Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Reverse (-)

47814314 .. 47814775

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCGATTAACATTATTCTAGTAGTGGCACCATTCCAAACCCACCCCAAAACCCAGAAACCACTCACTTCACTACCAATCTCTCTTCCCAAAACATCCATTCTCACCTCTCAATCATTCAACTCCCACCCCCTTCAATTTCCCTCCATCAAAAACCTCTTTCACAACCAACATAAAACCCATATCTCCTTTCTCCTCACTGAGCTCATCGCAACCACCGCCATTACTTTCCCTTCTTTTGCTTCCGAAGCCACAGCTTCTGAGCAAGTCTTAGACAAAATAAACTTGGAGTCAATCATGGTCTCAATTGATGAGTTTTTCAACAAGTACCCATATTTCGTTGCCGGTTGTACATTCATTTGGTTGGTTGGTGTACCTGTAGTTCAAGAGTACTTGAGAAAATATAAGTTCATCTCTGTTATTAATGCATTCCGGAAACTCAAAGAGGACCCCACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.32

Weight (kDa)

9.04

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	1 cut(s)	219
AfaI	GTAC	4 cut(s)	329, 352, 375, 392
AgsI	TTSAA	4 cut(s)	121, 137, 322, 386
AluBI	AGCT	2 cut(s)	205, 257
AluI	AGCT	2 cut(s)	205, 257
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	260
Aor13HI	TCCGGA	1 cut(s)	432
AseI	ATTAAT	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	378
BmcAI	AGTACT	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	30, 450
BpuEI	CTTGAG	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	432
BseGI	GGATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	192, 252
BseRI	GAGGAG	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	345, 433
BsmAI	GTCTC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	350
BspACI	CCGC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	193, 253
BspEI	TCCGGA	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	30, 450
BspT107I	GGYRCC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	350
BstDEI	CTNAG	4 cut(s)	201, 261, 271, 459
BstF5I	GGATG	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 248
BstSFI	CTRYAG	1 cut(s)	378
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	198, 453
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	328, 351, 374, 391
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	3 cut(s)	205, 251, 257
CviKI_1	RGCY	3 cut(s)	205, 251, 257
CviQI	GTAC	4 cut(s)	328, 351, 374, 391
DdeI	CTNAG	4 cut(s)	201, 261, 271, 459
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	1 cut(s)	301
FaiI	YATR	5 cut(s)	174, 183, 299, 334, 405
FatI	CATG	1 cut(s)	297
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	20
HapII	CCGG	2 cut(s)	345, 433
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	2 cut(s)	345, 433
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	2 cut(s)	247, 262
Hpy188III	TCNNGA	2 cut(s)	386, 433
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	143, 243
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 248
HpyF3I	CTNAG	4 cut(s)	201, 261, 271, 459
Hsp92II	CATG	1 cut(s)	301
Kpn2I	TCCGGA	1 cut(s)	432
LpnPI	CCDG	4 cut(s)	68, 358, 390, 446
MaeI	CTAG	1 cut(s)	20
MboII	GAAGA	1 cut(s)	77
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	137, 306
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	5 cut(s)	118, 154, 167, 206, 439
Mph1103I	ATGCAT	1 cut(s)	430
MroI	TCCGGA	1 cut(s)	432
MseI	TTAA	2 cut(s)	9, 423
MspI	CCGG	2 cut(s)	345, 433
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	218, 248
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	30, 450
NsiI	ATGCAT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	428
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	30, 450
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PsrI	GAACNNNNNNTAC	2 cut(s)	366, 398
PstNI	CAGNNNCTG	1 cut(s)	260
RsaI	GTAC	4 cut(s)	329, 352, 375, 392
RsaNI	GTAC	4 cut(s)	328, 351, 374, 391
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	9, 423
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	5 cut(s)	110, 159, 207, 259, 379
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	2 cut(s)	137, 306
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	207
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	137, 306
TatI	WGTACW	2 cut(s)	350, 390
Tru1I	TTAA	2 cut(s)	9, 423
Tru9I	TTAA	2 cut(s)	9, 423
TscAI	CASTG	2 cut(s)	205, 460
TspDTI	ATGAA	2 cut(s)	346, 400
TspRI	CASTG	2 cut(s)	205, 460
VpaK11BI	GGWCC	1 cut(s)	448
VspI	ATTAAT	1 cut(s)	423
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.