Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

44350943 .. 44353206

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATCTTACAACAAAATTTTTCCGATCAAGTTTCAGACAAAATAAACTTGGAGTCAATCCTGGTCTCAATTGATGAGTTTTTCAACAAGTACCCATATTTCGTTGCCGGTTGTACGTTCATTTGGTTGGTTGGTGTACCCGTAGTTCAAGAGTACTTGAGAAAATATAAGTTCATCTCTGTTCTTAATGCATTCCGGAAACTCAAAGAGGACCCCACTGTTCAGCTATTGGATATTAGGGACGGCAAGAGTTTGAAGTATTTGAAGTCTCCCAACTTGAAGATTGTGAATAAGGATACTGTGCAGGTTCAGTTTTCCGAGGATGATGGAGATGGGTTTGTAAAGAAGGTTTTGCAGAAGTTCGGAGACCCAACGAACACTGTTGTCTGTGTTTTAGGAAATTTTGATGATGTTTCCATCAAAGTGGCCGAGTTACTAGTGAAGAATGGTTTCAAAGAGACTTATGCAATCAAGGGAGGGGTTGGAGGCACGAAAGGGTGGCTGGAATCACAGGAAACTCTTTTGCCACCTTCTATGCATATGTACCCCAAGAAGAAGGTTAAAACTGCAAAAGAAACTGGGATGAATGGTGGAGTTGTTCAGCGAAATGAAGATGGCAATAATGCTGCATCTTCTTCTGGAAATGTTCCCGTAGCAGAAAAGCAAAGGATCGACAACGGACACATAAGCAAGTCCACGAAGGTTGTGTCACCAGTGAAAGATGGCTCGAGATCCTCTTCTCCCTACCCAAGTTACCCAGATTTGAAACCACCATCTTCCCCAACTCCATCGAAGCCCCGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

29.63

Weight (kDa)

9.24

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	195
AclWI	GGATC	2 cut(s)	677, 726
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	16, 400
AfaI	GTAC	5 cut(s)	92, 115, 138, 155, 545
AgsI	TTSAA	7 cut(s)	85, 149, 256, 265, 280, 454, 766
AhlI	ACTAGT	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	4 cut(s)	70, 273, 360, 452
AlwI	GGATC	2 cut(s)	677, 726
Ama87I	CYCGRG	1 cut(s)	727
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	2 cut(s)	16, 400
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	702
AvaI	CYCGRG	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	7 cut(s)	320, 326, 425, 608, 716, 781, 796
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	4 cut(s)	70, 273, 360, 452
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	1 cut(s)	638
BmuI	ACTGGG	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	178
BsaI	GGTCTC	2 cut(s)	70, 360
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	583, 713
BseAI	TCCGGA	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	328, 588
BseNI	ACTGG	2 cut(s)	583, 713
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	2 cut(s)	108, 196
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	4 cut(s)	70, 273, 360, 452
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	428
Bso31I	GGTCTC	2 cut(s)	70, 360
BsoBI	CYCGRG	1 cut(s)	727
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	3, 25, 669, 731
BspANI	GGCC	1 cut(s)	428
BspEI	TCCGGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	677, 726
BspTNI	GGTCTC	2 cut(s)	70, 360
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	583, 713
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	4 cut(s)	3, 25, 669, 731
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	220, 301, 382
Bst6I	CTCTTC	1 cut(s)	742
BstF5I	GGATG	2 cut(s)	328, 588
BstKTI	GATC	4 cut(s)	6, 28, 672, 734
BstMAI	GTCTC	4 cut(s)	70, 273, 360, 452
BstMBI	GATC	4 cut(s)	3, 25, 669, 731
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	328, 588
BtsIMutI	CAGTG	3 cut(s)	216, 378, 720
BveI	ACCTGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	5 cut(s)	91, 114, 137, 154, 544
CspCI	CAANNNNNGTGG	2 cut(s)	685, 720
CviJI	RGCY	5 cut(s)	226, 428, 502, 726, 796
CviKI_1	RGCY	5 cut(s)	226, 428, 502, 726, 796
CviQI	GTAC	5 cut(s)	91, 114, 137, 154, 544
DpnI	GATC	4 cut(s)	5, 27, 671, 733
DpnII	GATC	4 cut(s)	3, 25, 669, 731
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Eco31I	GGTCTC	2 cut(s)	70, 360
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	727
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	60
EcoT22I	ATGCAT	2 cut(s)	193, 540
FaiI	YATR	7 cut(s)	97, 168, 465, 536, 540, 542, 686
FaqI	GGGAC	1 cut(s)	254
FauNDI	CATATG	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	2 cut(s)	335, 595
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	2 cut(s)	108, 196
HinfI	GANTC	2 cut(s)	53, 506
HpaII	CCGG	2 cut(s)	108, 196
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	2 cut(s)	137, 696
Hpy188I	TCNGA	4 cut(s)	25, 37, 319, 365
Hpy188III	TCNNGA	4 cut(s)	149, 196, 639, 729
Hpy8I	GTNNAC	2 cut(s)	137, 696
HpyAV	CCTTC	4 cut(s)	340, 540, 550, 694
HpyCH4III	ACNGT	3 cut(s)	220, 301, 382
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	7 cut(s)	191, 304, 355, 467, 538, 569, 629
HpySE526I	ACGT	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	3, 25, 669, 731
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	638
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	432, 708, 752
MalI	GATC	4 cut(s)	5, 27, 671, 733
MboI	GATC	4 cut(s)	3, 25, 669, 731
MboII	GAAGA	8 cut(s)	292, 454, 565, 623, 624, 627, 729, 768
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	731
MluCI	AATT	3 cut(s)	16, 69, 400
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	5 cut(s)	202, 313, 470, 479, 745
Mph1103I	ATGCAT	2 cut(s)	193, 540
MroI	TCCGGA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	186, 561
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	2 cut(s)	108, 196
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	4 cut(s)	3, 25, 669, 731
NlaIV	GGNNCC	1 cut(s)	213
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	708
NsiI	ATGCAT	2 cut(s)	193, 540
PaeR7I	CTCGAG	1 cut(s)	727
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsrI	GAACNNNNNNTAC	2 cut(s)	129, 161
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	5 cut(s)	92, 115, 138, 155, 545
RsaNI	GTAC	5 cut(s)	91, 114, 137, 154, 544
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	186, 561
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	4 cut(s)	3, 25, 669, 731
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	7 cut(s)	119, 228, 309, 351, 532, 561, 705
SfaNI	GCATC	1 cut(s)	638
Sfr274I	CTCGAG	1 cut(s)	727
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	2 cut(s)	157, 727
SmoI	CTYRAG	2 cut(s)	157, 727
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	3 cut(s)	16, 69, 400
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	220, 301, 382
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	672, 728, 791
TasI	AATT	3 cut(s)	16, 69, 400
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	186, 561
Tru9I	TTAA	2 cut(s)	186, 561
TscAI	CASTG	3 cut(s)	223, 385, 720
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	4 cut(s)	109, 163, 599, 624
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	3 cut(s)	223, 385, 720
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	16, 400
XhoI	CTCGAG	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	155
Zsp2I	ATGCAT	2 cut(s)	193, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.