Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006504

Physical Location & Seq

Genomic Coordinates Reverse (-)

39518699 .. 39518995

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG230500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGTAGGAAGCAGGAACCATATGATAAGGTGTTGACAAAGATGATGGATGCGGTCAAGTGTAGCATAGTTGAGACTGCTAACAAGCTCTCCAATGACTTTCTCAATGCCTATCTGCTTTCAGAATCAAGCATGTTCATTTTCCCAATTAAACTCATTGTGAAGACTTGCGAGGTAACCATTCCATTGTCCTTGCTCAAGCCTTTGTTGGATGAAGCTAAAGATCTCAAGTTATTTCCAAACGACGTTGTTTACACAAGAGGAAGCTTTATATTTCCCCACTTACAAGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

98

Amino Acids

11.2

Weight (kDa)

7.73

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_decarbox	PF01536	10 - 97	3.5e-24	Adenosylmethionine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25570 AT3G25570
fragaria_vesca	FvH4_4g28650 FvH4_6g10680
malus_domestica	MD13G1052600.v1.1 MD16G1057400.v1.1
prunus_persica	Prupe.1G299500_v2.0.a1
pyrus_communis	pycom13g04700 pycom16g05020
rosa_chinensis	RchiOBHm_Chr4g0420801 RchiOBHm_Chr4g0436761
rosa_laevigata	RLG00000006498 RLG00000007737
rosa_multiflora	Rmu_co8473325.1_g000001 Rmu_sc0001837.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377810
rosa_rugosa	Rorug04G0295900
rosa_samantha	Rh4AG350300 Rh4BG230500 Rh4BG359100 Rh4CG242500 Rh4CG373500 Rh4DG225900 Rh4DG353200
rosa_wichuraiana	Rw4G019680 Rw4G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AluBI	AGCT	3 cut(s)	88, 218, 267
AluI	AGCT	3 cut(s)	88, 218, 267
Alw26I	GTCTC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	170
BccI	CCATC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	182, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
BseGI	GGATG	2 cut(s)	55, 217
BsmAI	GTCTC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	18
BssMI	GATC	1 cut(s)	223
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	2 cut(s)	55, 217
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	55, 217
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	4 cut(s)	88, 202, 218, 267
CviKI_1	RGCY	4 cut(s)	88, 202, 218, 267
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	175
FaeI	CATG	1 cut(s)	136
FaiI	YATR	5 cut(s)	22, 24, 68, 134, 272
FatI	CATG	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	22
FokI	GGATG	2 cut(s)	62, 224
Hin1II	CATG	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	36, 253
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	36, 253
Hpy99I	CGWCG	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	223
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	2 cut(s)	166, 254
MseI	TTAA	1 cut(s)	150
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	18
NspI	RCATGY	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	125
PspEI	GGTNACC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	223
SetI	ASST	6 cut(s)	33, 90, 177, 220, 249, 269
SfaNI	GCATC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	197, 227
SmoI	CTYRAG	2 cut(s)	197, 227
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	53
TaiI	ACGT	1 cut(s)	249
TasI	AATT	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	127, 228
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.