Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

28438426 .. 28441046

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1153600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACTTTTTCAATCGAAACGTTCGTCTGGCTGGTTGTGATTCCTCTGGTCCGGGCGTATTTGAGAAAGTACAAGTTTGTCCTTGTCATTGACGCGTTTCGGAAGCTCCGGGACCACCCGAACGCTCAGCTGCTGGATATTCGGGACGAGAAGAGCTTGGGGTATCTGAAGTCTCCGAATTTGAAGATTTTGAATAAGTGCACGGTGCAGGTTCCGTTTTCGGAGGAAGATGAAGCTGGGTTTGTGAAAAGGGTTTTGGAGAAGTTAGGGAACCCAGCAGAGACTGTCGTTTGCGTTCTGGGCAATTTTGATGGAATTTCCATCAAAGTGGCTGAGTTATTGTTCAAGAATGGCTTCAAAGAGGCTTATGCAATCAAGGGTGGGGTTGGAGGTACAAAAGGGTGGCTGGAGTCACAAGAAACTCTTTTGCCACCTTCTATGCATATCTACCCCAAGAAGAAGGTTAAAACTTCACAAGAAACTGTGACAAACGGAGGAGTTGTTCGGGGAAAGGTCTGCCACTTCTACAAATTTGTCCGCGGGAGAAAGTCAAACAACGGACAATGGACGCACAACCAAGGCTACAGACTCTGTGTCAATTGTGAAAAATGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.31

Weight (kDa)

9.58

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccII	CGCG	2 cut(s)	95, 540
AciI	CCGC	2 cut(s)	538, 540
AclI	AACGTT	1 cut(s)	20
AcsI	RAATTY	3 cut(s)	178, 315, 530
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	2 cut(s)	71, 394
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	5 cut(s)	12, 184, 193, 346, 358
AhdI	GACNNNNNGTC	1 cut(s)	593
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	4 cut(s)	106, 130, 156, 236
AluI	AGCT	4 cut(s)	106, 130, 156, 236
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	2 cut(s)	177, 275
Alw44I	GTGCAC	1 cut(s)	199
AlwNI	CAGNNNCTG	3 cut(s)	133, 284, 591
ApaLI	GTGCAC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	3 cut(s)	178, 315, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	49, 112
AsuC2I	CCSGG	2 cut(s)	53, 110
AvaII	GGWCC	2 cut(s)	49, 112
BaeGI	GKGCMC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	305, 329
BcnI	CCSGG	2 cut(s)	53, 110
BcoDI	GTCTC	2 cut(s)	177, 275
BfaI	CTAG	1 cut(s)	616
BfmI	CTRYAG	1 cut(s)	583
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	131
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	53, 110
Bme18I	GGWCC	2 cut(s)	49, 112
BmeRI	GACNNNNNGTC	1 cut(s)	593
BmgT120I	GGNCC	2 cut(s)	49, 112
BmiI	GGNNCC	3 cut(s)	113, 213, 272
BmrFI	CCNGG	2 cut(s)	53, 110
BpmI	CTGGAG	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	53, 110
BsaJI	CCNNGG	2 cut(s)	538, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
BseDI	CCNNGG	2 cut(s)	538, 577
BseMII	CTCAG	2 cut(s)	140, 324
BseRI	GAGGAG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	2 cut(s)	236, 274
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	2 cut(s)	95, 540
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	52, 109
BslFI	GGGAC	2 cut(s)	125, 158
BsmAI	GTCTC	2 cut(s)	177, 275
BsmFI	GGGAC	2 cut(s)	125, 158
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	538, 540
BspCNI	CTCAG	2 cut(s)	139, 325
BspFNI	CGCG	2 cut(s)	95, 540
BspLI	GGNNCC	3 cut(s)	113, 213, 272
BspMI	ACCTGC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	538, 577
BssT1I	CCWWGG	1 cut(s)	577
Bst4CI	ACNGT	3 cut(s)	205, 286, 484
Bst6I	CTCTTC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	126, 333
BstDSI	CCRYGG	1 cut(s)	538
BstFNI	CGCG	2 cut(s)	95, 540
BstMAI	GTCTC	2 cut(s)	177, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	51, 108
BstSFI	CTRYAG	1 cut(s)	583
BstSLI	GKGCMC	1 cut(s)	203
BstUI	CGCG	2 cut(s)	95, 540
BstV1I	GCAGC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	538
BveI	ACCTGC	1 cut(s)	199
CaiI	CAGNNNCTG	3 cut(s)	133, 284, 591
Cfr13I	GGNCC	2 cut(s)	49, 112
Cfr42I	CCGCGG	1 cut(s)	541
CseI	GACGC	2 cut(s)	101, 577
Csp6I	GTAC	2 cut(s)	70, 393
CviQI	GTAC	2 cut(s)	70, 393
DdeI	CTNAG	2 cut(s)	126, 333
DriI	GACNNNNNGTC	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	49, 112
Eco57I	CTGAAG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	577
EcoT22I	ATGCAT	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	577
FaiI	YATR	3 cut(s)	369, 440, 444
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 408, 440
FaqI	GGGAC	2 cut(s)	125, 158
FauI	CCCGC	1 cut(s)	533
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	616
GluI	GCNGC	1 cut(s)	131
GsaI	CCCAGC	2 cut(s)	240, 278
GsuI	CTGGAG	1 cut(s)	428
HapII	CCGG	2 cut(s)	52, 109
HgaI	GACGC	2 cut(s)	101, 577
HinfI	GANTC	3 cut(s)	40, 410, 588
HpaII	CCGG	2 cut(s)	52, 109
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	4 cut(s)	102, 168, 177, 223
Hpy188III	TCNNGA	2 cut(s)	143, 346
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	444, 454
HpyCH4III	ACNGT	3 cut(s)	205, 286, 484
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	4 cut(s)	201, 208, 371, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	2 cut(s)	126, 333
HpySE526I	ACGT	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	541
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	616
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	411, 484
MboII	GAAGA	4 cut(s)	163, 196, 239, 469
MfeI	CAATTG	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	178, 304, 315, 530, 598
MluI	ACGCGT	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	419, 582
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	5 cut(s)	54, 217, 355, 383, 488
Mph1103I	ATGCAT	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	130, 540
MspI	CCGG	2 cut(s)	52, 109
MspR9I	CCNGG	2 cut(s)	53, 110
MunI	CAATTG	1 cut(s)	598
MvnI	CGCG	2 cut(s)	95, 540
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	53, 110
NlaIV	GGNNCC	3 cut(s)	113, 213, 272
NmuCI	GTSAC	2 cut(s)	411, 484
NsiI	ATGCAT	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	2 cut(s)	418, 582
PpsI	GAGTC	2 cut(s)	418, 582
Psp1406I	AACGTT	1 cut(s)	20
PspFI	CCCAGC	2 cut(s)	236, 274
PspN4I	GGNNCC	3 cut(s)	113, 213, 272
PspPI	GGNCC	2 cut(s)	49, 112
PstNI	CAGNNNCTG	3 cut(s)	133, 284, 591
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	71, 394
RsaNI	GTAC	2 cut(s)	70, 393
RseI	CAYNNNNRTG	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	49, 112
SchI	GAGTC	2 cut(s)	419, 582
ScrFI	CCNGG	2 cut(s)	53, 110
SduI	GDGCHC	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	583
Sfr303I	CCGCGG	1 cut(s)	541
SgrBI	CCGCGG	1 cut(s)	541
SinI	GGWCC	2 cut(s)	49, 112
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	5 cut(s)	178, 304, 315, 530, 598
SsiI	CCGC	2 cut(s)	538, 540
SspMI	CTAG	1 cut(s)	616
StyD4I	CCNGG	2 cut(s)	51, 108
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	3 cut(s)	205, 286, 484
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	15
TasI	AATT	5 cut(s)	178, 304, 315, 530, 598
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseFI	GTSAC	2 cut(s)	411, 484
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	2 cut(s)	411, 484
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	3 cut(s)	204, 507, 573
VneI	GTGCAC	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	49, 112
XapI	RAATTY	3 cut(s)	178, 315, 530
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	616
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.