Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006504

Physical Location & Seq

Genomic Coordinates Reverse (-)

7697509 .. 7698591

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006498

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTCGATGGCGGGTTCTGCAATTGGATTTGAAGGATACGAAAAGAGGCTGGAAATTGCATTTTTTGAACCAAGTATCTTTCGTGATCCCCAAGGAAGGGGTCTTCGATCCCTGTCCAAATCCCAGCTGGATGAGTTTCTTGGACAAGCTGAGTGCACTATTGTCTCATCACTGTCGAACAATGAAGTCGACTCGTATGTTCTTTCAGAGTCGAGCCTCTTTGTTTACTCCTACAAGATCATCATCAAAACTTGTGGGACGACTAAGTTGCTCCTAGCAATCCCACCTATCCTGAAGTTAGCTGAAAGCATTGATCTCACCGTGAGATCTGTGAGGTATACTCGTGGGAGCTTCATTTTCCCAGGAGCACAATCATTCCCTCACCGAAACTTCTCCGAAGAAGTTTCTACTCTTGACGCGTACTTTGGGAAGCTTGGGGGAGGCAGCAGAGCTTATAGGATGGGCGGGTCGTCTGACGGACCTCAGAAATGGCATGTGTATTCTGCTTCAGCTGAACCAGTTAGCTTGGTTGATCCTGTATACACCCTAGAAATGTGCATGACTGGTCTGGACAAGCAAAAGGCTTCTGTTTTCTACAAATCTGAGTCAAGCTCAGCAGCTGGAATGACTAATGATTCTGGAATCCGAAGGATCCTACCAGATTCTGAGATTTGTGATTTCGAGTTTGACCCCTGTGGTTATTCGATGAATGCCATTGAAGGAGCGGCAATTTCAACCATTCATGTTACACCAGAAGATGGTTTTAGCTATGCTAGTTTTGAATCCGCAGGATATGACTTCAATGAGTTGAATCTTAACCAGTTGACTGAGAGGGTTTTGGCTTGTTTCAAACCGAGTGAGTTCTCCATTGCTGTGCATGCTGATGTTGCAGTCAAGTCACTCCAGCAAATTTGTTCATTGGATTTGAAGGGATACTGTCGCGAAGAGAGCAGCCACGAGGAGCTTGGAATGGGTGGTTCCATTGTTCATTACAGGTTCCTCAAGACTGAAGCCTGTGGTTCTCCAAGATCAACTCTTAAAGGCTGCTGGAAAGAGGAAGATGAGGACTACGAATCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

361

Amino Acids

39.61

Weight (kDa)

4.9

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_decarbox	PF01536	9 - 333	1.2e-112	Adenosylmethionine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25570 AT3G25570
fragaria_vesca	FvH4_4g28650 FvH4_6g10680
malus_domestica	MD13G1052600.v1.1 MD16G1057400.v1.1
prunus_persica	Prupe.1G299500_v2.0.a1
pyrus_communis	pycom13g04700 pycom16g05020
rosa_chinensis	RchiOBHm_Chr4g0420801 RchiOBHm_Chr4g0436761
rosa_laevigata	RLG00000006498 RLG00000007737
rosa_multiflora	Rmu_co8473325.1_g000001 Rmu_sc0001837.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377810
rosa_rugosa	Rorug04G0295900
rosa_samantha	Rh4AG350300 Rh4BG230500 Rh4BG359100 Rh4CG242500 Rh4CG373500 Rh4DG225900 Rh4DG353200
rosa_wichuraiana	Rw4G019680 Rw4G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	758
AccBSI	CCGCTC	1 cut(s)	725
AccI	GTMKAC	3 cut(s)	189, 338, 540
AccII	CGCG	2 cut(s)	419, 942
AciI	CCGC	4 cut(s)	11, 465, 725, 786
AclWI	GGATC	5 cut(s)	80, 102, 527, 646, 659
AcsI	RAATTY	1 cut(s)	909
AcuI	CTGAAG	3 cut(s)	314, 492, 1029
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	96, 97, 758
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	9 cut(s)	32, 68, 719, 735, 782, 802, 811, 850, 928
AjnI	CCWGG	1 cut(s)	361
Alw21I	GWGCWC	2 cut(s)	158, 370
Alw26I	GTCTC	1 cut(s)	169
Alw44I	GTGCAC	1 cut(s)	154
AlwI	GGATC	5 cut(s)	80, 102, 527, 646, 659
AlwNI	CAGNNNCTG	2 cut(s)	620, 665
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	444, 617, 951, 1044
ApoI	RAATTY	1 cut(s)	909
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	310, 374
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	651
BauI	CACGAG	2 cut(s)	342, 956
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	158, 370
BbvI	GCAGC	4 cut(s)	456, 629, 963, 1031
BccI	CCATC	2 cut(s)	454, 752
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	2 cut(s)	29, 926
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	3 cut(s)	275, 548, 774
BfuI	GTATCC	2 cut(s)	29, 926
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	5 cut(s)	445, 618, 726, 952, 1045
BlpI	GCTNAGC	1 cut(s)	613
BlsI	GCNGC	5 cut(s)	446, 619, 727, 953, 1046
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	3 cut(s)	653, 979, 998
BmrFI	CCNGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	95
BplI	GAGNNNNNCTC	4 cut(s)	325, 357, 596, 628
BpmI	CTGGAG	1 cut(s)	887
Bpu1102I	GCTNAGC	1 cut(s)	613
BpuEI	CTTGAG	1 cut(s)	986
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	91, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 97, 758
Bse1I	ACTGG	3 cut(s)	518, 568, 820
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	91, 361
BseGI	GGATG	2 cut(s)	136, 465
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	96, 97, 758
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	6 cut(s)	141, 497, 594, 627, 657, 819
BseNI	ACTGG	3 cut(s)	518, 568, 820
BseRI	GAGGAG	1 cut(s)	974
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	456, 629, 963, 1031
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	2 cut(s)	419, 942
BsiHKAI	GWGCWC	2 cut(s)	158, 370
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	96, 97, 758
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	715
Bsp1286I	GDGCHC	2 cut(s)	158, 370
Bsp143I	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
Bsp1720I	GCTNAGC	1 cut(s)	613
Bsp68I	TCGCGA	1 cut(s)	942
BspACI	CCGC	4 cut(s)	11, 465, 725, 786
BspCNI	CTCAG	6 cut(s)	142, 496, 595, 626, 658, 820
BspFNI	CGCG	2 cut(s)	419, 942
BspLI	GGNNCC	3 cut(s)	653, 979, 998
BspPI	GGATC	5 cut(s)	80, 102, 527, 646, 659
BsrBI	CCGCTC	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	3 cut(s)	518, 568, 820
BssECI	CCNNGG	2 cut(s)	91, 361
BssMI	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
BssNAI	GTATAC	2 cut(s)	339, 541
BssSI	CACGAG	2 cut(s)	342, 956
BssT1I	CCWWGG	1 cut(s)	91
Bst1107I	GTATAC	2 cut(s)	339, 541
Bst2BI	CACGAG	2 cut(s)	342, 956
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	174, 322, 938
Bst6I	CTCTTC	1 cut(s)	939
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	7 cut(s)	150, 264, 483, 603, 613, 666, 828
BstF5I	GGATG	2 cut(s)	136, 465
BstFNI	CGCG	2 cut(s)	419, 942
BstKTI	GATC	8 cut(s)	88, 110, 240, 316, 329, 535, 654, 1031
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 878, 887, 948
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	497, 881
BstSCI	CCNGG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	2 cut(s)	419, 942
BstV1I	GCAGC	4 cut(s)	456, 629, 963, 1031
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	326, 651
BstYI	RGATCY	2 cut(s)	326, 651
BstZ17I	GTATAC	2 cut(s)	339, 541
BsuI	GTATCC	2 cut(s)	29, 926
BtsCI	GGATG	2 cut(s)	136, 465
BtsIMutI	CAGTG	1 cut(s)	170
BtuMI	TCGCGA	1 cut(s)	942
Cac8I	GCNNGC	1 cut(s)	879
CaiI	CAGNNNCTG	2 cut(s)	620, 665
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	421
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	4 cut(s)	494, 559, 743, 878
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	7 cut(s)	150, 264, 483, 603, 613, 666, 828
DpnI	GATC	8 cut(s)	87, 109, 239, 315, 328, 534, 653, 1030
DpnII	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Eco130I	CCWWGG	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	3 cut(s)	314, 492, 1029
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	4 cut(s)	497, 562, 746, 881
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	4 cut(s)	493, 558, 742, 877
FauI	CCCGC	2 cut(s)	4, 458
FblI	GTMKAC	3 cut(s)	189, 338, 540
Fnu4HI	GCNGC	5 cut(s)	445, 618, 726, 952, 1045
FokI	GGATG	2 cut(s)	143, 472
Fsp4HI	GCNGC	5 cut(s)	445, 618, 726, 952, 1045
FspBI	CTAG	3 cut(s)	275, 548, 774
GluI	GCNGC	5 cut(s)	445, 618, 726, 952, 1045
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	887
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	4 cut(s)	497, 562, 746, 881
HincII	GTYRAC	2 cut(s)	190, 825
HindII	GTYRAC	2 cut(s)	190, 825
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	9 cut(s)	191, 209, 605, 635, 642, 662, 782, 811, 1073
HphI	GGTGA	2 cut(s)	310, 374
Hpy166II	GTNNAC	6 cut(s)	156, 190, 226, 339, 541, 825
Hpy188I	TCNGA	7 cut(s)	208, 397, 475, 486, 604, 647, 667
Hpy188III	TCNNGA	8 cut(s)	83, 292, 413, 569, 639, 941, 1003, 1080
Hpy8I	GTNNAC	6 cut(s)	156, 190, 226, 339, 541, 825
HpyAV	CCTTC	5 cut(s)	26, 90, 642, 713, 922
HpyCH4III	ACNGT	3 cut(s)	174, 322, 938
HpyCH4V	TGCA	6 cut(s)	20, 59, 156, 558, 877, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 878, 887, 948
HpyF3I	CTNAG	7 cut(s)	150, 264, 483, 603, 613, 666, 828
Hsp92II	CATG	4 cut(s)	497, 562, 746, 881
Kzo9I	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
LmnI	GCTCC	5 cut(s)	276, 348, 365, 722, 961
Lsp1109I	GCAGC	4 cut(s)	456, 629, 963, 1031
MaeI	CTAG	3 cut(s)	275, 548, 774
MaeIII	GTNAC	2 cut(s)	745, 897
MalI	GATC	8 cut(s)	87, 109, 239, 315, 328, 534, 653, 1030
MbiI	CCGCTC	1 cut(s)	725
MboI	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
MboII	GAAGA	5 cut(s)	95, 410, 767, 956, 1070
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	2 cut(s)	326, 651
MhlI	GDGCHC	2 cut(s)	158, 370
MluCI	AATT	4 cut(s)	21, 54, 729, 909
MluI	ACGCGT	1 cut(s)	417
MlyI	GAGTC	3 cut(s)	185, 218, 614
MseI	TTAA	2 cut(s)	816, 1038
MslI	CAYNNNNRTG	2 cut(s)	872, 882
MspA1I	CMGCKG	3 cut(s)	127, 512, 620
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	2 cut(s)	419, 942
MwoI	GCNNNNNNNGC	4 cut(s)	17, 878, 887, 948
NdeII	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
NlaIII	CATG	4 cut(s)	497, 562, 746, 881
NlaIV	GGNNCC	3 cut(s)	653, 979, 998
NmuCI	GTSAC	1 cut(s)	897
NruI	TCGCGA	1 cut(s)	942
NspI	RCATGY	2 cut(s)	497, 881
PaeI	GCATGC	1 cut(s)	881
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	6 cut(s)	635, 642, 662, 782, 811, 1073
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	5 cut(s)	446, 619, 727, 953, 1046
PleI	GAGTC	3 cut(s)	185, 217, 613
PpsI	GAGTC	3 cut(s)	185, 217, 613
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	653, 979, 998
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	2 cut(s)	620, 665
PsuI	RGATCY	2 cut(s)	326, 651
PvuII	CAGCTG	3 cut(s)	127, 512, 620
RruI	TCGCGA	1 cut(s)	942
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	2 cut(s)	872, 882
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	816, 1038
SatI	GCNGC	5 cut(s)	445, 618, 726, 952, 1045
Sau3AI	GATC	8 cut(s)	85, 107, 237, 313, 326, 532, 651, 1028
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	3 cut(s)	185, 218, 614
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	158, 370
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	2 cut(s)	872, 882
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
SphI	GCATGC	1 cut(s)	881
Sse9I	AATT	4 cut(s)	21, 54, 729, 909
SsiI	CCGC	4 cut(s)	11, 465, 725, 786
SspMI	CTAG	3 cut(s)	275, 548, 774
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	3 cut(s)	174, 322, 938
TaqI	TCGA	7 cut(s)	5, 106, 176, 189, 212, 681, 704
TasI	AATT	4 cut(s)	21, 54, 729, 909
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	6 cut(s)	635, 642, 662, 782, 811, 1073
Tru1I	TTAA	2 cut(s)	816, 1038
Tru9I	TTAA	2 cut(s)	816, 1038
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	897
TseI	GCWGC	4 cut(s)	444, 617, 951, 1044
Tsp45I	GTSAC	1 cut(s)	897
TspDTI	ATGAA	6 cut(s)	198, 343, 722, 731, 906, 977
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	758
VneI	GTGCAC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	909
XceI	RCATGY	2 cut(s)	497, 881
XcmI	CCANNNNNNNNNTGG	2 cut(s)	124, 962
XmiI	GTMKAC	3 cut(s)	189, 338, 540
XspI	CTAG	3 cut(s)	275, 548, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.