Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006504

Physical Location & Seq

Genomic Coordinates Reverse (-)

43148356 .. 43152734

Gene Structure 4379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTAACTATGGGTAGGAAGCAGGAACCATATGATGAGGTGTTGACAAAGATAATGGATGCGGTCAAGTGTAGCATAGTTGAGACTGCTAACAAGCTCTCCAATGACTTTCTTAATGCCTATCTGCTTTCAAAATCAATCATGTTCATTTTCCCAATTAAACTCATTGTGAAGACTTGTGGGGTAACCACTCCATTGTCCTTGCTCAAGCCTTTGTTGGATGAAGCTAAAGATCTCAAGTTATTTCCAAACGATGTTGTTTACACAAGAGGAAGCTTTATCTTTCCCCACTTACAAGATAACAACCATCATTTAACTCTTGAGGTGTGTATGACGGGTTTTGATGATGAAAAAGCTGTTGTACATATATCTAGCATACGAAGAATTCTTCCTGACTTTAAGATAACTGCTATTGCCTTTGATCCATCTAGCTACAGTATGAATGAATTTAGTTTTGTTTCTTATGAGTATTATGGCTATTATTTCAACACTCTGAACTTTCAAGAGCTACTAGCAAGGGTATTCGCATGTTTCAAGTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016032 GO:0016458 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0019058 GO:0019079 GO:0019222 GO:0032501 GO:0032502 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048731 GO:0048856 GO:0050789 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

181

Amino Acids

20.81

Weight (kDa)

6.41

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_decarbox	PF01536	13 - 103	5.9e-25	Adenosylmethionine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25570 AT3G25570
fragaria_vesca	FvH4_4g28650 FvH4_6g10680
malus_domestica	MD13G1052600.v1.1 MD16G1057400.v1.1
prunus_persica	Prupe.1G299500_v2.0.a1
pyrus_communis	pycom13g04700 pycom16g05020
rosa_chinensis	RchiOBHm_Chr4g0420801 RchiOBHm_Chr4g0436761
rosa_laevigata	RLG00000006498 RLG00000007737
rosa_multiflora	Rmu_co8473325.1_g000001 Rmu_sc0001837.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377810
rosa_rugosa	Rorug04G0295900
rosa_samantha	Rh4AG350300 Rh4BG230500 Rh4BG359100 Rh4CG242500 Rh4CG373500 Rh4DG225900 Rh4DG353200
rosa_wichuraiana	Rw4G019680 Rw4G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	384, 446
AfaI	GTAC	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	132, 487, 503, 535
AluBI	AGCT	6 cut(s)	97, 227, 276, 356, 432, 508
AluI	AGCT	6 cut(s)	97, 227, 276, 356, 432, 508
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	416
ApoI	RAATTY	2 cut(s)	384, 446
BbsI	GAAGAC	1 cut(s)	179
BccI	CCATC	2 cut(s)	315, 433
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	372, 429, 512
BfmI	CTRYAG	1 cut(s)	433
BglII	AGATCT	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	179
BpuEI	CTTGAG	3 cut(s)	191, 221, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
BseGI	GGATG	2 cut(s)	64, 226
BsmAI	GTCTC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	232, 421
BspACI	CCGC	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	361
BssMI	GATC	2 cut(s)	232, 421
Bst4CI	ACNGT	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	361
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	64, 226
BstKTI	GATC	2 cut(s)	235, 424
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	232, 421
BstNSI	RCATGY	1 cut(s)	531
BstPI	GGTNACC	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	64, 226
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	2 cut(s)	142, 528
CviJI	RGCY	8 cut(s)	97, 211, 227, 276, 356, 432, 477, 508
CviKI_1	RGCY	8 cut(s)	97, 211, 227, 276, 356, 432, 477, 508
CviQI	GTAC	1 cut(s)	362
DpnI	GATC	2 cut(s)	234, 423
DpnII	GATC	2 cut(s)	232, 421
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	384
FaeI	CATG	2 cut(s)	145, 531
FatI	CATG	2 cut(s)	141, 527
FauNDI	CATATG	1 cut(s)	31
FokI	GGATG	2 cut(s)	71, 233
FspBI	CTAG	3 cut(s)	372, 429, 512
Hin1II	CATG	2 cut(s)	145, 531
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	45, 262
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	3 cut(s)	320, 392, 503
Hpy8I	GTNNAC	2 cut(s)	45, 262
HpyCH4III	ACNGT	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	145, 531
Kzo9I	GATC	2 cut(s)	232, 421
LpnPI	CCDG	2 cut(s)	8, 405
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	3 cut(s)	372, 429, 512
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	234, 423
MboI	GATC	2 cut(s)	232, 421
MboII	GAAGA	3 cut(s)	184, 380, 393
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	3 cut(s)	156, 384, 446
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	3 cut(s)	31, 263, 316
MseI	TTAA	4 cut(s)	114, 159, 314, 399
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	232, 421
NlaIII	CATG	2 cut(s)	145, 531
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	531
PspEI	GGTNACC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	4 cut(s)	114, 159, 314, 399
Sau3AI	GATC	2 cut(s)	232, 421
SetI	ASST	8 cut(s)	42, 99, 229, 278, 327, 358, 434, 510
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	433
SmlI	CTYRAG	3 cut(s)	206, 236, 320
SmoI	CTYRAG	3 cut(s)	206, 236, 320
Sse9I	AATT	3 cut(s)	156, 384, 446
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	3 cut(s)	372, 429, 512
TaaI	ACNGT	1 cut(s)	437
TasI	AATT	3 cut(s)	156, 384, 446
TatI	WGTACW	1 cut(s)	361
Tru1I	TTAA	4 cut(s)	114, 159, 314, 399
Tru9I	TTAA	4 cut(s)	114, 159, 314, 399
TspDTI	ATGAA	5 cut(s)	136, 237, 363, 455, 459
XapI	RAATTY	2 cut(s)	384, 446
XceI	RCATGY	1 cut(s)	531
XspI	CTAG	3 cut(s)	372, 429, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.