Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Reverse (-)

43768834 .. 43769786

Gene Structure 953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGACCATACACGAACATCCTTTCTCTTCTTGGCCTTATCCTCTCTCTGTTTTCTCCCTCTTTCACTTTCCTGTACTCCTTCCCATGGAGTCTCTTTCCATGGTCCTCTCCTGTTCTTCTCTACCATTCCAAAGTTCCAAACCCACCCCAAAACCCAGAAACCACTGTCTTCACTACCAATCTCTCTTCCCAAAACCTCCATTCTCACCGCTCAATCATTCAACTCCCACCCTCTTCAATTTCCCTCCATCAAAAACCTCTTTCACAACCAACCCAAAACCCATCTCTCCTTTCTCCTCACTGAGCTTATCGCAACCACCACTATTACTTTCCCTTCTTTTGCTTTTGAAGCCGCAGCTTCCGAGCAAGTTTCAGACAAAATAAACTTGGAGTCAATCCTGGTCTCAATTGATGAGTTTTTCAACAAGTACCCATATTTCGTTGCTGGTTGTACGTTCATTTGGTTGCTATTAGATATTAGGGACGAGAAGAGTTTGAAGTATTTGAGGTCTCCCAACTTGAAGATTGTGAATAAGCATACTGTGCTGGTTCAGTTTTCAGAGGATGATGAAGATGGGTTTGTAAAGAAGGTTTTGCAGAAGTTCAGAGACTCAGGAAACACGGTCGTCTGTGTTTTGGGAAATATCAGGAAGAAGATGAAAGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

25.14

Weight (kDa)

9.16

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	2 cut(s)	210, 354
AfaI	GTAC	3 cut(s)	76, 431, 454
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	6 cut(s)	223, 239, 350, 424, 499, 523
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	3 cut(s)	307, 359, 665
AluI	AGCT	3 cut(s)	307, 359, 665
Alw26I	GTCTC	4 cut(s)	97, 409, 516, 603
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	4, 104
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	4, 104
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	3 cut(s)	257, 291, 569
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	4 cut(s)	97, 409, 516, 603
BisI	GCNGC	2 cut(s)	354, 357
BlsI	GCNGC	2 cut(s)	355, 358
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	2 cut(s)	4, 104
BmgT120I	GGNCC	2 cut(s)	4, 104
BmrFI	CCNGG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	162
BsaI	GGTCTC	2 cut(s)	409, 516
BsaJI	CCNNGG	2 cut(s)	85, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	85, 100
BseGI	GGATG	2 cut(s)	17, 571
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	294, 627
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	368
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	627
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	4 cut(s)	97, 409, 516, 603
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	2 cut(s)	409, 516
Bsp19I	CCATGG	2 cut(s)	85, 100
BspACI	CCGC	2 cut(s)	210, 354
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	295, 626
BspTNI	GGTCTC	2 cut(s)	409, 516
BsrBI	CCGCTC	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	85, 100
BssT1I	CCWWGG	2 cut(s)	85, 100
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	3 cut(s)	168, 544, 625
Bst6I	CTCTTC	4 cut(s)	32, 192, 240, 485
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	303, 613
BstDSI	CCRYGG	2 cut(s)	85, 100
BstF5I	GGATG	2 cut(s)	17, 571
BstMAI	GTCTC	4 cut(s)	97, 409, 516, 603
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 544
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	2 cut(s)	85, 100
BtsCI	GGATG	2 cut(s)	17, 571
BtsIMutI	CAGTG	2 cut(s)	164, 300
Cfr13I	GGNCC	2 cut(s)	4, 104
Csp6I	GTAC	3 cut(s)	75, 430, 453
CviAII	CATG	2 cut(s)	86, 101
CviJI	RGCY	5 cut(s)	35, 307, 353, 359, 665
CviKI_1	RGCY	5 cut(s)	35, 307, 353, 359, 665
CviQI	GTAC	3 cut(s)	75, 430, 453
DdeI	CTNAG	2 cut(s)	303, 613
Eam1104I	CTCTTC	4 cut(s)	32, 192, 240, 485
EarI	CTCTTC	4 cut(s)	32, 192, 240, 485
Eco130I	CCWWGG	2 cut(s)	85, 100
Eco31I	GGTCTC	2 cut(s)	409, 516
Eco47I	GGWCC	2 cut(s)	4, 104
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	85, 100
ErhI	CCWWGG	2 cut(s)	85, 100
FaeI	CATG	2 cut(s)	89, 104
FaiI	YATR	6 cut(s)	9, 87, 102, 436, 540, 670
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	2 cut(s)	85, 100
Fnu4HI	GCNGC	2 cut(s)	354, 357
FokI	GGATG	2 cut(s)	4, 578
Fsp4HI	GCNGC	2 cut(s)	354, 357
GluI	GCNGC	2 cut(s)	354, 357
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	89, 104
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	3 cut(s)	90, 392, 611
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	364, 376, 562, 608
Hpy188III	TCNNGA	2 cut(s)	615, 649
HpyAV	CCTTC	3 cut(s)	90, 345, 583
HpyCH4III	ACNGT	3 cut(s)	168, 544, 625
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	1 cut(s)	598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 544
HpyF3I	CTNAG	2 cut(s)	303, 613
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	2 cut(s)	89, 104
LpnPI	CCDG	9 cut(s)	85, 125, 170, 386, 413, 432, 533, 600, 634
Lsp1109I	GCAGC	1 cut(s)	368
MaeII	ACGT	1 cut(s)	455
MbiI	CCGCTC	1 cut(s)	212
MfeI	CAATTG	1 cut(s)	408
MluCI	AATT	2 cut(s)	239, 408
MlyI	GAGTC	3 cut(s)	99, 401, 605
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	350, 544
NcoI	CCATGG	2 cut(s)	85, 100
NlaIII	CATG	2 cut(s)	89, 104
PkrI	GCNGC	2 cut(s)	355, 358
PleI	GAGTC	3 cut(s)	98, 400, 605
PpsI	GAGTC	3 cut(s)	98, 400, 605
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	4, 104
RsaI	GTAC	3 cut(s)	76, 431, 454
RsaNI	GTAC	3 cut(s)	75, 430, 453
SatI	GCNGC	2 cut(s)	354, 357
Sau96I	GGNCC	2 cut(s)	4, 104
SchI	GAGTC	3 cut(s)	99, 401, 605
ScrFI	CCNGG	1 cut(s)	401
SetI	ASST	8 cut(s)	200, 261, 309, 361, 458, 512, 594, 667
SinI	GGWCC	2 cut(s)	4, 104
Sse9I	AATT	2 cut(s)	239, 408
SsiI	CCGC	2 cut(s)	210, 354
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	85, 100
TaaI	ACNGT	3 cut(s)	168, 544, 625
TaiI	ACGT	1 cut(s)	458
TasI	AATT	2 cut(s)	239, 408
TatI	WGTACW	1 cut(s)	74
TauI	GCSGC	1 cut(s)	356
TscAI	CASTG	2 cut(s)	171, 307
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	448, 585, 657
TspRI	CASTG	2 cut(s)	171, 307
VpaK11BI	GGWCC	2 cut(s)	4, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.