Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006504

Physical Location & Seq

Genomic Coordinates Forward (+)

65878728 .. 65879807

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG350300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTCGATGGCGGGTTCTGCAATTGGATTTGAAGGATATGAAAAGAGGCTGGAAATTGCATTTTTTGAACCAAGTATCTTTCGTGATCCTGAAGGAAGGGGTCTTCGATCCCTGTCCAAATCCCAGCTGGATGAGTTTCTTGGACAAGCTGAGTGCACTATTGTCTCCTCACTGTCGAACGATGAAGTCGACTCATATGTTCTTTCGGAGTCAAGCCTCTTTGTTTACTCCTACAAGATCATCATCAAAACTTGTGGGACGACTAAGTTGCTCCTAGCAATCCCACCTATCCTGAAGTTAGCTGAAAGCATTGATCTCACCGTGAGATCTGTGAGGTATACTCGTGGGAGCTTCATTTTCCCAGGAGCACAATCATTCCCTCACCGAAACTTCTCCGAAGAAGTTTCTACTCTTGACGCTTACTTTGGGAAGCTTGGGGGAGGCAGCAGAGCTTATATGATGGGTGGGTCTGACGGACCTCAGAAATGGCATGTGTATTCTGCTTCAGCTGAACCAGTTAGCTTGGTTGATCCTGTATACACCCTAGAAATGTGCATGACTGGTCTGGACAAGCAAAAGGCTTCTGTTTTCTACAAATCTGAGTCAAGCTCAGCAGCTGGAATGACTAATGATTCTGGAATCCGAAGGATCTTACCAGATTCTGATATTTGTGATTTCGAGTTTGACCCCTGTGGTTATTCGATGAATGCCATTGAAGGAGCGGCAATTTCAACCATTCATGTTACACCAGAAGATGGTTTTAGCTATGCTAGTTTTGAATCTGCAGGATATGACTTCAATGAGTTGAATCTTAACCAGTTGACTGAGAGGGTTTTGGCTTGTTTCAAACCGAGTGAGTTCTCCATTGCTGTGCATTCTGATGTTGCAGTCAAGTCACTCCAGCAAATTTGTTCATTGGATTTGAAGGGATACTGTCGCGAAGAGAGCAGCCACGAGGAGCTTGGAGTGGGTGGTTCCATTGTTCATTACAGGTTCCTCAAGACTGAGGCCTGTGGTTCTCCAAGATCAACTCTAAAAGGCTGCTGGAAAGAGGAAGATGAGGACTACGAATCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

359

Amino Acids

39.47

Weight (kDa)

4.77

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_decarbox	PF01536	9 - 332	1.4e-113	Adenosylmethionine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25570 AT3G25570
fragaria_vesca	FvH4_4g28650 FvH4_6g10680
malus_domestica	MD13G1052600.v1.1 MD16G1057400.v1.1
prunus_persica	Prupe.1G299500_v2.0.a1
pyrus_communis	pycom13g04700 pycom16g05020
rosa_chinensis	RchiOBHm_Chr4g0420801 RchiOBHm_Chr4g0436761
rosa_laevigata	RLG00000006498 RLG00000007737
rosa_multiflora	Rmu_co8473325.1_g000001 Rmu_sc0001837.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377810
rosa_rugosa	Rorug04G0295900
rosa_samantha	Rh4AG350300 Rh4BG230500 Rh4BG359100 Rh4CG242500 Rh4CG373500 Rh4DG225900 Rh4DG353200
rosa_wichuraiana	Rw4G019680 Rw4G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccBSI	CCGCTC	1 cut(s)	722
AccI	GTMKAC	3 cut(s)	189, 338, 537
AccII	CGCG	1 cut(s)	939
AciI	CCGC	2 cut(s)	11, 722
AclWI	GGATC	4 cut(s)	80, 102, 524, 656
AcsI	RAATTY	1 cut(s)	906
AcuI	CTGAAG	3 cut(s)	111, 314, 489
AfiI	CCNNNNNNNGG	1 cut(s)	755
AgsI	TTSAA	9 cut(s)	32, 68, 716, 732, 779, 799, 808, 847, 925
AjnI	CCWGG	1 cut(s)	361
Alw21I	GWGCWC	2 cut(s)	158, 370
Alw26I	GTCTC	1 cut(s)	169
Alw44I	GTGCAC	1 cut(s)	154
AlwI	GGATC	4 cut(s)	80, 102, 524, 656
AlwNI	CAGNNNCTG	2 cut(s)	617, 662
AoxI	GGCC	1 cut(s)	1008
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	444, 614, 948, 1041
ApoI	RAATTY	1 cut(s)	906
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	310, 374
AvaII	GGWCC	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	158
BauI	CACGAG	2 cut(s)	342, 953
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	158, 370
BbvI	GCAGC	4 cut(s)	456, 626, 960, 1028
BccI	CCATC	2 cut(s)	454, 749
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	1 cut(s)	923
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	3 cut(s)	275, 545, 771
BfmI	CTRYAG	1 cut(s)	783
BfuI	GTATCC	1 cut(s)	923
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	5 cut(s)	445, 615, 723, 949, 1042
BlpI	GCTNAGC	1 cut(s)	610
BlsI	GCNGC	5 cut(s)	446, 616, 724, 950, 1043
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	976, 995
BmrFI	CCNGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	95
BplI	GAGNNNNNCTC	4 cut(s)	325, 357, 593, 625
BpmI	CTGGAG	1 cut(s)	884
Bpu1102I	GCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	983
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse1I	ACTGG	3 cut(s)	515, 565, 817
Bse3DI	GCAATG	1 cut(s)	864
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	6 cut(s)	141, 494, 591, 624, 816, 996
BseNI	ACTGG	3 cut(s)	515, 565, 817
BseRI	GAGGAG	2 cut(s)	157, 971
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	456, 626, 960, 1028
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	939
BshFI	GGCC	1 cut(s)	1010
BsiHKAI	GWGCWC	2 cut(s)	158, 370
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	712, 874
BsnI	GGCC	1 cut(s)	1010
Bsp1286I	GDGCHC	2 cut(s)	158, 370
Bsp143I	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
Bsp1720I	GCTNAGC	1 cut(s)	610
Bsp68I	TCGCGA	1 cut(s)	939
BspACI	CCGC	2 cut(s)	11, 722
BspANI	GGCC	1 cut(s)	1010
BspCNI	CTCAG	6 cut(s)	142, 493, 592, 623, 817, 997
BspFNI	CGCG	1 cut(s)	939
BspLI	GGNNCC	2 cut(s)	976, 995
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	4 cut(s)	80, 102, 524, 656
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	864
BsrI	ACTGG	3 cut(s)	515, 565, 817
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
BssNAI	GTATAC	2 cut(s)	339, 538
BssSI	CACGAG	2 cut(s)	342, 953
Bst1107I	GTATAC	2 cut(s)	339, 538
Bst2BI	CACGAG	2 cut(s)	342, 953
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	174, 322, 935
Bst6I	CTCTTC	1 cut(s)	936
BstDEI	CTNAG	7 cut(s)	150, 264, 480, 600, 610, 825, 1005
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	939
BstKTI	GATC	8 cut(s)	88, 110, 240, 316, 329, 532, 651, 1028
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 945
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	4 cut(s)	456, 626, 960, 1028
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	326, 648
BstYI	RGATCY	2 cut(s)	326, 648
BstZ17I	GTATAC	2 cut(s)	339, 538
BsuI	GTATCC	1 cut(s)	923
BsuRI	GGCC	1 cut(s)	1010
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	170
BtuMI	TCGCGA	1 cut(s)	939
CaiI	CAGNNNCTG	2 cut(s)	617, 662
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	425
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	3 cut(s)	491, 556, 740
DdeI	CTNAG	7 cut(s)	150, 264, 480, 600, 610, 825, 1005
DpnI	GATC	8 cut(s)	87, 109, 239, 315, 328, 531, 650, 1027
DpnII	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Eco147I	AGGCCT	1 cut(s)	1010
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	3 cut(s)	111, 314, 489
EcoRII	CCWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	494, 559, 743
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	3 cut(s)	490, 555, 739
FauI	CCCGC	1 cut(s)	4
FauNDI	CATATG	1 cut(s)	196
FblI	GTMKAC	3 cut(s)	189, 338, 537
Fnu4HI	GCNGC	5 cut(s)	445, 615, 723, 949, 1042
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	5 cut(s)	445, 615, 723, 949, 1042
FspBI	CTAG	3 cut(s)	275, 545, 771
GluI	GCNGC	5 cut(s)	445, 615, 723, 949, 1042
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	884
HaeIII	GGCC	1 cut(s)	1010
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	3 cut(s)	494, 559, 743
HincII	GTYRAC	2 cut(s)	190, 822
HindII	GTYRAC	2 cut(s)	190, 822
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	9 cut(s)	191, 209, 602, 632, 639, 659, 779, 808, 1070
HphI	GGTGA	2 cut(s)	310, 374
Hpy166II	GTNNAC	6 cut(s)	156, 190, 226, 339, 538, 822
Hpy188I	TCNGA	8 cut(s)	208, 397, 472, 483, 601, 644, 664, 880
Hpy188III	TCNNGA	9 cut(s)	83, 89, 292, 413, 566, 636, 938, 1000, 1077
Hpy8I	GTNNAC	6 cut(s)	156, 190, 226, 339, 538, 822
HpyAV	CCTTC	6 cut(s)	26, 86, 90, 639, 710, 919
HpyCH4III	ACNGT	3 cut(s)	174, 322, 935
HpyCH4V	TGCA	7 cut(s)	20, 59, 156, 555, 785, 874, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 945
HpyF3I	CTNAG	7 cut(s)	150, 264, 480, 600, 610, 825, 1005
Hsp92II	CATG	3 cut(s)	494, 559, 743
Kzo9I	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
LmnI	GCTCC	5 cut(s)	276, 348, 365, 719, 958
Lsp1109I	GCAGC	4 cut(s)	456, 626, 960, 1028
MaeI	CTAG	3 cut(s)	275, 545, 771
MaeIII	GTNAC	2 cut(s)	742, 894
MalI	GATC	8 cut(s)	87, 109, 239, 315, 328, 531, 650, 1027
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
MboII	GAAGA	5 cut(s)	95, 410, 764, 953, 1067
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	2 cut(s)	326, 648
MhlI	GDGCHC	2 cut(s)	158, 370
MluCI	AATT	4 cut(s)	21, 54, 726, 906
MlyI	GAGTC	3 cut(s)	185, 218, 611
MseI	TTAA	1 cut(s)	813
MslI	CAYNNNNRTG	2 cut(s)	869, 879
MspA1I	CMGCKG	3 cut(s)	127, 509, 617
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	2 cut(s)	712, 874
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	2 cut(s)	17, 945
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
NlaIII	CATG	3 cut(s)	494, 559, 743
NlaIV	GGNNCC	2 cut(s)	976, 995
NmuCI	GTSAC	1 cut(s)	894
NruI	TCGCGA	1 cut(s)	939
NspI	RCATGY	1 cut(s)	494
PceI	AGGCCT	1 cut(s)	1010
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	2 cut(s)	712, 874
PfeI	GAWTC	6 cut(s)	632, 639, 659, 779, 808, 1070
PflMI	CCANNNNNTGG	1 cut(s)	755
PkrI	GCNGC	5 cut(s)	446, 616, 724, 950, 1043
PleI	GAGTC	3 cut(s)	185, 217, 610
PpsI	GAGTC	3 cut(s)	185, 217, 610
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	976, 995
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	787
PstNI	CAGNNNCTG	2 cut(s)	617, 662
PsuI	RGATCY	2 cut(s)	326, 648
PvuII	CAGCTG	3 cut(s)	127, 509, 617
RruI	TCGCGA	1 cut(s)	939
RseI	CAYNNNNRTG	2 cut(s)	869, 879
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	813
SatI	GCNGC	5 cut(s)	445, 615, 723, 949, 1042
Sau3AI	GATC	8 cut(s)	85, 107, 237, 313, 326, 529, 648, 1025
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	185, 218, 611
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	158, 370
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	869, 879
SmlI	CTYRAG	1 cut(s)	998
SmoI	CTYRAG	1 cut(s)	998
Sse9I	AATT	4 cut(s)	21, 54, 726, 906
SseBI	AGGCCT	1 cut(s)	1010
SsiI	CCGC	2 cut(s)	11, 722
SspMI	CTAG	3 cut(s)	275, 545, 771
StuI	AGGCCT	1 cut(s)	1010
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	3 cut(s)	174, 322, 935
TaqI	TCGA	6 cut(s)	5, 106, 176, 189, 678, 701
TasI	AATT	4 cut(s)	21, 54, 726, 906
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	6 cut(s)	632, 639, 659, 779, 808, 1070
Tru1I	TTAA	1 cut(s)	813
Tru9I	TTAA	1 cut(s)	813
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	894
TseI	GCWGC	4 cut(s)	444, 614, 948, 1041
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	7 cut(s)	54, 198, 343, 719, 728, 903, 974
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	755
VneI	GTGCAC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	1 cut(s)	906
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	2 cut(s)	124, 959
XmiI	GTMKAC	3 cut(s)	189, 338, 537
XspI	CTAG	3 cut(s)	275, 545, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.