Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011940.1

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

35127 .. 37194

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011940.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggagtctctttccatggtcctctcctgttcttctccaccactccaaacccacctcaaaacccagaaaccactcacttcactaccaatctctcttcccaaaacctccattattacctcccaatcattcaactcccaccaccctcattttccctcccttaaaaacctctttcacaacaaacccaaaacccatctctcctttctcctcactgagctcatcgcaaccaccgccattactctcccttcttttgcttccgaagccgcagtttccgatcaagtttcagacaaaataaacttggagtcaatcctggtctcaattgatgagtttttcaccaagtacccatatttcgttgctggttgtacgttcatttggttggttggtgtacctgtagttcaagagtacttgagaaaatataagttcatctctgttcttaatgcattccggaaactcaaagaggaccccactgttcagctattggatattagggacggcaagagtttgaagtatttgaagtctcccaacttgaagattgtgaataaggatactgtgcaggttcagttttccgaggatgatggagatgggtttgtaaagaaggtcttgcagaagttcggagacccagcaaacactgttgtctgtgttttgggaaattttgatgatgtttccatcaaagtggccgagttactagtgaagaatggtttcaaagagacttatgcaatcaagggaggggttggaggcacgaaagggtggttggaatcacaggaaactcttttgccaccttctatgcatatgtaccccaagaagaaggttaaaactgcaaaagaaactgggatgaatggtggagttgttcagcgaaatgaagatggcaataatgctgcatcttcttctggaaatgttcccgtagcagaaaagcaaaggatcgacaacggacacataagcaagtccacgaaggctgtgtcaccagtgaaagatggctcgagatcctcttctccctacccaagttacccagatttgaaaccaccatcttccccaactccatcgaagccccgaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.38

Weight (kDa)

9.33

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	541
AccIII	TCCGGA	1 cut(s)	441
AciI	CCGC	2 cut(s)	228, 261
AclWI	GGATC	2 cut(s)	923, 972
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	646
AfaI	GTAC	5 cut(s)	338, 361, 384, 401, 791
AgsI	TTSAA	7 cut(s)	130, 395, 502, 511, 526, 700, 1012
AhlI	ACTAGT	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	306
AjuI	GAANNNNNNNTTGG	2 cut(s)	731, 763
AluBI	AGCT	2 cut(s)	214, 472
AluI	AGCT	2 cut(s)	214, 472
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	5 cut(s)	12, 316, 519, 606, 698
AlwI	GGATC	2 cut(s)	923, 972
Ama87I	CYCGRG	1 cut(s)	973
Aor13HI	TCCGGA	1 cut(s)	441
AoxI	GGCC	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	872
ApoI	RAATTY	1 cut(s)	646
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
Asp700I	GAANNNNTTC	1 cut(s)	695
AspS9I	GGNCC	2 cut(s)	19, 457
AsuHPI	GGTGA	2 cut(s)	322, 948
AvaI	CYCGRG	1 cut(s)	973
AvaII	GGWCC	2 cut(s)	19, 457
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	859
BccI	CCATC	8 cut(s)	198, 566, 572, 671, 854, 962, 1027, 1042
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	535
BcoDI	GTCTC	5 cut(s)	12, 316, 519, 606, 698
BcuI	ACTAGT	1 cut(s)	682
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	261, 873
BlsI	GCNGC	2 cut(s)	262, 874
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	2 cut(s)	19, 457
BmeT110I	CYCGRG	1 cut(s)	973
BmgT120I	GGNCC	2 cut(s)	19, 457
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	1 cut(s)	884
BmuI	ACTGGG	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	424
BsaI	GGTCTC	2 cut(s)	316, 606
BsaJI	CCNNGG	2 cut(s)	15, 564
BsaWI	WCCGGW	1 cut(s)	441
Bse1I	ACTGG	2 cut(s)	829, 959
BseAI	TCCGGA	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	15, 564
BseGI	GGATG	2 cut(s)	574, 834
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	829, 959
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	859
BseYI	CCCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	973
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	500
BsmAI	GTCTC	5 cut(s)	12, 316, 519, 606, 698
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	674
Bso31I	GGTCTC	2 cut(s)	316, 606
BsoBI	CYCGRG	1 cut(s)	973
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	271, 915, 977
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	228, 261
BspANI	GGCC	1 cut(s)	674
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	923, 972
BspTNI	GGTCTC	2 cut(s)	316, 606
BsrI	ACTGG	2 cut(s)	829, 959
BssECI	CCNNGG	2 cut(s)	15, 564
BssMI	GATC	3 cut(s)	271, 915, 977
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	3 cut(s)	466, 547, 628
Bst6I	CTCTTC	2 cut(s)	99, 988
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	574, 834
BstKTI	GATC	3 cut(s)	274, 918, 980
BstMAI	GTCTC	5 cut(s)	12, 316, 519, 606, 698
BstMBI	GATC	3 cut(s)	271, 915, 977
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 257
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	859
BstX2I	RGATCY	1 cut(s)	977
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	977
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	674
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	574, 834
BtsIMutI	CAGTG	4 cut(s)	207, 462, 624, 966
BveI	ACCTGC	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	19, 457
Csp6I	GTAC	5 cut(s)	337, 360, 383, 400, 790
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	7 cut(s)	214, 260, 472, 674, 950, 972, 1042
CviKI_1	RGCY	7 cut(s)	214, 260, 472, 674, 950, 972, 1042
CviQI	GTAC	5 cut(s)	337, 360, 383, 400, 790
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	3 cut(s)	273, 917, 979
DpnII	GATC	3 cut(s)	271, 915, 977
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	2 cut(s)	99, 988
EarI	CTCTTC	2 cut(s)	99, 988
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	316, 606
Eco47I	GGWCC	2 cut(s)	19, 457
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	973
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	15
EcoT22I	ATGCAT	2 cut(s)	439, 786
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	19
FaiI	YATR	8 cut(s)	17, 343, 414, 711, 782, 786, 788, 932
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	1 cut(s)	15
FauNDI	CATATG	1 cut(s)	786
Fnu4HI	GCNGC	2 cut(s)	261, 873
FokI	GGATG	2 cut(s)	581, 841
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	261, 873
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	2 cut(s)	261, 873
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	674
HapII	CCGG	1 cut(s)	442
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	3 cut(s)	5, 299, 752
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	2 cut(s)	322, 948
Hpy166II	GTNNAC	2 cut(s)	383, 942
Hpy188I	TCNGA	5 cut(s)	256, 271, 283, 565, 611
Hpy188III	TCNNGA	4 cut(s)	395, 442, 885, 975
Hpy8I	GTNNAC	2 cut(s)	383, 942
HpyAV	CCTTC	5 cut(s)	252, 586, 786, 796, 940
HpyCH4III	ACNGT	3 cut(s)	466, 547, 628
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	7 cut(s)	437, 550, 601, 713, 784, 815, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 257
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	271, 915, 977
Lsp1109I	GCAGC	1 cut(s)	859
LweI	GCATC	1 cut(s)	884
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	3 cut(s)	678, 954, 998
MalI	GATC	3 cut(s)	273, 917, 979
MboI	GATC	3 cut(s)	271, 915, 977
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	315, 646
MlyI	GAGTC	2 cut(s)	14, 308
MmeI	TCCRAC	2 cut(s)	709, 729
Mph1103I	ATGCAT	2 cut(s)	439, 786
MroI	TCCGGA	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	3 cut(s)	159, 432, 807
MslI	CAYNNNNRTG	1 cut(s)	668
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	227, 257
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	3 cut(s)	271, 915, 977
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	459
NmeAIII	GCCGAG	1 cut(s)	700
NmuCI	GTSAC	1 cut(s)	954
NsiI	ATGCAT	2 cut(s)	439, 786
PaeR7I	CTCGAG	1 cut(s)	973
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	1 cut(s)	752
PkrI	GCNGC	2 cut(s)	262, 874
PleI	GAGTC	2 cut(s)	13, 307
PpsI	GAGTC	2 cut(s)	13, 307
PpuMI	RGGWCCY	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	19, 457
PspPPI	RGGWCCY	1 cut(s)	457
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PsuI	RGATCY	1 cut(s)	977
RsaI	GTAC	5 cut(s)	338, 361, 384, 401, 791
RsaNI	GTAC	5 cut(s)	337, 360, 383, 400, 790
RseI	CAYNNNNRTG	1 cut(s)	668
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	159, 432, 807
SatI	GCNGC	2 cut(s)	261, 873
Sau3AI	GATC	3 cut(s)	271, 915, 977
Sau96I	GGNCC	2 cut(s)	19, 457
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	2 cut(s)	14, 308
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	884
SfcI	CTRYAG	1 cut(s)	387
Sfr274I	CTCGAG	1 cut(s)	973
SinI	GGWCC	2 cut(s)	19, 457
SlaI	CTCGAG	1 cut(s)	973
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	403, 973
SmoI	CTYRAG	2 cut(s)	403, 973
SpeI	ACTAGT	1 cut(s)	682
Sse9I	AATT	2 cut(s)	315, 646
SsiI	CCGC	2 cut(s)	228, 261
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	3 cut(s)	466, 547, 628
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	3 cut(s)	918, 974, 1037
TasI	AATT	2 cut(s)	315, 646
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	3 cut(s)	159, 432, 807
Tru9I	TTAA	3 cut(s)	159, 432, 807
TscAI	CASTG	4 cut(s)	214, 469, 631, 966
TseFI	GTSAC	1 cut(s)	954
TseI	GCWGC	1 cut(s)	872
Tsp45I	GTSAC	1 cut(s)	954
TspDTI	ATGAA	4 cut(s)	355, 409, 845, 870
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	4 cut(s)	214, 469, 631, 966
VpaK11BI	GGWCC	2 cut(s)	19, 457
XapI	RAATTY	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	973
XmnI	GAANNNNTTC	1 cut(s)	695
XspI	CTAG	1 cut(s)	683
ZrmI	AGTACT	1 cut(s)	401
Zsp2I	ATGCAT	2 cut(s)	439, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.