Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010114

Physical Location & Seq

Genomic Coordinates Forward (+)

44268648 .. 44272364

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAGTCTCTTTCCATGGTCCTCTCCTGTTCTTCTCCACCACTCCAAACCCACCTCAAAACCCAGAAACCACTCACTTCACTACCAATCTCTCTTCCCAAAACCTCCATTCTTACCTCCCAATCATTCAACTCCCACCACCCTCATTTTCCCTCCCTTAAAAACCTCTTTCACAACAAACCCAAAACCCATCTCTCCTTTCTCCTCACTGAGCTCATCGCAACCACCGCCATTACTCTCCCTTCTTTTGCTTCCGAAGCCGCAGTTTCCGATCAAGTTTCAGACAAAATAAACTTGGAGTCAATCCTGGTCTCAATTGATGAGTTTTTCAGCAAGTACCCATATTTCGTTGCCGGTTGTACGTTCATTTGGTTGGTTGGTGTACCCATAGTTCAAGAGTACTTGAGAAAATATAAGTTCATCTCTGTTCTTAATGCATTCCGGAAACTCAAAGAGGACCCCACTGTTCAGCTATTGGATATTAGGGACGACAAGAGTTTGAAGTATTTGAAGTCTCCCAACTTGAAGATTGTGAATAAGGATACTGTGCAGGTTCAGTTTTCCGAGGATGATGCAGATGGGTTTGTAAAGAAGGTTTTGCAGAAGTTCGGAGACCCAGCGAACACTGTTGTCTGTGTTTTGGGAAATTTTGATGATGTTTCCATCAAAGTGGCCGAGTTACTAGTGAAGAATGGTTTCAAAGAGACTTATGCAATCAAGGGAGGGGTTGGAGGCACGAAAGGGTGGTTGGAATCACAGGAAACTCTTTTGCCACCTTCTATGCATATGTACCCCAAGAAGAAGGTTAAAACTGCAAAAGAAACTGGGATGAATGGTGGAGTTGTTCAGCAAAATGAAGATGGCAATAATGCTGCATCTTCTTCCGGAAATGTTCCCGTAGCAGAAAAGCAAAGGATCAACAACGGACACATAAGCAAGTCCACGAAGGCTGTGTCACCAGTGAAAGATGGCTTGAGATCCTCTTCTCCCTACCCAAATCCTTTGGCTTGGGATGAGATTGAAAAAGACTTACCTGCATGCTCATCAAAGGTGTTGCTGGAATCGAAATGGACATTCATTACTCAGGAGGAGCATCCGCACTTGAATAGGCCATGGTACAAGCTGCATCCATGTGGGACTAGTGAGTGGATGAAGCTGCTTTTTCTTGGTGATGAATCCCTGGCTACGAATGGAGTAGCGGTTGAGCAATATTTGGTGTCATGGCTCTCAGTTGTTGGTCAAGTAGTTGGTCTTAGAATCCCTTTTGACATGTTGAATCACCATAAAAGTTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0055035 GO:0071704 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

47.98

Weight (kDa)

8.52

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	333 - 421	2e-22	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25480
fragaria_vesca	FvH4_2g17470
malus_domestica	MD05G1153600.v1.1 MD10G1147900.v1.1
prunus_persica	Prupe.8G187000_v2.0.a1
pyrus_communis	pycom05g14800 pycom10g12800
rosa_chinensis	RchiOBHm_Chr3g0456441 RchiOBHm_Chr6g0282201 RchiOBHm_Chr6g0284601
rosa_laevigata	RLG00000012902 RLG00000025305
rosa_multiflora	Rmu_sc0011940.1_g000009 Rmu_sc0014549.1_g000007
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259300 Rh6BG262600 Rh6CG261500 Rh6DG253600
rosa_wichuraiana	Rw3G006290 Rw6G022430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	541, 1042
AccIII	TCCGGA	2 cut(s)	441, 884
AciI	CCGC	4 cut(s)	228, 261, 1097, 1199
AclWI	GGATC	2 cut(s)	923, 972
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	646
AfaI	GTAC	6 cut(s)	338, 361, 384, 401, 791, 1118
AflIII	ACRYGT	1 cut(s)	1269
AgsI	TTSAA	9 cut(s)	130, 395, 502, 511, 526, 700, 1022, 1105, 1276
AhlI	ACTAGT	2 cut(s)	682, 1139
AjnI	CCWGG	2 cut(s)	306, 1179
AjuI	GAANNNNNNNTTGG	2 cut(s)	731, 763
AluBI	AGCT	4 cut(s)	214, 472, 1123, 1156
AluI	AGCT	4 cut(s)	214, 472, 1123, 1156
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	5 cut(s)	12, 316, 519, 606, 698
AlwI	GGATC	2 cut(s)	923, 972
Aor13HI	TCCGGA	2 cut(s)	441, 884
AoxI	GGCC	2 cut(s)	672, 1109
ApeKI	GCWGC	3 cut(s)	872, 1123, 1156
ApoI	RAATTY	1 cut(s)	646
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
Asp700I	GAANNNNTTC	1 cut(s)	695
AspS9I	GGNCC	2 cut(s)	19, 457
AsuHPI	GGTGA	3 cut(s)	948, 1181, 1271
AvaII	GGWCC	2 cut(s)	19, 457
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	859, 1110, 1143
BccI	CCATC	5 cut(s)	198, 572, 671, 854, 962
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	2 cut(s)	308, 1181
BciVI	GTATCC	1 cut(s)	535
BcoDI	GTCTC	5 cut(s)	12, 316, 519, 606, 698
BcuI	ACTAGT	2 cut(s)	682, 1139
BfaI	CTAG	2 cut(s)	683, 1140
BfuAI	ACCTGC	2 cut(s)	541, 1042
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	4 cut(s)	261, 873, 1124, 1157
BlsI	GCNGC	4 cut(s)	262, 874, 1125, 1158
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	308, 1181
Bme18I	GGWCC	2 cut(s)	19, 457
BmgT120I	GGNCC	2 cut(s)	19, 457
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	308, 1181
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	4 cut(s)	562, 884, 1102, 1135
BmuI	ACTGGG	1 cut(s)	834
BpuEI	CTTGAG	2 cut(s)	424, 994
BsaI	GGTCTC	2 cut(s)	316, 606
BsaJI	CCNNGG	4 cut(s)	15, 564, 1112, 1179
BsaWI	WCCGGW	2 cut(s)	441, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	1185, 1215
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	829, 959
BseAI	TCCGGA	2 cut(s)	441, 884
BseBI	CCWGG	2 cut(s)	308, 1181
BseDI	CCNNGG	4 cut(s)	15, 564, 1112, 1179
BseGI	GGATG	6 cut(s)	574, 834, 1018, 1093, 1126, 1155
BseMII	CTCAG	3 cut(s)	201, 1097, 1242
BseNI	ACTGG	2 cut(s)	829, 959
BseRI	GAGGAG	2 cut(s)	194, 1103
BseXI	GCAGC	3 cut(s)	859, 1110, 1143
BseYI	CCCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	2 cut(s)	674, 1111
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	354, 442, 885
BslFI	GGGAC	2 cut(s)	500, 1150
BsmAI	GTCTC	5 cut(s)	12, 316, 519, 606, 698
BsmFI	GGGAC	2 cut(s)	500, 1150
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	674, 1111
Bso31I	GGTCTC	2 cut(s)	316, 606
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp13I	TCCGGA	2 cut(s)	441, 884
Bsp143I	GATC	3 cut(s)	271, 915, 977
Bsp19I	CCATGG	2 cut(s)	15, 1112
BspACI	CCGC	4 cut(s)	228, 261, 1097, 1199
BspANI	GGCC	2 cut(s)	674, 1111
BspCNI	CTCAG	3 cut(s)	202, 1096, 1241
BspEI	TCCGGA	2 cut(s)	441, 884
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	2 cut(s)	541, 1042
BspPI	GGATC	2 cut(s)	923, 972
BspTNI	GGTCTC	2 cut(s)	316, 606
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	829, 959
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	4 cut(s)	15, 564, 1112, 1179
BssMI	GATC	3 cut(s)	271, 915, 977
BssT1I	CCWWGG	2 cut(s)	15, 1112
Bst2UI	CCWGG	2 cut(s)	308, 1181
Bst4CI	ACNGT	3 cut(s)	466, 547, 628
Bst6I	CTCTTC	2 cut(s)	99, 988
BstC8I	GCNNGC	1 cut(s)	1039
BstDEI	CTNAG	4 cut(s)	210, 1083, 1228, 1253
BstDSI	CCRYGG	2 cut(s)	15, 1112
BstF5I	GGATG	6 cut(s)	574, 834, 1018, 1093, 1126, 1155
BstKTI	GATC	3 cut(s)	274, 918, 980
BstMAI	GTCTC	5 cut(s)	12, 316, 519, 606, 698
BstMBI	GATC	3 cut(s)	271, 915, 977
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 257
BstNI	CCWGG	2 cut(s)	308, 1181
BstNSI	RCATGY	2 cut(s)	1041, 1273
BstSCI	CCNGG	2 cut(s)	306, 1179
BstV1I	GCAGC	3 cut(s)	859, 1110, 1143
BstX2I	RGATCY	1 cut(s)	977
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	977
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	674, 1111
BtgI	CCRYGG	2 cut(s)	15, 1112
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	6 cut(s)	574, 834, 1018, 1093, 1126, 1155
BtsIMutI	CAGTG	4 cut(s)	207, 462, 624, 966
BveI	ACCTGC	2 cut(s)	541, 1042
Cac8I	GCNNGC	1 cut(s)	1039
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	19, 457
Csp6I	GTAC	6 cut(s)	337, 360, 383, 400, 790, 1117
CviAII	CATG	6 cut(s)	16, 1038, 1113, 1131, 1221, 1270
CviQI	GTAC	6 cut(s)	337, 360, 383, 400, 790, 1117
DdeI	CTNAG	4 cut(s)	210, 1083, 1228, 1253
DpnI	GATC	3 cut(s)	273, 917, 979
DpnII	GATC	3 cut(s)	271, 915, 977
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	2 cut(s)	99, 988
EarI	CTCTTC	2 cut(s)	99, 988
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	15, 1112
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	316, 606
Eco47I	GGWCC	2 cut(s)	19, 457
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	306, 1179
EcoT14I	CCWWGG	2 cut(s)	15, 1112
EcoT22I	ATGCAT	2 cut(s)	439, 786
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	15, 1112
FaeI	CATG	6 cut(s)	19, 1041, 1116, 1134, 1224, 1273
FaqI	GGGAC	2 cut(s)	500, 1150
FatI	CATG	6 cut(s)	15, 1037, 1112, 1130, 1220, 1269
FauNDI	CATATG	1 cut(s)	786
Fnu4HI	GCNGC	4 cut(s)	261, 873, 1124, 1157
FokI	GGATG	6 cut(s)	581, 841, 1025, 1080, 1113, 1162
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	261, 873, 1124, 1157
FspBI	CTAG	2 cut(s)	683, 1140
GluI	GCNGC	4 cut(s)	261, 873, 1124, 1157
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	2 cut(s)	674, 1111
HapII	CCGG	3 cut(s)	354, 442, 885
Hin1II	CATG	6 cut(s)	19, 1041, 1116, 1134, 1224, 1273
HinfI	GANTC	7 cut(s)	5, 299, 752, 1061, 1175, 1257, 1276
HpaII	CCGG	3 cut(s)	354, 442, 885
HphI	GGTGA	3 cut(s)	948, 1181, 1271
Hpy166II	GTNNAC	2 cut(s)	383, 942
Hpy188I	TCNGA	5 cut(s)	256, 271, 283, 565, 611
Hpy188III	TCNNGA	4 cut(s)	395, 442, 885, 1085
Hpy8I	GTNNAC	2 cut(s)	383, 942
HpyAV	CCTTC	5 cut(s)	252, 586, 786, 796, 940
HpyCH4III	ACNGT	3 cut(s)	466, 547, 628
HpyCH4IV	ACGT	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 257
HpyF3I	CTNAG	4 cut(s)	210, 1083, 1228, 1253
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	6 cut(s)	19, 1041, 1116, 1134, 1224, 1273
Kpn2I	TCCGGA	2 cut(s)	441, 884
Kzo9I	GATC	3 cut(s)	271, 915, 977
LmnI	GCTCC	1 cut(s)	1090
Lsp1109I	GCAGC	3 cut(s)	859, 1110, 1143
LweI	GCATC	4 cut(s)	562, 884, 1102, 1135
MaeI	CTAG	2 cut(s)	683, 1140
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	678, 954
MalI	GATC	3 cut(s)	273, 917, 979
MboI	GATC	3 cut(s)	271, 915, 977
MboII	GAAGA	9 cut(s)	24, 86, 538, 700, 811, 869, 870, 873, 975
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	3 cut(s)	315, 646, 1294
MlyI	GAGTC	2 cut(s)	14, 308
MmeI	TCCRAC	2 cut(s)	709, 729
Mph1103I	ATGCAT	2 cut(s)	439, 786
MroI	TCCGGA	2 cut(s)	441, 884
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	3 cut(s)	159, 432, 807
MslI	CAYNNNNRTG	2 cut(s)	668, 1131
MspI	CCGG	3 cut(s)	354, 442, 885
MspR9I	CCNGG	2 cut(s)	308, 1181
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	308, 1181
MwoI	GCNNNNNNNGC	2 cut(s)	227, 257
NcoI	CCATGG	2 cut(s)	15, 1112
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	3 cut(s)	271, 915, 977
NlaIII	CATG	6 cut(s)	19, 1041, 1116, 1134, 1224, 1273
NlaIV	GGNNCC	1 cut(s)	459
NmeAIII	GCCGAG	1 cut(s)	700
NmuCI	GTSAC	1 cut(s)	954
NsiI	ATGCAT	2 cut(s)	439, 786
NspI	RCATGY	2 cut(s)	1041, 1273
PaeI	GCATGC	1 cut(s)	1041
PciI	ACATGT	1 cut(s)	1269
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	5 cut(s)	752, 1061, 1175, 1257, 1276
PkrI	GCNGC	4 cut(s)	262, 874, 1125, 1158
PleI	GAGTC	2 cut(s)	13, 307
PpsI	GAGTC	2 cut(s)	13, 307
PpuMI	RGGWCCY	1 cut(s)	457
PscI	ACATGT	1 cut(s)	1269
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	2 cut(s)	306, 1179
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	2 cut(s)	306, 1179
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	19, 457
PspPPI	RGGWCCY	1 cut(s)	457
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PsuI	RGATCY	1 cut(s)	977
RsaI	GTAC	6 cut(s)	338, 361, 384, 401, 791, 1118
RsaNI	GTAC	6 cut(s)	337, 360, 383, 400, 790, 1117
RseI	CAYNNNNRTG	2 cut(s)	668, 1131
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	159, 432, 807
SatI	GCNGC	4 cut(s)	261, 873, 1124, 1157
Sau3AI	GATC	3 cut(s)	271, 915, 977
Sau96I	GGNCC	2 cut(s)	19, 457
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	2 cut(s)	14, 308
ScrFI	CCNGG	2 cut(s)	308, 1181
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	4 cut(s)	562, 884, 1102, 1135
SinI	GGWCC	2 cut(s)	19, 457
SmiMI	CAYNNNNRTG	2 cut(s)	668, 1131
SmlI	CTYRAG	2 cut(s)	403, 973
SmoI	CTYRAG	2 cut(s)	403, 973
SpeI	ACTAGT	2 cut(s)	682, 1139
SphI	GCATGC	1 cut(s)	1041
Sse9I	AATT	3 cut(s)	315, 646, 1294
SsiI	CCGC	4 cut(s)	228, 261, 1097, 1199
SspI	AATATT	1 cut(s)	1211
SspMI	CTAG	2 cut(s)	683, 1140
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	306, 1179
StyI	CCWWGG	2 cut(s)	15, 1112
TaaI	ACNGT	3 cut(s)	466, 547, 628
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	1064
TasI	AATT	3 cut(s)	315, 646, 1294
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	5 cut(s)	752, 1061, 1175, 1257, 1276
Tru1I	TTAA	3 cut(s)	159, 432, 807
Tru9I	TTAA	3 cut(s)	159, 432, 807
TscAI	CASTG	4 cut(s)	214, 469, 631, 966
TseFI	GTSAC	1 cut(s)	954
TseI	GCWGC	3 cut(s)	872, 1123, 1156
Tsp45I	GTSAC	1 cut(s)	954
TspDTI	ATGAA	7 cut(s)	355, 409, 845, 870, 1066, 1166, 1188
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	4 cut(s)	214, 469, 631, 966
VpaK11BI	GGWCC	2 cut(s)	19, 457
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	2 cut(s)	1041, 1273
XmnI	GAANNNNTTC	1 cut(s)	695
XspI	CTAG	2 cut(s)	683, 1140
ZrmI	AGTACT	1 cut(s)	401
Zsp2I	ATGCAT	2 cut(s)	439, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.