Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

43430912 .. 43433818

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG261500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGTAGTTTTTACAGTACCATCCATACCCGACCATTCAATGACCATCGTTCGCCTTCTTGGCCTTATCCTCTCTCCCTTTCTCCCTCTCTCACTTTCCTGTACTCTCCCATGGAGTCTCTTTCCATGGTCGTCTCCTGTTCTTCTCCACCACTCCAAACCCACCTCAAAACCCAGAAGCCACTCACTTCATTACCAATCTATCTTCCCAAAACCTCCATTCTTACCTCCCAATCATTCAACTCCCACCACCCTCATTTTCCCTCCATTAAAAACCTCTTTCACAACAAACCCAAAACCCATCTCTCCTTTCTCCTCACTGAGCTCATCGCAACCACCGCCATTACTCTCCCTTCTTTTGCTTCCGAAGCCGCAGTTTCCGATCAAGTTTCAGACAAAATAAACTTGGAGTCAATCCTGGTCTCAATTGACGAGTTTTTCAACAAGTACCCATATTTCGTTGCTGGTTGTACGTTCATTTGGTTGGTTGGTGTACCCATAGTTCAAGAGTACTTGAGAAAATATAAGTTCATCTCTGTTCTTAATGCATTCCGGAAACTCAAAGAGGACCCCACTGTTCAGCTATTGGATATTAGGGACGACAAGAGTTTGAAGTATTTGAAGTCTCCCAACTTGAAGATTGTGAATAAGGATACTGTGCAGGTTCAGTTTTCCGAGGATGATGCAGATGGGTTTGTAAAGAAGGTTTTGCAGAAGTTCGGAGACCCAGCAAACACTGTTGTCTGTGTTTTGGGAAATTTTGATGATGTTTCCATCAAAGTGGCCGAGTTACTAGTGAAGAATGGTTTCAAAGAGACTTACGCAATCAAGGGAGGGGTTGGAGGCACGAAAGGGTGGTTGGTAAGTTACTTTCGAAATCTTGTCCTTGCTACATTTTCAGTGTTGTCTGCGATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.27

Weight (kDa)

9.03

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AccIII	TCCGGA	1 cut(s)	552
AciI	CCGC	2 cut(s)	339, 372
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	1 cut(s)	757
AfaI	GTAC	6 cut(s)	19, 104, 449, 472, 495, 512
AgsI	TTSAA	8 cut(s)	40, 241, 442, 506, 613, 622, 637, 811
AhlI	ACTAGT	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	2 cut(s)	325, 583
AluI	AGCT	2 cut(s)	325, 583
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	6 cut(s)	123, 139, 427, 630, 717, 809
Aor13HI	TCCGGA	1 cut(s)	552
AoxI	GGCC	2 cut(s)	62, 783
ApoI	RAATTY	1 cut(s)	757
Asp700I	GAANNNNTTC	1 cut(s)	806
AspS9I	GGNCC	1 cut(s)	568
AsuII	TTCGAA	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	5 cut(s)	29, 54, 309, 683, 782
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	646
BcoDI	GTCTC	6 cut(s)	123, 139, 427, 630, 717, 809
BcuI	ACTAGT	1 cut(s)	793
BfaI	CTAG	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	646
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	1 cut(s)	673
Bpu14I	TTCGAA	1 cut(s)	874
BpuEI	CTTGAG	1 cut(s)	535
BsaI	GGTCTC	2 cut(s)	427, 717
BsaJI	CCNNGG	3 cut(s)	111, 126, 675
BsaWI	WCCGGW	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	3 cut(s)	111, 126, 675
BseGI	GGATG	2 cut(s)	21, 685
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	727
BsgI	GTGCAG	1 cut(s)	680
BshFI	GGCC	2 cut(s)	64, 785
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	611
BsmAI	GTCTC	6 cut(s)	123, 139, 427, 630, 717, 809
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	64, 785
Bso31I	GGTCTC	2 cut(s)	427, 717
Bsp119I	TTCGAA	1 cut(s)	874
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp13I	TCCGGA	1 cut(s)	552
Bsp143I	GATC	1 cut(s)	382
Bsp19I	CCATGG	2 cut(s)	111, 126
BspACI	CCGC	2 cut(s)	339, 372
BspANI	GGCC	2 cut(s)	64, 785
BspCNI	CTCAG	1 cut(s)	313
BspEI	TCCGGA	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	570
BspMI	ACCTGC	1 cut(s)	652
BspT104I	TTCGAA	1 cut(s)	874
BspTNI	GGTCTC	2 cut(s)	427, 717
BssECI	CCNNGG	3 cut(s)	111, 126, 675
BssMI	GATC	1 cut(s)	382
BssT1I	CCWWGG	2 cut(s)	111, 126
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	4 cut(s)	17, 577, 658, 739
BstBI	TTCGAA	1 cut(s)	874
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	2 cut(s)	111, 126
BstF5I	GGATG	2 cut(s)	21, 685
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	6 cut(s)	123, 139, 427, 630, 717, 809
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 338, 368
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	2 cut(s)	64, 785
BtgI	CCRYGG	2 cut(s)	111, 126
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	21, 685
BtsIMutI	CAGTG	4 cut(s)	318, 573, 735, 906
BveI	ACCTGC	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	6 cut(s)	18, 103, 448, 471, 494, 511
CviAII	CATG	2 cut(s)	112, 127
CviJI	RGCY	6 cut(s)	64, 181, 325, 371, 583, 785
CviKI_1	RGCY	6 cut(s)	64, 181, 325, 371, 583, 785
CviQI	GTAC	6 cut(s)	18, 103, 448, 471, 494, 511
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	111, 126
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	2 cut(s)	427, 717
Eco47I	GGWCC	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	111, 126
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	111, 126
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	2 cut(s)	115, 130
FaiI	YATR	7 cut(s)	27, 113, 128, 454, 500, 525, 919
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	2 cut(s)	111, 126
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	8, 692
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	794
GluI	GCNGC	1 cut(s)	372
GsaI	CCCAGC	1 cut(s)	731
HaeIII	GGCC	2 cut(s)	64, 785
HapII	CCGG	1 cut(s)	553
Hin1II	CATG	2 cut(s)	115, 130
HinfI	GANTC	2 cut(s)	116, 410
HpaII	CCGG	1 cut(s)	553
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	5 cut(s)	367, 382, 394, 676, 722
Hpy188III	TCNNGA	2 cut(s)	506, 553
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	3 cut(s)	66, 363, 697
HpyCH4III	ACNGT	4 cut(s)	17, 577, 658, 739
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	4 cut(s)	548, 661, 686, 712
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 338, 368
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	115, 130
Kpn2I	TCCGGA	1 cut(s)	552
Kzo9I	GATC	1 cut(s)	382
LpnPI	CCDG	9 cut(s)	113, 151, 188, 404, 431, 450, 566, 647, 741
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	789, 866
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	4 cut(s)	135, 197, 649, 811
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	426, 757
MlyI	GAGTC	2 cut(s)	125, 419
MmeI	TCCRAC	1 cut(s)	820
Mph1103I	ATGCAT	1 cut(s)	550
MroI	TCCGGA	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	2 cut(s)	270, 543
MslI	CAYNNNNRTG	1 cut(s)	779
MspI	CCGG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	61, 338, 368
NcoI	CCATGG	2 cut(s)	111, 126
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	115, 130
NlaIV	GGNNCC	1 cut(s)	570
NmeAIII	GCCGAG	1 cut(s)	811
NsiI	ATGCAT	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	874
PctI	GAATGC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	806
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	2 cut(s)	124, 418
PpsI	GAGTC	2 cut(s)	124, 418
PpuMI	RGGWCCY	1 cut(s)	568
Psp124BI	GAGCTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	568
PspPPI	RGGWCCY	1 cut(s)	568
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
RsaI	GTAC	6 cut(s)	19, 104, 449, 472, 495, 512
RsaNI	GTAC	6 cut(s)	18, 103, 448, 471, 494, 511
RseI	CAYNNNNRTG	1 cut(s)	779
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	270, 543
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	568
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	2 cut(s)	125, 419
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	168, 218, 230, 279, 327, 476, 585, 666, 708
SfaNI	GCATC	1 cut(s)	673
SfuI	TTCGAA	1 cut(s)	874
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
SpeI	ACTAGT	1 cut(s)	793
Sse9I	AATT	2 cut(s)	426, 757
SsiI	CCGC	2 cut(s)	339, 372
SspMI	CTAG	1 cut(s)	794
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	2 cut(s)	111, 126
TaaI	ACNGT	4 cut(s)	17, 577, 658, 739
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	874
TasI	AATT	2 cut(s)	426, 757
TatI	WGTACW	2 cut(s)	102, 510
TauI	GCSGC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	270, 543
Tru9I	TTAA	2 cut(s)	270, 543
TscAI	CASTG	4 cut(s)	325, 580, 742, 906
TspDTI	ATGAA	3 cut(s)	180, 466, 520
TspRI	CASTG	4 cut(s)	325, 580, 742, 906
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	1 cut(s)	794
ZrmI	AGTACT	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.