Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

5957905 .. 5959932

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGTCCTCTCCTGTTCTTCTCCACCATTCCAAACCCACCCCAAAACCCAGAAACCACTCACTTCACTACCAATCTCTCTTCCTAAAACCTCCATTCTCACCTCTCAATCATTCAACTCCCATCCCCTTCAATTTTCCTCCATCAAAAACCTCTTTCACAACCAACCTAAAACCCATCTCTCCTTTCTCCTCACTGAGCTCATCGCAACCACCGCCATTACTTTCCCTTCTTTTTCTTTCGAAGGCGCAGCTTCCGAGCAAGTTTTAGACAAAATAAACTTGGAGTCAATCCTGGTCTCAATTGATGAGTTTTTCAACAAGTACCCATATTTCATTGCCGGTTGTATGTTCATTTGGTTGGTTGGTGTACCTGTAGTTCAAGAGTACTTGAGAAAATATAAACCATTCCGGAAACTCAAAGAGGACCTCACTGCTCAGCTATTGGATATTAGGGACGAGAAGAGTTTGAAGTATTTGAGGTCTCCCAACTTGAAGATTGTCAAAAAGGATACTGTGCAGGTTCAGTTTTCAGAGGATGATGAAGATGGGTTTGTAAAGAAGGTTTTGCAGAAGTTCAGAGGCCTAGGAAACACTGTTGTCTCCCGATCCCTAAAATATATTTCGATATGGACTATCGAAATCCATATACAACTCAAATATCAATTTTTACAAACCCCGATCTCAACTTTTACAAACTTGGATCTCAAGAAAAGAAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

27.65

Weight (kDa)

9.5

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccIII	TCCGGA	1 cut(s)	408
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	600, 708
AfaI	GTAC	3 cut(s)	323, 369, 386
AgsI	TTSAA	6 cut(s)	115, 131, 316, 380, 469, 493
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	3 cut(s)	199, 251, 439
AluI	AGCT	3 cut(s)	199, 251, 439
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	3 cut(s)	301, 486, 604
AlwI	GGATC	2 cut(s)	600, 708
Aor13HI	TCCGGA	1 cut(s)	408
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	248
AspA2I	CCTAGG	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	4, 424
AsuHPI	GGTGA	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	4, 424
AvrII	CCTAGG	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	4 cut(s)	129, 149, 183, 539
BciT130I	CCWGG	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	502
BcoDI	GTCTC	3 cut(s)	301, 486, 604
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	249
BlnI	CCTAGG	1 cut(s)	583
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	250
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	2 cut(s)	4, 424
BmgT120I	GGNCC	2 cut(s)	4, 424
BmrFI	CCNGG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	409, 689
BsaI	GGTCTC	2 cut(s)	301, 486
BsaJI	CCNNGG	1 cut(s)	583
BsaWI	WCCGGW	1 cut(s)	408
Bse118I	RCCGGY	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	2 cut(s)	121, 541
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	186, 449
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	339, 409
BslFI	GGGAC	1 cut(s)	467
BsmAI	GTCTC	3 cut(s)	301, 486, 604
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	582
Bso31I	GGTCTC	2 cut(s)	301, 486
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	605, 678, 700
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	2 cut(s)	187, 448
BspEI	TCCGGA	1 cut(s)	408
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	2 cut(s)	600, 708
BspT104I	TTCGAA	1 cut(s)	240
BspTNI	GGTCTC	2 cut(s)	301, 486
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	3 cut(s)	605, 678, 700
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	514, 595
Bst6I	CTCTTC	2 cut(s)	84, 455
BstBI	TTCGAA	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	195, 435
BstF5I	GGATG	2 cut(s)	121, 541
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	3 cut(s)	608, 681, 703
BstMAI	GTCTC	3 cut(s)	301, 486, 604
BstMBI	GATC	3 cut(s)	605, 678, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	121, 541
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	192, 429, 591
BveI	ACCTGC	1 cut(s)	508
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	4, 424
Csp6I	GTAC	3 cut(s)	322, 368, 385
CviJI	RGCY	4 cut(s)	199, 251, 439, 582
CviKI_1	RGCY	4 cut(s)	199, 251, 439, 582
CviQI	GTAC	3 cut(s)	322, 368, 385
DdeI	CTNAG	2 cut(s)	195, 435
DpnI	GATC	3 cut(s)	607, 680, 702
DpnII	GATC	3 cut(s)	605, 678, 700
Eam1104I	CTCTTC	2 cut(s)	84, 455
EarI	CTCTTC	2 cut(s)	84, 455
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	583
Eco147I	AGGCCT	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	2 cut(s)	301, 486
Eco47I	GGWCC	2 cut(s)	4, 424
Eco53kI	GAGCTC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	583
FaiI	YATR	7 cut(s)	328, 347, 399, 618, 628, 645, 647
FaqI	GGGAC	1 cut(s)	467
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	108, 548
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	2 cut(s)	339, 409
HhaI	GCGC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	2 cut(s)	339, 409
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	3 cut(s)	256, 532, 578
Hpy188III	TCNNGA	4 cut(s)	380, 409, 603, 706
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	4 cut(s)	137, 236, 237, 553
HpyCH4III	ACNGT	2 cut(s)	514, 595
HpyCH4V	TGCA	2 cut(s)	517, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	195, 435
HspAI	GCGC	1 cut(s)	246
Kpn2I	TCCGGA	1 cut(s)	408
Kzo9I	GATC	3 cut(s)	605, 678, 700
LpnPI	CCDG	8 cut(s)	25, 62, 278, 305, 352, 384, 422, 503
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	584
MalI	GATC	3 cut(s)	607, 680, 702
MboI	GATC	3 cut(s)	605, 678, 700
MboII	GAAGA	5 cut(s)	9, 71, 472, 505, 554
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	131, 300, 662, 718
MlyI	GAGTC	1 cut(s)	293
MroI	TCCGGA	1 cut(s)	408
MseI	TTAA	1 cut(s)	721
MspI	CCGG	2 cut(s)	339, 409
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	3 cut(s)	605, 678, 700
NspV	TTCGAA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	582
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	4, 424
PspPPI	RGGWCCY	1 cut(s)	424
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	3 cut(s)	323, 369, 386
RsaNI	GTAC	3 cut(s)	322, 368, 385
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	721
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	605, 678, 700
Sau96I	GGNCC	2 cut(s)	4, 424
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	2 cut(s)	4, 424
SmlI	CTYRAG	2 cut(s)	388, 704
SmoI	CTYRAG	2 cut(s)	388, 704
Sse9I	AATT	4 cut(s)	131, 300, 662, 718
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	584
SstI	GAGCTC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	2 cut(s)	514, 595
TaqI	TCGA	3 cut(s)	240, 623, 636
TasI	AATT	4 cut(s)	131, 300, 662, 718
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	721
Tru9I	TTAA	1 cut(s)	721
TscAI	CASTG	3 cut(s)	199, 436, 598
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	322, 340, 555
TspRI	CASTG	3 cut(s)	199, 436, 598
VpaK11BI	GGWCC	2 cut(s)	4, 424
XmaJI	CCTAGG	1 cut(s)	583
XspI	CTAG	1 cut(s)	584
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.