Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

47741317 .. 47743940

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG262600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGTAGTTTTTACAGTACTATCCATACCCGACCATTCAATGACCATCGTTCGCCTTCTTGGCCTTATCCTCTCTCCCTTTCTCCCTCTCTCACTTTCCTGTACTCTCCCATGGAGTCTCTTTCCATGGTCCTCTCCTGTTCTTCTCCACCACTCCAAACCCACCTCAAAACCCAGAAACCACTCACTTCACTGCCAATCTCTCTTCCCAAAACCTCCATTCTTACCTCCCAATCATTCAACTCCCACCACCCTCATTTTCCCTCCCTTAAAAACCTCTTTCACAACAAACCCAAAACCCATCTCTCCTTTCTCCTCACTGAGCTCATCGCAACCACCGCCATTACTCTCCCTTCTTTTGCTTCCGAAGCCGCAGTTTCCGATCAAGTTTCAGACAAAATAAACTTGGAGTCAATCCTGGTCTCAATTGATGAGTTTTTCAACAAGTACCCATATTTCGTTGCCGGTTGTACGTTCATTTGGTTGGTTGGTGTACCTGTAGTTCAAGAGTACTTGAGAAAATATAAGTTCATCTCTGTTCTTAATGCATTCCGGAAACTCAAAGAGGACCCCACTGTTCAGCTATTGGATATTAGGGACGACAAGAGTTTGAAGTATTTGAAGTCTCCCAACTTGAAGATTGTGAATAAGGACACTGTGCAGGTTCAGTTTTCCGAGGATGATGGAGATGGATTTGTAAAGAAGGTTTTGGAGAAGTTCGGAGACCCAGCAAACACTGTCGTCTGTGTTTTGGGAAATTTTGATGATATTTCCATCAAAGTGGCCGAGTTACTGGTGAAGAATGGTTTCAAAGAGACTTATGCAATCAAGGGAGGGGTTGGAGGCACGAAAGGGTGGTTGGAATCACAGGAAACTCTTTTGCCACCTTCTATGCATATGTACCCCAAGAAGAAGGTTAAAACTGCAAAAGAAACTGGGATGAATGGTGGAGTTGTTCAGCAAAATGAAGATGGCAATAATACTGCATCTTCTTCCGGAAATGTTCCCGTAGCAGAAAAGCAAAGGATCAACAACGGACACATAAGCAAGTCCACGAAGGCTGTGTCACCAGTGAAAGATGGCTCGAGATCCTCTTCTCCCTACCCAAGTTACCCAGATTTGAAACCACCATCTTCCCCAACTCCATCGAAGCCCCGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

42.74

Weight (kDa)

9.24

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AccIII	TCCGGA	2 cut(s)	552, 995
AciI	CCGC	2 cut(s)	339, 372
AclWI	GGATC	2 cut(s)	1034, 1083
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	1 cut(s)	757
AfaI	GTAC	7 cut(s)	19, 104, 449, 472, 495, 512, 902
AgsI	TTSAA	9 cut(s)	40, 241, 442, 506, 613, 622, 637, 811, 1123
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	2 cut(s)	325, 583
AluI	AGCT	2 cut(s)	325, 583
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	5 cut(s)	123, 427, 630, 717, 809
AlwI	GGATC	2 cut(s)	1034, 1083
Ama87I	CYCGRG	1 cut(s)	1084
Aor13HI	TCCGGA	2 cut(s)	552, 995
AoxI	GGCC	2 cut(s)	62, 783
ApoI	RAATTY	1 cut(s)	757
ArsI	GACNNNNNNTTYG	2 cut(s)	1049, 1081
Asp700I	GAANNNNTTC	1 cut(s)	806
AspS9I	GGNCC	2 cut(s)	130, 568
AsuHPI	GGTGA	2 cut(s)	808, 1059
AvaI	CYCGRG	1 cut(s)	1084
AvaII	GGWCC	2 cut(s)	130, 568
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	9 cut(s)	54, 309, 677, 683, 782, 965, 1073, 1138, 1153
BciT130I	CCWGG	1 cut(s)	419
BcoDI	GTCTC	5 cut(s)	123, 427, 630, 717, 809
BfmI	CTRYAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	2 cut(s)	19, 512
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	2 cut(s)	130, 568
BmeT110I	CYCGRG	1 cut(s)	1084
BmgT120I	GGNCC	2 cut(s)	130, 568
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	1 cut(s)	995
BmuI	ACTGGG	1 cut(s)	945
BpuEI	CTTGAG	1 cut(s)	535
BsaI	GGTCTC	2 cut(s)	427, 717
BsaJI	CCNNGG	3 cut(s)	111, 126, 675
BsaWI	WCCGGW	2 cut(s)	552, 995
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	3 cut(s)	798, 940, 1070
BseAI	TCCGGA	2 cut(s)	552, 995
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	3 cut(s)	111, 126, 675
BseGI	GGATG	2 cut(s)	685, 945
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	798, 940, 1070
BseRI	GAGGAG	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	727
BsgI	GTGCAG	1 cut(s)	680
BshFI	GGCC	2 cut(s)	64, 785
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	1084
BsiSI	CCGG	3 cut(s)	465, 553, 996
BslFI	GGGAC	1 cut(s)	611
BsmAI	GTCTC	5 cut(s)	123, 427, 630, 717, 809
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	64, 785
Bso31I	GGTCTC	2 cut(s)	427, 717
BsoBI	CYCGRG	1 cut(s)	1084
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp13I	TCCGGA	2 cut(s)	552, 995
Bsp143I	GATC	3 cut(s)	382, 1026, 1088
Bsp19I	CCATGG	2 cut(s)	111, 126
BspACI	CCGC	2 cut(s)	339, 372
BspANI	GGCC	2 cut(s)	64, 785
BspCNI	CTCAG	1 cut(s)	313
BspEI	TCCGGA	2 cut(s)	552, 995
BspLI	GGNNCC	1 cut(s)	570
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	1034, 1083
BspTNI	GGTCTC	2 cut(s)	427, 717
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	798, 940, 1070
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	111, 126, 675
BssMI	GATC	3 cut(s)	382, 1026, 1088
BssT1I	CCWWGG	2 cut(s)	111, 126
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	4 cut(s)	17, 577, 658, 739
Bst6I	CTCTTC	2 cut(s)	210, 1099
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	2 cut(s)	111, 126
BstF5I	GGATG	2 cut(s)	685, 945
BstKTI	GATC	3 cut(s)	385, 1029, 1091
BstMAI	GTCTC	5 cut(s)	123, 427, 630, 717, 809
BstMBI	GATC	3 cut(s)	382, 1026, 1088
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 338, 368
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	1088
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	1088
BsuRI	GGCC	2 cut(s)	64, 785
BtgI	CCRYGG	2 cut(s)	111, 126
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	685, 945
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	6 cut(s)	191, 318, 573, 654, 735, 1077
BveI	ACCTGC	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	130, 568
Csp6I	GTAC	7 cut(s)	18, 103, 448, 471, 494, 511, 901
CviAII	CATG	2 cut(s)	112, 127
CviJI	RGCY	8 cut(s)	64, 325, 371, 583, 785, 1061, 1083, 1153
CviKI_1	RGCY	8 cut(s)	64, 325, 371, 583, 785, 1061, 1083, 1153
CviQI	GTAC	7 cut(s)	18, 103, 448, 471, 494, 511, 901
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	384, 1028, 1090
DpnII	GATC	3 cut(s)	382, 1026, 1088
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	210, 1099
EarI	CTCTTC	2 cut(s)	210, 1099
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	111, 126
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	2 cut(s)	427, 717
Eco47I	GGWCC	2 cut(s)	130, 568
Eco53kI	GAGCTC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	1084
EcoICRI	GAGCTC	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	111, 126
EcoT22I	ATGCAT	2 cut(s)	550, 897
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	111, 126
FaeI	CATG	2 cut(s)	115, 130
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	2 cut(s)	111, 126
FauNDI	CATATG	1 cut(s)	897
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	692, 952
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
GsaI	CCCAGC	1 cut(s)	731
HaeIII	GGCC	2 cut(s)	64, 785
HapII	CCGG	3 cut(s)	465, 553, 996
Hin1II	CATG	2 cut(s)	115, 130
HinfI	GANTC	3 cut(s)	116, 410, 863
HpaII	CCGG	3 cut(s)	465, 553, 996
HphI	GGTGA	2 cut(s)	808, 1059
Hpy166II	GTNNAC	2 cut(s)	494, 1053
Hpy188I	TCNGA	5 cut(s)	367, 382, 394, 676, 722
Hpy188III	TCNNGA	4 cut(s)	506, 553, 996, 1086
Hpy8I	GTNNAC	2 cut(s)	494, 1053
HpyAV	CCTTC	6 cut(s)	66, 363, 697, 897, 907, 1051
HpyCH4III	ACNGT	4 cut(s)	17, 577, 658, 739
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	548, 661, 824, 895, 926, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 338, 368
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	115, 130
Kpn2I	TCCGGA	2 cut(s)	552, 995
Kzo9I	GATC	3 cut(s)	382, 1026, 1088
LweI	GCATC	1 cut(s)	995
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	3 cut(s)	789, 1065, 1109
MalI	GATC	3 cut(s)	384, 1028, 1090
MboI	GATC	3 cut(s)	382, 1026, 1088
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	1088
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	426, 757
MlyI	GAGTC	2 cut(s)	125, 419
MmeI	TCCRAC	2 cut(s)	820, 840
Mph1103I	ATGCAT	2 cut(s)	550, 897
MroI	TCCGGA	2 cut(s)	552, 995
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	3 cut(s)	270, 543, 918
MslI	CAYNNNNRTG	1 cut(s)	779
MspI	CCGG	3 cut(s)	465, 553, 996
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	61, 338, 368
NcoI	CCATGG	2 cut(s)	111, 126
NdeI	CATATG	1 cut(s)	897
NdeII	GATC	3 cut(s)	382, 1026, 1088
NlaIII	CATG	2 cut(s)	115, 130
NlaIV	GGNNCC	1 cut(s)	570
NmeAIII	GCCGAG	1 cut(s)	811
NmuCI	GTSAC	1 cut(s)	1065
NsiI	ATGCAT	2 cut(s)	550, 897
PaeR7I	CTCGAG	1 cut(s)	1084
PctI	GAATGC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	1 cut(s)	863
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	2 cut(s)	124, 418
PpsI	GAGTC	2 cut(s)	124, 418
PpuMI	RGGWCCY	1 cut(s)	568
Psp124BI	GAGCTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	2 cut(s)	130, 568
PspPPI	RGGWCCY	1 cut(s)	568
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PsuI	RGATCY	1 cut(s)	1088
RsaI	GTAC	7 cut(s)	19, 104, 449, 472, 495, 512, 902
RsaNI	GTAC	7 cut(s)	18, 103, 448, 471, 494, 511, 901
RseI	CAYNNNNRTG	1 cut(s)	779
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	270, 543, 918
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	3 cut(s)	382, 1026, 1088
Sau96I	GGNCC	2 cut(s)	130, 568
ScaI	AGTACT	2 cut(s)	19, 512
SchI	GAGTC	2 cut(s)	125, 419
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	995
SfcI	CTRYAG	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	1084
SinI	GGWCC	2 cut(s)	130, 568
SlaI	CTCGAG	1 cut(s)	1084
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	2 cut(s)	514, 1084
SmoI	CTYRAG	2 cut(s)	514, 1084
Sse9I	AATT	2 cut(s)	426, 757
SsiI	CCGC	2 cut(s)	339, 372
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	2 cut(s)	111, 126
TaaI	ACNGT	4 cut(s)	17, 577, 658, 739
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	2 cut(s)	1085, 1148
TasI	AATT	2 cut(s)	426, 757
TatI	WGTACW	3 cut(s)	17, 102, 510
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	863
Tru1I	TTAA	3 cut(s)	270, 543, 918
Tru9I	TTAA	3 cut(s)	270, 543, 918
TscAI	CASTG	6 cut(s)	198, 325, 580, 661, 742, 1077
TseFI	GTSAC	1 cut(s)	1065
Tsp45I	GTSAC	1 cut(s)	1065
TspDTI	ATGAA	4 cut(s)	466, 520, 956, 981
TspGWI	ACGGA	1 cut(s)	1050
TspRI	CASTG	6 cut(s)	198, 325, 580, 661, 742, 1077
VpaK11BI	GGWCC	2 cut(s)	130, 568
XapI	RAATTY	1 cut(s)	757
XhoI	CTCGAG	1 cut(s)	1084
XmnI	GAANNNNTTC	1 cut(s)	806
ZrmI	AGTACT	2 cut(s)	19, 512
Zsp2I	ATGCAT	2 cut(s)	550, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.