RLG00000007737

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006504
Physical Location & Seq
Forward (+)
20472281 .. 20473163
883 bp
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UTR
Exon/CDS
Intron
RLM00000007737

Sequence Viewer

Length: 495 bp
ATGCTAACTATGGATAAGAAGCAGGAACCATATGATGAGGTGTTGACAAAGATGATGGATGCGGCCAAATGTAGCATAGTTGAGACTGCTGACAAGCTCTCCAATGACTTTCTTAATGCCTATCTGCTTTCAAAATCAAGCATGTTCATTTTTCCAATTAAACTTATTGTGAAGACTTGTGGGTTAACCACTCCATTGTCCTTGCTCAAGCCTTTGTTGGATGAAGCTAAAGATCTCACATTATTTCCAAACGGCGTTGTTTACACAAAAAGAAGTTTGATCTTTTCCCACTTACAAGACAAGCAACACAACAATTTTGCTGAGGAAACCAATGTTTTGAATAACTTTTTTGACAAAATTGGTAATGAGAGTGCTGTGCTGGGTAACCAAACTGGCATGCAATGGCATGTTTATTTTTCTGGCGACAGCAACCATCAATTAACTCTTGAGGTGTGTATGACGGGTTTGGATGATGAAAAAGCTGTTGTAACATAA

Protein Analysis

165

Amino Acids

18.46

Weight (kDa)

5.13

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 13 - 161 1.4e-38 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 63
AgsI TTSAA 2 cut(s) 132, 340
AluBI AGCT 3 cut(s) 97, 227, 482
AluI AGCT 3 cut(s) 97, 227, 482
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 49, 441
BceAI ACGGC 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 77
BglII AGATCT 1 cut(s) 232
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 191, 467
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 407
BseGI GGATG 3 cut(s) 64, 226, 475
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 379
BshFI GGCC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 232, 279
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 397
BssMI GATC 2 cut(s) 232, 279
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 321
BstEII GGTNACC 1 cut(s) 383
BstF5I GGATG 3 cut(s) 64, 226, 475
BstKTI GATC 2 cut(s) 235, 282
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 232, 279
BstNSI RCATGY 3 cut(s) 145, 400, 410
BstPI GGTNACC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 3 cut(s) 64, 226, 475
Cac8I GCNNGC 1 cut(s) 398
CviAII CATG 3 cut(s) 142, 397, 407
CviJI RGCY 5 cut(s) 65, 97, 211, 227, 482
CviKI_1 RGCY 5 cut(s) 65, 97, 211, 227, 482
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 234, 281
DpnII GATC 2 cut(s) 232, 279
EaeI YGGCCR 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 383
FaeI CATG 3 cut(s) 145, 400, 410
FaiI YATR 9 cut(s) 11, 31, 33, 77, 143, 398, 408, 458, 493
FatI CATG 3 cut(s) 141, 396, 406
FauNDI CATATG 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 3 cut(s) 71, 233, 482
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 3 cut(s) 145, 400, 410
HincII GTYRAC 2 cut(s) 45, 186
HindII GTYRAC 2 cut(s) 45, 186
HpaI GTTAAC 1 cut(s) 186
Hpy166II GTNNAC 3 cut(s) 45, 186, 262
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 3 cut(s) 45, 186, 262
HpyCH4V TGCA 1 cut(s) 400
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 3 cut(s) 145, 400, 410
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 232, 279
LpnPI CCDG 4 cut(s) 8, 365, 378, 405
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 383, 487
MalI GATC 2 cut(s) 234, 281
MboI GATC 2 cut(s) 232, 279
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 232
MluCI AATT 4 cut(s) 156, 313, 357, 437
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 31, 316, 442
MseI TTAA 4 cut(s) 114, 159, 185, 440
NdeI CATATG 1 cut(s) 31
NdeII GATC 2 cut(s) 232, 279
NlaIII CATG 3 cut(s) 145, 400, 410
NlaIV GGNNCC 1 cut(s) 27
NspI RCATGY 3 cut(s) 145, 400, 410
PaeI GCATGC 1 cut(s) 400
PkrI GCNGC 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 232
SaqAI TTAA 4 cut(s) 114, 159, 185, 440
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 232, 279
SetI ASST 5 cut(s) 42, 99, 229, 453, 484
SfaNI GCATC 1 cut(s) 49
SmlI CTYRAG 2 cut(s) 206, 446
SmoI CTYRAG 2 cut(s) 206, 446
SphI GCATGC 1 cut(s) 400
Sse9I AATT 4 cut(s) 156, 313, 357, 437
SsiI CCGC 1 cut(s) 62
TasI AATT 4 cut(s) 156, 313, 357, 437
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 4 cut(s) 114, 159, 185, 440
Tru9I TTAA 4 cut(s) 114, 159, 185, 440
TspDTI ATGAA 3 cut(s) 136, 237, 489
XceI RCATGY 3 cut(s) 145, 400, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.