Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

16305583 .. 16308012

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGTTCATCCTTTACCTTCTTGGCCTTATCTTCTCTCTGTCCATCTCCCTCTCACTCCTCTCCAATGGAGTCCCTCTCCATGATCCTCTCCTTTTCTCCACCACCCCAAAACCACCTCAAAGCCCAGAAACCGTCCACCTCTCCACCAACCTCTCTTCCCCAAACCACCACCATTCCCGCCATTTCCACTTCCCTGCTACCCAATTCTTCCCAATCCCAATTTCCCTCCACCAAAAACACTCCTCACACCCCAATTTTCCTTCTCAAACCCACTCATTTCCCTCACAGATTACCAAAAACCCAACTCAAATTCCTCCTCACCGAGCTCATTGCAACCGCCCCATTTGCCCTTCCTTCTTTCGCTTCCGAATCCACAGCCTCCGTACCGGAGCAAGTTTCCGACAAAATAAACCTGGAATCAATCCTGGTCTCCATCGATGACTTTTTCAATCGGAACCCGTTTTTCGTTGCTGGGTGCACGTTCGTTTGGCTGGTTGTGATTCCTCTGGTTCAGGCTTATTTGAGAAAGTACAAGTTTGTCCTCGTCATTGACGCGTTTCGGAAGCTCCGGGACGACCCGAATGCTCAGCTGTTGGATATTCGAGACGAGAAGAGCTTGGGGTACCTGAAGTCTCCGAATTTGAAGATTTTGAACAAGGGTACTGTGCAGGTTCCGTTTTCGGAGGATGACGAAGCTGGGTTTGTGAGAAGGGTTTTGGAGAGGTTTGCGAACCCAGCAGAGACTGTGCTTTGTATTCTGGGCAATTTTGATGGAATTTCCATCAAAGTGGCTGAGTTACTGTTCAAGAATGGTTTCAAAGAGGCTTATGCAATCAAGGGTGGGGTTGGAGGTACAAAAGGGTGGCTGGAATCACAAGAAACTCTTTTGCCACCTTCTATGCATATCTACCCCAAGAAGAAGGTTAAAACTTCACAAGAAACTGTGACAAACGGAGTTGTTCGGGAAAAGGAAGACAGCAATGGTGCTGTCACTTCTAGAAATTTGTCCACAGGAGAAAGTCAAACGACAGACAATGGACGCACAACCAAGTCTACAGACTCCGCATCACAAATGAAAAATGGCTCTAGATCATCCTCTCCCTACCCAAGCTATCCAGATTTGAAACCGCCATCCTCCCCAACTCCATCGAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

42.22

Weight (kDa)

9.23

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
Acc65I	GGTACC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	1055
AccII	CGCG	1 cut(s)	557
AciI	CCGC	4 cut(s)	180, 339, 1065, 1130
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	4 cut(s)	311, 640, 777, 1003
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	5 cut(s)	387, 533, 626, 664, 856
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	6 cut(s)	451, 646, 655, 808, 820, 1126
AjnI	CCWGG	2 cut(s)	414, 426
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	6 cut(s)	328, 568, 592, 618, 698, 1113
AluI	AGCT	6 cut(s)	328, 568, 592, 618, 698, 1113
Alw21I	GWGCWC	2 cut(s)	330, 482
Alw26I	GTCTC	4 cut(s)	436, 600, 639, 737
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	478
ApoI	RAATTY	4 cut(s)	311, 640, 777, 1003
Asp700I	GAANNNNTTC	1 cut(s)	815
Asp718I	GGTACC	1 cut(s)	624
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	981
Bbv12I	GWGCWC	2 cut(s)	330, 482
BccI	CCATC	6 cut(s)	52, 443, 767, 791, 1141, 1156
BcgI	CGANNNNNNTGC	4 cut(s)	314, 348, 566, 600
BciT130I	CCWGG	2 cut(s)	416, 428
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	4 cut(s)	436, 600, 639, 737
BfaI	CTAG	2 cut(s)	999, 1089
BfmI	CTRYAG	1 cut(s)	1056
BfuAI	ACCTGC	1 cut(s)	661
BlpI	GCTNAGC	1 cut(s)	588
Bme1390I	CCNGG	3 cut(s)	416, 428, 572
BmiI	GGNNCC	3 cut(s)	458, 626, 675
BmrFI	CCNGG	3 cut(s)	416, 428, 572
BmsI	GCATC	1 cut(s)	1076
BpiI	GAAGAC	1 cut(s)	981
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuMI	CCSGG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	388
Bse3DI	GCAATG	2 cut(s)	330, 988
BseBI	CCWGG	2 cut(s)	416, 428
BseCI	ATCGAT	1 cut(s)	438
BseGI	GGATG	4 cut(s)	8, 694, 1094, 1133
BseMI	GCAATG	2 cut(s)	330, 988
BseMII	CTCAG	2 cut(s)	602, 786
BseRI	GAGGAG	3 cut(s)	49, 234, 308
BseSI	GKGCMC	1 cut(s)	482
BseYI	CCCAGC	3 cut(s)	473, 698, 736
BsgI	GTGCAG	1 cut(s)	689
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	624
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	2 cut(s)	330, 482
BsiSI	CCGG	2 cut(s)	389, 571
BslFI	GGGAC	2 cut(s)	58, 587
BsmAI	GTCTC	4 cut(s)	436, 600, 639, 737
BsmBI	CGTCTC	1 cut(s)	600
BsmFI	GGGAC	2 cut(s)	58, 587
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	330, 482
Bsp143I	GATC	2 cut(s)	84, 1091
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	4 cut(s)	180, 339, 1065, 1130
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	601, 787
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	3 cut(s)	458, 626, 675
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	608
BspT107I	GGYRCC	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	330, 988
BssMI	GATC	2 cut(s)	84, 1091
Bst2UI	CCWGG	2 cut(s)	416, 428
Bst4CI	ACNGT	5 cut(s)	135, 667, 748, 804, 946
Bst6I	CTCTTC	2 cut(s)	162, 608
BstDEI	CTNAG	2 cut(s)	588, 795
BstF5I	GGATG	4 cut(s)	8, 694, 1094, 1133
BstFNI	CGCG	1 cut(s)	557
BstKTI	GATC	2 cut(s)	87, 1094
BstMAI	GTCTC	4 cut(s)	436, 600, 639, 737
BstMBI	GATC	2 cut(s)	84, 1091
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 737
BstNI	CCWGG	2 cut(s)	416, 428
BstSCI	CCNGG	3 cut(s)	414, 426, 570
BstSFI	CTRYAG	1 cut(s)	1056
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	557
BstV2I	GAAGAC	1 cut(s)	981
BstXI	CCANNNNNNTGG	1 cut(s)	790
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	26
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	8, 694, 1094, 1133
BveI	ACCTGC	1 cut(s)	661
CaiI	CAGNNNCTG	1 cut(s)	746
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	2 cut(s)	563, 1050
Csp6I	GTAC	5 cut(s)	386, 532, 625, 663, 855
CviAII	CATG	1 cut(s)	82
CviQI	GTAC	5 cut(s)	386, 532, 625, 663, 855
DdeI	CTNAG	2 cut(s)	588, 795
DpnI	GATC	2 cut(s)	86, 1093
DpnII	GATC	2 cut(s)	84, 1091
Eam1104I	CTCTTC	2 cut(s)	162, 608
EarI	CTCTTC	2 cut(s)	162, 608
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	414, 426
EcoT22I	ATGCAT	1 cut(s)	906
EcoT38I	GRGCYC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	1 cut(s)	85
FaiI	YATR	4 cut(s)	83, 831, 902, 906
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FaqI	GGGAC	2 cut(s)	58, 587
FatI	CATG	1 cut(s)	81
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	1055
FokI	GGATG	3 cut(s)	701, 1081, 1120
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	999, 1089
GsaI	CCCAGC	3 cut(s)	477, 702, 740
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	2 cut(s)	389, 571
HgaI	GACGC	2 cut(s)	563, 1050
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	6 cut(s)	71, 371, 419, 502, 872, 1061
HpaII	CCGG	2 cut(s)	389, 571
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	4 cut(s)	138, 480, 1011, 1056
Hpy188I	TCNGA	6 cut(s)	370, 403, 456, 564, 639, 685
Hpy188III	TCNNGA	6 cut(s)	605, 808, 965, 999, 1089, 1118
Hpy8I	GTNNAC	4 cut(s)	138, 480, 1011, 1056
HpyAV	CCTTC	7 cut(s)	28, 272, 362, 366, 705, 906, 916
HpyCH4III	ACNGT	5 cut(s)	135, 667, 748, 804, 946
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	5 cut(s)	335, 480, 670, 833, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 737
HpyF3I	CTNAG	2 cut(s)	588, 795
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	84, 1091
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	2 cut(s)	391, 573
LweI	GCATC	1 cut(s)	1076
MaeI	CTAG	2 cut(s)	999, 1089
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	798, 946, 991
MalI	GATC	2 cut(s)	86, 1093
MboI	GATC	2 cut(s)	84, 1091
MboII	GAAGA	7 cut(s)	24, 149, 201, 625, 658, 931, 986
MhlI	GDGCHC	2 cut(s)	330, 482
MluCI	AATT	8 cut(s)	205, 221, 255, 311, 640, 766, 777, 1003
MluI	ACGCGT	1 cut(s)	555
MlyI	GAGTC	2 cut(s)	80, 1055
MmeI	TCCRAC	3 cut(s)	426, 576, 829
Mph1103I	ATGCAT	1 cut(s)	906
MroXI	GAANNNNTTC	1 cut(s)	815
MseI	TTAA	1 cut(s)	927
MslI	CAYNNNNRTG	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	2 cut(s)	389, 571
MspR9I	CCNGG	3 cut(s)	416, 428, 572
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	416, 428
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	347, 737
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	84, 1091
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	458, 626, 675
NmuCI	GTSAC	2 cut(s)	946, 991
NsiI	ATGCAT	1 cut(s)	906
PciSI	GCTCTTC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	4 cut(s)	371, 419, 502, 872
PfoI	TCCNGGA	1 cut(s)	570
PleI	GAGTC	2 cut(s)	79, 1055
PpsI	GAGTC	2 cut(s)	79, 1055
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	414, 426
PspFI	CCCAGC	3 cut(s)	473, 698, 736
PspGI	CCWGG	2 cut(s)	414, 426
PspN4I	GGNNCC	3 cut(s)	458, 626, 675
PstNI	CAGNNNCTG	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	5 cut(s)	387, 533, 626, 664, 856
RsaNI	GTAC	5 cut(s)	386, 532, 625, 663, 855
RseI	CAYNNNNRTG	1 cut(s)	788
SacI	GAGCTC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	927
Sau3AI	GATC	2 cut(s)	84, 1091
SchI	GAGTC	2 cut(s)	80, 1055
ScrFI	CCNGG	3 cut(s)	416, 428, 572
SduI	GDGCHC	2 cut(s)	330, 482
SfaNI	GCATC	1 cut(s)	1076
SfcI	CTRYAG	1 cut(s)	1056
SmiMI	CAYNNNNRTG	1 cut(s)	788
Sse9I	AATT	8 cut(s)	205, 221, 255, 311, 640, 766, 777, 1003
SsiI	CCGC	4 cut(s)	180, 339, 1065, 1130
SspMI	CTAG	2 cut(s)	999, 1089
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	414, 426, 570
TaaI	ACNGT	5 cut(s)	135, 667, 748, 804, 946
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	438, 604, 1151
TasI	AATT	8 cut(s)	205, 221, 255, 311, 640, 766, 777, 1003
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	4 cut(s)	371, 419, 502, 872
Tru1I	TTAA	1 cut(s)	927
Tru9I	TTAA	1 cut(s)	927
TseFI	GTSAC	2 cut(s)	946, 991
Tsp45I	GTSAC	2 cut(s)	946, 991
TspDTI	ATGAA	1 cut(s)	1091
TspGWI	ACGGA	3 cut(s)	373, 666, 969
VneI	GTGCAC	1 cut(s)	478
XapI	RAATTY	4 cut(s)	311, 640, 777, 1003
XbaI	TCTAGA	2 cut(s)	998, 1088
XmiI	GTMKAC	1 cut(s)	1055
XmnI	GAANNNNTTC	1 cut(s)	815
XspI	CTAG	2 cut(s)	999, 1089
Zsp2I	ATGCAT	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.