Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

15044058 .. 15046082

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGACTCTCTTTCCATGGTCCTCTCCTGTTCTTCTCCACCTCTCCAAACCCACCTCAAAACCCACAAACCAATCTCTCTTCCCAAAACCTCCATCCTCACTTCCCAATCACTCACCTCTCACCACCCTCATTTCCCCGCCCTCAAAAACCTCCTCCAACCAAGAACCCACCTCTCCTTCCTCCTCACCAACCTCATTGCCACCACCACCATTACCTCCCCTTCTTTCGCTTCCGAGCAAGTCGCGGACAAAATCAACTTGGAGTCGATCCTTGGCTCAGTTGATGAGTTCTTCAACAAGTACCCGTTTTTCGTTGCGGGTTGTACGTTTGTTTGGTTGGTTGGTGTACCTGTAGTTGAATATTACTCTAGAAAATATAAGTTCATTTCTGTTTTTAATGCGTTCCGGAAACTCAAAGAGGACCCGGCTGTTCAGTTGTTGGATATTAGAGACGAGAAGAGTTTGAAGTACTTGAAGTCTCCCAACTTGAGGATTGTGAATAAGGATGCTGTTCAGGTTCGGTTTGATGAGAATGATGAAGATGGGTTTGTGAAGAAGGTTTTGCAGAAGTTTGGAGACCCGGGGAACACTGTCGTCTGTGTTTTGGGGAATTTTGATGGTATTTCCATCAAAGTGGCCGAGTTACTAGTCAAGAACGGTTTCAAAGAGACTTATGCGATCAAGGGAGGGGTTGGAGGCACCAAAGGGTGGTTGGAATCACAGGAAACTCTTTTGCCACCTTCTATGCATATGTACCCTAAGAAGAAGGTTAAAAATTCAAAAGAATCTGGGACAAATGGTGGAGTTGGTCAGCGAAAAGAAGATGCCAATAATGCTGCATCTTCTCCGGGAAATGTTGCCGTAGCAGAAAAACAAAAGATCGACAATGGACATATAACCAAGTCCACGGAGGCTGTGTCACTAGTGAAAGATGGCTCTAGATCCTCTTCTCCCTACCCAAATTACCCTGATTTGAAACCACCGTCTTCCCCAACTCCATCGAAGCCACGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

37.14

Weight (kDa)

9.35

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	698
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccII	CGCG	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	405
AciI	CCGC	3 cut(s)	138, 245, 317
AclWI	GGATC	2 cut(s)	262, 936
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	2 cut(s)	610, 775
AfaI	GTAC	5 cut(s)	302, 325, 348, 470, 755
AfiI	CCNNNNNNNGG	2 cut(s)	489, 708
AgsI	TTSAA	7 cut(s)	295, 359, 466, 475, 664, 780, 976
AhlI	ACTAGT	2 cut(s)	646, 922
Alw26I	GTCTC	4 cut(s)	444, 483, 570, 662
AlwI	GGATC	2 cut(s)	262, 936
Ama87I	CYCGRG	1 cut(s)	580
Aor13HI	TCCGGA	1 cut(s)	405
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	836
ApoI	RAATTY	2 cut(s)	610, 775
Asp700I	GAANNNNTTC	1 cut(s)	659
AspS9I	GGNCC	2 cut(s)	19, 421
AsuC2I	CCSGG	4 cut(s)	425, 581, 582, 849
AsuHPI	GGTGA	3 cut(s)	106, 113, 178
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	2 cut(s)	19, 421
BanI	GGYRCC	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	978
BbvI	GCAGC	1 cut(s)	823
BccI	CCATC	6 cut(s)	101, 536, 611, 635, 926, 1006
BceAI	ACGGC	1 cut(s)	845
BcnI	CCSGG	4 cut(s)	425, 581, 582, 849
BcoDI	GTCTC	4 cut(s)	444, 483, 570, 662
BcuI	ACTAGT	2 cut(s)	646, 922
BfaI	CTAG	4 cut(s)	369, 647, 923, 939
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	837
BlsI	GCNGC	1 cut(s)	838
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	4 cut(s)	425, 581, 582, 849
Bme18I	GGWCC	2 cut(s)	19, 421
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	2 cut(s)	19, 421
BmiI	GGNNCC	2 cut(s)	423, 700
BmrFI	CCNGG	4 cut(s)	425, 581, 582, 849
BmsI	GCATC	3 cut(s)	496, 814, 848
BpiI	GAAGAC	1 cut(s)	978
BpuEI	CTTGAG	1 cut(s)	508
BpuMI	CCSGG	4 cut(s)	425, 581, 582, 849
BsaI	GGTCTC	1 cut(s)	570
BsaJI	CCNNGG	5 cut(s)	15, 271, 580, 581, 906
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 708
Bse3DI	GCAATG	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	405
BseDI	CCNNGG	5 cut(s)	15, 271, 580, 581, 906
BseGI	GGATG	2 cut(s)	93, 511
BseLI	CCNNNNNNNGG	2 cut(s)	489, 708
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	143, 173
BseXI	GCAGC	1 cut(s)	823
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	638
BshNI	GGYRCC	1 cut(s)	698
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	4 cut(s)	406, 425, 581, 848
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	2 cut(s)	489, 708
BsmAI	GTCTC	4 cut(s)	444, 483, 570, 662
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	805
BsnI	GGCC	1 cut(s)	638
Bso31I	GGTCTC	1 cut(s)	570
BsoBI	CYCGRG	1 cut(s)	580
Bsp13I	TCCGGA	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	267, 678, 879, 941
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	3 cut(s)	138, 245, 317
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	1 cut(s)	290
BspEI	TCCGGA	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	423, 700
BspPI	GGATC	2 cut(s)	262, 936
BspT107I	GGYRCC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	570
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	5 cut(s)	15, 271, 580, 581, 906
BssMI	GATC	4 cut(s)	267, 678, 879, 941
BssT1I	CCWWGG	2 cut(s)	15, 271
Bst4CI	ACNGT	3 cut(s)	592, 659, 984
Bst6I	CTCTTC	3 cut(s)	84, 452, 952
BstDEI	CTNAG	2 cut(s)	277, 759
BstDSI	CCRYGG	2 cut(s)	15, 906
BstF5I	GGATG	2 cut(s)	93, 511
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	4 cut(s)	270, 681, 882, 944
BstMAI	GTCTC	4 cut(s)	444, 483, 570, 662
BstMBI	GATC	4 cut(s)	267, 678, 879, 941
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstSCI	CCNGG	4 cut(s)	423, 579, 580, 847
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	823
BstV2I	GAAGAC	1 cut(s)	978
BstX2I	RGATCY	1 cut(s)	941
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	941
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	2 cut(s)	15, 906
BtsCI	GGATG	2 cut(s)	93, 511
BtsIMutI	CAGTG	1 cut(s)	588
Cfr13I	GGNCC	2 cut(s)	19, 421
Cfr9I	CCCGGG	1 cut(s)	580
Csp6I	GTAC	5 cut(s)	301, 324, 347, 469, 754
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	276, 428, 638, 914, 936, 1006
CviKI_1	RGCY	6 cut(s)	276, 428, 638, 914, 936, 1006
CviQI	GTAC	5 cut(s)	301, 324, 347, 469, 754
DdeI	CTNAG	2 cut(s)	277, 759
DpnI	GATC	4 cut(s)	269, 680, 881, 943
DpnII	GATC	4 cut(s)	267, 678, 879, 941
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	3 cut(s)	84, 452, 952
EarI	CTCTTC	3 cut(s)	84, 452, 952
Eco130I	CCWWGG	2 cut(s)	15, 271
Eco31I	GGTCTC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	19, 421
Eco88I	CYCGRG	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	15, 271
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	2 cut(s)	15, 271
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	1 cut(s)	19
FaiI	YATR	8 cut(s)	17, 378, 675, 746, 750, 752, 894, 896
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	1 cut(s)	15
FauI	CCCGC	2 cut(s)	145, 310
FauNDI	CATATG	1 cut(s)	750
Fnu4HI	GCNGC	1 cut(s)	837
FokI	GGATG	2 cut(s)	80, 518
Fsp4HI	GCNGC	1 cut(s)	837
FspBI	CTAG	4 cut(s)	369, 647, 923, 939
GluI	GCNGC	1 cut(s)	837
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	4 cut(s)	406, 425, 581, 848
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	4 cut(s)	5, 263, 716, 785
HpaII	CCGG	4 cut(s)	406, 425, 581, 848
HphI	GGTGA	3 cut(s)	106, 113, 178
Hpy166II	GTNNAC	2 cut(s)	347, 906
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	4 cut(s)	369, 406, 652, 939
Hpy8I	GTNNAC	2 cut(s)	347, 906
HpyAV	CCTTC	5 cut(s)	187, 231, 550, 750, 760
HpyCH4III	ACNGT	3 cut(s)	592, 659, 984
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	565, 748, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	2 cut(s)	277, 759
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	267, 678, 879, 941
Lsp1109I	GCAGC	1 cut(s)	823
LweI	GCATC	3 cut(s)	496, 814, 848
MaeI	CTAG	4 cut(s)	369, 647, 923, 939
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	2 cut(s)	642, 918
MalI	GATC	4 cut(s)	269, 680, 881, 943
MboI	GATC	4 cut(s)	267, 678, 879, 941
MflI	RGATCY	1 cut(s)	941
MluCI	AATT	3 cut(s)	610, 775, 961
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	4 cut(s)	181, 420, 673, 693
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	2 cut(s)	396, 771
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	4 cut(s)	406, 425, 581, 848
MspR9I	CCNGG	4 cut(s)	425, 581, 582, 849
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	833
NciI	CCSGG	4 cut(s)	425, 581, 582, 849
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	750
NdeII	GATC	4 cut(s)	267, 678, 879, 941
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	423, 700
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	918
NsiI	ATGCAT	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	716, 785
PflMI	CCANNNNNTGG	1 cut(s)	708
PfoI	TCCNGGA	1 cut(s)	847
PkrI	GCNGC	1 cut(s)	838
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	423, 700
PspPI	GGNCC	2 cut(s)	19, 421
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	941
RsaI	GTAC	5 cut(s)	302, 325, 348, 470, 755
RsaNI	GTAC	5 cut(s)	301, 324, 347, 469, 754
RseI	CAYNNNNRTG	1 cut(s)	632
SaqAI	TTAA	2 cut(s)	396, 771
SatI	GCNGC	1 cut(s)	837
Sau3AI	GATC	4 cut(s)	267, 678, 879, 941
Sau96I	GGNCC	2 cut(s)	19, 421
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	4 cut(s)	425, 581, 582, 849
SfaNI	GCATC	3 cut(s)	496, 814, 848
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	19, 421
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SpeI	ACTAGT	2 cut(s)	646, 922
Sse9I	AATT	3 cut(s)	610, 775, 961
SsiI	CCGC	3 cut(s)	138, 245, 317
SspI	AATATT	1 cut(s)	362
SspMI	CTAG	4 cut(s)	369, 647, 923, 939
StyD4I	CCNGG	4 cut(s)	423, 579, 580, 847
StyI	CCWWGG	2 cut(s)	15, 271
TaaI	ACNGT	3 cut(s)	592, 659, 984
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	266, 882, 1001
TasI	AATT	3 cut(s)	610, 775, 961
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	716, 785
Tru1I	TTAA	2 cut(s)	396, 771
Tru9I	TTAA	2 cut(s)	396, 771
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	918
TseI	GCWGC	1 cut(s)	836
Tsp45I	GTSAC	1 cut(s)	918
TspDTI	ATGAA	2 cut(s)	373, 552
TspGWI	ACGGA	1 cut(s)	923
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	2 cut(s)	19, 421
XapI	RAATTY	2 cut(s)	610, 775
XbaI	TCTAGA	2 cut(s)	368, 938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmaI	CCCGGG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	4 cut(s)	369, 647, 923, 939
ZrmI	AGTACT	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.