s)	467, 560, 598, 790
RsaNI	GTAC	4 cut(s)	466, 559, 597, 789
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	369, 1025
SchI	GAGTC	2 cut(s)	14, 989
ScrFI	CCNGG	2 cut(s)	350, 506
SduI	GDGCHC	2 cut(s)	264, 416
SfaNI	GCATC	1 cut(s)	1010
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	722
Sse9I	AATT	7 cut(s)	139, 155, 189, 574, 700, 711, 937
SsiI	CCGC	4 cut(s)	114, 318, 999, 1064
SspMI	CTAG	1 cut(s)	1023
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	348, 504
TaaI	ACNGT	4 cut(s)	601, 682, 738, 880
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	4 cut(s)	368, 372, 538, 1085
TasI	AATT	7 cut(s)	139, 155, 189, 574, 700, 711, 937
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	5 cut(s)	19, 305, 353, 436, 806
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TseFI	GTSAC	2 cut(s)	880, 925
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	2 cut(s)	880, 925
TspDTI	ATGAA	1 cut(s)	1025
TspGWI	ACGGA	2 cut(s)	600, 903
VneI	GTGCAC	1 cut(s)	412
XapI	RAATTY	3 cut(s)	574, 711, 937
XbaI	TCTAGA	1 cut(s)	1022
XmiI	GTMKAC	1 cut(s)	989
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	1 cut(s)	1023
Zsp2I	ATGCAT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.