Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006504

Physical Location & Seq

Genomic Coordinates Reverse (-)

9287178 .. 9289338

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCGGTCTCTGCTACAGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATCTCATTCTTTGAGACTACTGACTTTCTTGATCCCCAAGGAAAGAGTCTTCGTTCTCTTACCAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAGTGCACAATTGTTTCCTCTCTCACAAACTCTTTCGTTGACTCTTACGTGCTCTCTGAATCTAGTCTCTTTGTTTATCCTTACAAGATCATCATCAAAACATGCGGGACTACTAAGCTTCTCTTGTCGATCCCGCATATCCTTAGGCTGGCTGATTCACTTTGCCTCACTGTCAAATCTGTTCGCTACACTCGTGGTAGCTTTATTTTTCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGATGACTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTGATGGGAGGTTCAGATAATAACCCTCAGAGATGGCATGTTTACTCTGCTTCTTCTACTGAAGAATCTGCGGTTTGCGATAAACCCGTGTACACATTGGAGATGTGTATGACTGGTCTAGACAATATAAAAGCTTCGGTGTTCTTTAAAACCAACTCTGTTTCAGCTTCTGAGATGACTATTAGCTCTGGGATCAGAAACATCCTTCCAGGCTCTGAAATCTGTGATTTTAACTTTGAACCGTGCGGTTACTCGATGAATTCGATTGAAGGGGATGCGGTTTCTACCATCCATGTGACCCCGGAAGATGGTTTTAGCTATGCAAGCTTTGAAACAGTTGGTTATGATCTAAAGGCTTTGAACTTTAAGGAGTTGGTGGATAGGGTTCTGGTTTGTTTTGGACCGGAAGAATTTTCTGTAGCGGTGCATGCTAATCTTGGAACCGAGGTATTGGCGTCTGATTGTGTAGCTGATGTGAACGGATACTTTAGCCAAGAGAGAGAACTAGAGGAGCTTGGACTTGGAGGTTCGGTTCTATACCAGAGATTTGTCAAGACTGTTGAATGTTGCTCACCAAAATCTACTCTTGGGTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

349

Amino Acids

38.29

Weight (kDa)

4.73

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_decarbox	PF01536	6 - 333	1.7e-115	Adenosylmethionine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25570 AT3G25570
fragaria_vesca	FvH4_4g28650 FvH4_6g10680
malus_domestica	MD13G1052600.v1.1 MD16G1057400.v1.1
prunus_persica	Prupe.1G299500_v2.0.a1
pyrus_communis	pycom13g04700 pycom16g05020
rosa_chinensis	RchiOBHm_Chr4g0420801 RchiOBHm_Chr4g0436761
rosa_laevigata	RLG00000006498 RLG00000007737
rosa_multiflora	Rmu_co8473325.1_g000001 Rmu_sc0001837.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377810
rosa_rugosa	Rorug04G0295900
rosa_samantha	Rh4AG350300 Rh4BG230500 Rh4BG359100 Rh4CG242500 Rh4CG373500 Rh4DG225900 Rh4DG353200
rosa_wichuraiana	Rw4G019680 Rw4G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 249, 278, 521, 696, 728, 872
AclWI	GGATC	3 cut(s)	74, 268, 650
AcsI	RAATTY	2 cut(s)	709, 860
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	905
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	292, 758
AgsI	TTSAA	5 cut(s)	689, 719, 782, 811, 1013
AjnI	CCWGG	1 cut(s)	658
AloI	GAACNNNNNNTCC	2 cut(s)	966, 998
Alw21I	GWGCWC	3 cut(s)	152, 198, 364
Alw26I	GTCTC	3 cut(s)	13, 56, 215
Alw44I	GTGCAC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	74, 268, 650
AlwNI	CAGNNNCTG	2 cut(s)	620, 665
ApaLI	GTGCAC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	709, 860
AspS9I	GGNCC	1 cut(s)	851
AsuC2I	CCSGG	2 cut(s)	357, 752
AsuHPI	GGTGA	2 cut(s)	368, 1014
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	3 cut(s)	152, 198, 364
BccI	CCATC	4 cut(s)	448, 477, 746, 752
BciT130I	CCWGG	1 cut(s)	660
BciVI	GTATCC	1 cut(s)	926
BcnI	CCSGG	2 cut(s)	357, 752
BcoDI	GTCTC	3 cut(s)	13, 56, 215
BfaI	CTAG	3 cut(s)	207, 569, 956
BfmI	CTRYAG	2 cut(s)	15, 867
BfuI	GTATCC	1 cut(s)	926
BglII	AGATCT	1 cut(s)	129
Bme1390I	CCNGG	3 cut(s)	357, 660, 752
Bme18I	GGWCC	1 cut(s)	851
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	1 cut(s)	892
BmrFI	CCNGG	3 cut(s)	357, 660, 752
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	715
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	357, 752
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	905
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	85, 750, 894
BsaWI	WCCGGW	1 cut(s)	853
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 758
Bse1I	ACTGG	2 cut(s)	118, 568
Bse21I	CCTNAGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	3 cut(s)	85, 750, 894
BseGI	GGATG	3 cut(s)	651, 730, 738
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	292, 758
BseMII	CTCAG	3 cut(s)	402, 491, 612
BseNI	ACTGG	2 cut(s)	118, 568
BseRI	GAGGAG	1 cut(s)	974
BseSI	GKGCMC	1 cut(s)	152
BsiHKAI	GWGCWC	3 cut(s)	152, 198, 364
BsiSI	CCGG	3 cut(s)	356, 752, 854
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	292, 758
BsmAI	GTCTC	3 cut(s)	13, 56, 215
BsmFI	GGGAC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	152, 198, 364
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
BspACI	CCGC	7 cut(s)	5, 249, 278, 521, 696, 728, 872
BspCNI	CTCAG	3 cut(s)	401, 490, 613
BspLI	GGNNCC	1 cut(s)	892
BspPI	GGATC	3 cut(s)	74, 268, 650
BspT104I	TTCGAA	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	118, 568
BssECI	CCNNGG	3 cut(s)	85, 750, 894
BssMI	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
BssNI	GRCGYC	1 cut(s)	905
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	5 cut(s)	316, 380, 693, 787, 1009
BstACI	GRCGYC	1 cut(s)	905
BstAUI	TGTACA	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	294, 775, 879
BstDEI	CTNAG	5 cut(s)	258, 287, 388, 477, 621
BstF5I	GGATG	3 cut(s)	651, 730, 738
BstKTI	GATC	6 cut(s)	82, 132, 234, 276, 645, 799
BstMAI	GTCTC	3 cut(s)	13, 56, 215
BstMBI	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 774, 878
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	3 cut(s)	249, 491, 881
BstSCI	CCNGG	3 cut(s)	355, 658, 750
BstSFI	CTRYAG	2 cut(s)	15, 867
BstSLI	GKGCMC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	926
BtsCI	GGATG	3 cut(s)	651, 730, 738
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	294, 775, 879
CaiI	CAGNNNCTG	2 cut(s)	620, 665
Cfr13I	GGNCC	1 cut(s)	851
CseI	GACGC	1 cut(s)	894
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	4 cut(s)	246, 488, 743, 878
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	5 cut(s)	258, 287, 388, 477, 621
DpnI	GATC	6 cut(s)	81, 131, 233, 275, 644, 798
DpnII	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
DraI	TTTAAA	1 cut(s)	598
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	531
Eco81I	CCTNAGG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	4 cut(s)	249, 491, 746, 881
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 430, 462
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	4 cut(s)	245, 487, 742, 877
FauI	CCCGC	2 cut(s)	242, 285
FokI	GGATG	3 cut(s)	638, 725, 737
FriOI	GRGCYC	1 cut(s)	364
FspBI	CTAG	3 cut(s)	207, 569, 956
GsuI	CTGGAG	1 cut(s)	123
HapII	CCGG	3 cut(s)	356, 752, 854
HgaI	GACGC	1 cut(s)	894
Hin1I	GRCGYC	1 cut(s)	905
Hin1II	CATG	4 cut(s)	249, 491, 746, 881
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	4 cut(s)	260, 444, 582, 775
HinfI	GANTC	6 cut(s)	94, 136, 185, 203, 299, 515
HpaII	CCGG	3 cut(s)	356, 752, 854
HphI	GGTGA	2 cut(s)	368, 1014
Hpy166II	GTNNAC	6 cut(s)	150, 184, 493, 541, 543, 928
Hpy188I	TCNGA	8 cut(s)	202, 391, 466, 480, 622, 647, 667, 910
Hpy188III	TCNNGA	4 cut(s)	77, 133, 569, 1003
Hpy8I	GTNNAC	6 cut(s)	150, 184, 493, 541, 543, 928
HpyAV	CCTTC	3 cut(s)	20, 665, 713
HpyCH4III	ACNGT	5 cut(s)	316, 380, 693, 787, 1009
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	150, 434, 773, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 774, 878
HpyF3I	CTNAG	5 cut(s)	258, 287, 388, 477, 621
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	905
Hsp92II	CATG	4 cut(s)	249, 491, 746, 881
Kzo9I	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
LmnI	GCTCC	2 cut(s)	359, 961
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	3 cut(s)	207, 569, 956
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	698, 745
MalI	GATC	6 cut(s)	81, 131, 233, 275, 644, 798
MboI	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
MboII	GAAGA	5 cut(s)	89, 495, 524, 767, 869
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	3 cut(s)	152, 198, 364
MluCI	AATT	3 cut(s)	153, 709, 860
MlyI	GAGTC	3 cut(s)	103, 130, 179
MnlI	CCTC	9 cut(s)	172, 320, 384, 385, 452, 486, 889, 952, 968
MseI	TTAA	3 cut(s)	597, 681, 816
MslI	CAYNNNNRTG	1 cut(s)	743
MspI	CCGG	3 cut(s)	356, 752, 854
MspR9I	CCNGG	3 cut(s)	357, 660, 752
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	3 cut(s)	11, 774, 878
NciI	CCSGG	2 cut(s)	357, 752
NdeII	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
NlaIII	CATG	4 cut(s)	249, 491, 746, 881
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	745
NspI	RCATGY	3 cut(s)	249, 491, 881
NspV	TTCGAA	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	881
PcsI	WCGNNNNNNNCGW	2 cut(s)	334, 710
PfeI	GAWTC	3 cut(s)	203, 299, 515
PfoI	TCCNGGA	1 cut(s)	355
PleI	GAGTC	3 cut(s)	102, 130, 179
PpsI	GAGTC	3 cut(s)	102, 130, 179
Ppu21I	YACGTR	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	892
PspPI	GGNCC	1 cut(s)	851
PstNI	CAGNNNCTG	2 cut(s)	620, 665
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	743
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	3 cut(s)	597, 681, 816
Sau3AI	GATC	6 cut(s)	79, 129, 231, 273, 642, 796
Sau96I	GGNCC	1 cut(s)	851
SchI	GAGTC	3 cut(s)	103, 130, 179
ScrFI	CCNGG	3 cut(s)	357, 660, 752
SduI	GDGCHC	3 cut(s)	152, 198, 364
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	2 cut(s)	15, 867
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	743
SphI	GCATGC	1 cut(s)	881
Sse9I	AATT	3 cut(s)	153, 709, 860
SsiI	CCGC	7 cut(s)	5, 249, 278, 521, 696, 728, 872
SspMI	CTAG	3 cut(s)	207, 569, 956
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	3 cut(s)	355, 658, 750
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	5 cut(s)	316, 380, 693, 787, 1009
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	5 cut(s)	24, 45, 272, 704, 713
TasI	AATT	3 cut(s)	153, 709, 860
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	203, 299, 515
Tru1I	TTAA	3 cut(s)	597, 681, 816
Tru9I	TTAA	3 cut(s)	597, 681, 816
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	745
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	1 cut(s)	722
TspGWI	ACGGA	1 cut(s)	945
TspRI	CASTG	1 cut(s)	319
VneI	GTGCAC	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	2 cut(s)	709, 860
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	3 cut(s)	249, 491, 881
XspI	CTAG	3 cut(s)	207, 569, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.