Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006504

Physical Location & Seq

Genomic Coordinates Reverse (-)

29461785 .. 29463241

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCCATGGCGGTCTCTGCAATTGGATTTGAAGGTTTCGAAAAGAGGCTAGAAATATCATTTTTTGAACCGAGCATCTTCGTTGATCCTGAAGGAAGGGGTCTTCGATCTCTGGCCAAAGCTCAGATAGATGCCCTTCTTGACGAAGCTGAATGCACTATCGTCTCTTCATTGTCAAATGATCATGTGGACTCCTATGTTCTTTCTGAGTCAAGCCTCTTTATTTATCCGTACAAGATGATCATCAAAACTTGTGGGACAACCAAGTTGCTCCTTGTGATCCCGCCTCTCCTGAAGTTGGCTGAAACCATTTCCCTTTCTGTGAGATCTGTGAAGTACACTCGCGGGAGTTTCATTTTTCCAGGGGCACAGTCATACCCTCATCGTAACTTCTCAGAGGAAGTTTCTGTCCTTGACGGCTACTTTGGAAAGCTTGGTTCAGGAAGCAGGGCGTATGTGATGGGTCGGTCAGATGGACCTCAGAAATGGCATGTGTATTCTGCTTCTGCTGAATCAGGAAGCTTAGTTGACCCTGTTTACACTCTAGAAATGTGCATGACTGGTTTGGACAGGGAGAAGGCTTCTGTGTTCTACAAATCCCAATCAAGCTCTGCAGCTGCAATGACAAACGATTCTGGTATCCGAAAGATCCTTCCAGATTCTGATATTTGCGATTTCGAGTTTGACCCCTGTGGTTATTCCATGAATTCCATTGAAGGAGCTGCAATTTCAACCATTCATGTTACACCCGAAGATGGTTTCAGTTATGCAAGTTTTGAAACAGCTGGATATGATCTGAAAGATGTGAATATCAACCAGTTGGTTGAGAGGGTCCTGGCTTGTTTCCAACCGAGGGAGTTCTCCATTGCTGTGCACGCTGATGTTGCTACCAAGTCACTCCAGCAACTATCTTCAGTGGATTTGAAGGGATACTGTCGCAAAGAGAGCAGCCACGAAGAGCTTGGAATGGGTGGTTCCATTGTCTACAATAGGTTCCTCAAGACTGAGCGCTGTGGTTCTCCTAGATCAACTCTTAAAGGCTGCTGGAGAGATGAAGAAGAGGAAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

358

Amino Acids

39.38

Weight (kDa)

4.95

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25570 AT3G25570
fragaria_vesca	FvH4_4g28650 FvH4_6g10680
malus_domestica	MD13G1052600.v1.1 MD16G1057400.v1.1
prunus_persica	Prupe.1G299500_v2.0.a1
pyrus_communis	pycom13g04700 pycom16g05020
rosa_chinensis	RchiOBHm_Chr4g0420801 RchiOBHm_Chr4g0436761
rosa_laevigata	RLG00000006498 RLG00000007737
rosa_multiflora	Rmu_co8473325.1_g000001 Rmu_sc0001837.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377810
rosa_rugosa	Rorug04G0295900
rosa_samantha	Rh4AG350300 Rh4BG230500 Rh4BG359100 Rh4CG242500 Rh4CG373500 Rh4DG225900 Rh4DG353200
rosa_wichuraiana	Rw4G019680 Rw4G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	984
AccII	CGCG	1 cut(s)	345
AciI	CCGC	3 cut(s)	11, 284, 345
AclWI	GGATC	3 cut(s)	80, 274, 643
AcoI	YGGCCR	2 cut(s)	3, 114
AcsI	RAATTY	1 cut(s)	706
AcuI	CTGAAG	3 cut(s)	111, 314, 897
AfaI	GTAC	2 cut(s)	233, 338
AfeI	AGCGCT	1 cut(s)	1010
AfiI	CCNNNNNNNGG	3 cut(s)	298, 755, 853
AgsI	TTSAA	6 cut(s)	32, 68, 716, 732, 779, 925
AjnI	CCWGG	2 cut(s)	361, 834
AluBI	AGCT	9 cut(s)	122, 149, 433, 522, 609, 617, 722, 785, 961
AluI	AGCT	9 cut(s)	122, 149, 433, 522, 609, 617, 722, 785, 961
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	2 cut(s)	19, 169
Alw44I	GTGCAC	1 cut(s)	872
AlwI	GGATC	3 cut(s)	80, 274, 643
AlwNI	CAGNNNCTG	1 cut(s)	662
Aor51HI	AGCGCT	1 cut(s)	1010
AoxI	GGCC	2 cut(s)	3, 114
ApaLI	GTGCAC	1 cut(s)	872
ApeKI	GCWGC	5 cut(s)	614, 617, 722, 948, 1041
ApoI	RAATTY	1 cut(s)	706
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AspLEI	GCGC	1 cut(s)	1011
AspS9I	GGNCC	2 cut(s)	476, 832
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	476, 832
BaeGI	GKGCMC	2 cut(s)	370, 876
BalI	TGGCCA	2 cut(s)	5, 116
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	5 cut(s)	604, 626, 709, 960, 1028
BccI	CCATC	3 cut(s)	454, 467, 749
BceAI	ACGGC	1 cut(s)	433
BciT130I	CCWGG	2 cut(s)	363, 836
BciVI	GTATCC	2 cut(s)	650, 923
BclI	TGATCA	2 cut(s)	181, 240
BcoDI	GTCTC	2 cut(s)	19, 169
BfaI	CTAG	3 cut(s)	50, 545, 1023
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	1012
BfuI	GTATCC	2 cut(s)	650, 923
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	5 cut(s)	615, 618, 723, 949, 1042
BlsI	GCNGC	5 cut(s)	616, 619, 724, 950, 1043
Bme1390I	CCNGG	2 cut(s)	363, 836
Bme18I	GGWCC	2 cut(s)	476, 832
BmgT120I	GGNCC	2 cut(s)	476, 832
BmiI	GGNNCC	3 cut(s)	833, 976, 995
BmrFI	CCNGG	2 cut(s)	363, 836
BmsI	GCATC	2 cut(s)	84, 121
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	2 cut(s)	884, 1066
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	983
BsaBI	GATNNNNATC	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	6, 362, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 755, 853
Bse1I	ACTGG	2 cut(s)	565, 817
Bse3DI	GCAATG	2 cut(s)	627, 864
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	363, 836
BseDI	CCNNGG	3 cut(s)	6, 362, 851
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	298, 755, 853
BseMI	GCAATG	2 cut(s)	627, 864
BseMII	CTCAG	5 cut(s)	137, 198, 408, 494, 996
BseNI	ACTGG	2 cut(s)	565, 817
BseSI	GKGCMC	2 cut(s)	370, 876
BseXI	GCAGC	5 cut(s)	604, 626, 709, 960, 1028
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	5, 116
BsiHKAI	GWGCWC	1 cut(s)	876
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	298, 755, 853
BsmAI	GTCTC	2 cut(s)	19, 169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	5, 116
Bso31I	GGTCTC	1 cut(s)	19
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	370, 876
Bsp143I	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	11, 284, 345
BspANI	GGCC	2 cut(s)	5, 116
BspCNI	CTCAG	5 cut(s)	136, 199, 407, 493, 997
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	833, 976, 995
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	3 cut(s)	80, 274, 643
BspQI	GCTCTTC	1 cut(s)	951
BspT104I	TTCGAA	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	627, 864
BsrI	ACTGG	2 cut(s)	565, 817
BssECI	CCNNGG	3 cut(s)	6, 362, 851
BssMI	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	363, 836
Bst4CI	ACNGT	2 cut(s)	372, 935
Bst6I	CTCTTC	3 cut(s)	172, 951, 1053
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	6 cut(s)	123, 207, 394, 480, 523, 1005
BstDSI	CCRYGG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	1012
BstHHI	GCGC	1 cut(s)	1011
BstKTI	GATC	9 cut(s)	88, 110, 184, 243, 282, 329, 651, 796, 1028
BstMAI	GTCTC	2 cut(s)	19, 169
BstMBI	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 875, 884, 945
BstNI	CCWGG	2 cut(s)	363, 836
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	361, 834
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	2 cut(s)	370, 876
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	5 cut(s)	604, 626, 709, 960, 1028
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	326, 648
BstYI	RGATCY	2 cut(s)	326, 648
BsuI	GTATCC	2 cut(s)	650, 923
BsuRI	GGCC	2 cut(s)	5, 116
BtgI	CCRYGG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	921
Cac8I	GCNNGC	1 cut(s)	876
CaiI	CAGNNNCTG	1 cut(s)	662
CfoI	GCGC	1 cut(s)	1011
Cfr13I	GGNCC	2 cut(s)	476, 832
Csp6I	GTAC	2 cut(s)	232, 337
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	6 cut(s)	7, 185, 491, 556, 703, 740
CviQI	GTAC	2 cut(s)	232, 337
DdeI	CTNAG	6 cut(s)	123, 207, 394, 480, 523, 1005
DpnI	GATC	9 cut(s)	87, 109, 183, 242, 281, 328, 650, 795, 1027
DpnII	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
EaeI	YGGCCR	2 cut(s)	3, 114
Eam1104I	CTCTTC	3 cut(s)	172, 951, 1053
EarI	CTCTTC	3 cut(s)	172, 951, 1053
Eco130I	CCWWGG	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	476, 832
Eco47III	AGCGCT	1 cut(s)	1010
Eco57I	CTGAAG	3 cut(s)	111, 314, 897
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	706
EcoRII	CCWGG	2 cut(s)	361, 834
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	6 cut(s)	10, 188, 494, 559, 706, 743
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	6 cut(s)	6, 184, 490, 555, 702, 739
FauI	CCCGC	2 cut(s)	291, 338
FbaI	TGATCA	2 cut(s)	181, 240
FblI	GTMKAC	1 cut(s)	984
Fnu4HI	GCNGC	5 cut(s)	615, 618, 723, 949, 1042
Fsp4HI	GCNGC	5 cut(s)	615, 618, 723, 949, 1042
FspBI	CTAG	3 cut(s)	50, 545, 1023
GlaI	GCGC	1 cut(s)	1010
GluI	GCNGC	5 cut(s)	615, 618, 723, 949, 1042
GsuI	CTGGAG	2 cut(s)	884, 1066
HaeII	RGCGCY	1 cut(s)	1012
HaeIII	GGCC	2 cut(s)	5, 116
HhaI	GCGC	1 cut(s)	1011
Hin1II	CATG	6 cut(s)	10, 188, 494, 559, 706, 743
Hin6I	GCGC	1 cut(s)	1009
HinP1I	GCGC	1 cut(s)	1009
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	2 cut(s)	431, 520
HinfI	GANTC	5 cut(s)	191, 209, 512, 632, 659
Hpy166II	GTNNAC	6 cut(s)	190, 339, 529, 538, 874, 985
Hpy188I	TCNGA	8 cut(s)	126, 208, 397, 472, 483, 644, 664, 798
Hpy188III	TCNNGA	8 cut(s)	89, 140, 292, 441, 516, 545, 656, 1000
Hpy8I	GTNNAC	6 cut(s)	190, 339, 529, 538, 874, 985
HpyAV	CCTTC	8 cut(s)	26, 86, 90, 146, 571, 662, 710, 919
HpyCH4III	ACNGT	2 cut(s)	372, 935
HpyCH4V	TGCA	8 cut(s)	20, 156, 555, 614, 620, 725, 770, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 875, 884, 945
HpyF3I	CTNAG	6 cut(s)	123, 207, 394, 480, 523, 1005
Hsp92II	CATG	6 cut(s)	10, 188, 494, 559, 706, 743
HspAI	GCGC	1 cut(s)	1009
Ksp22I	TGATCA	2 cut(s)	181, 240
Kzo9I	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	2 cut(s)	276, 719
Lsp1109I	GCAGC	5 cut(s)	604, 626, 709, 960, 1028
LweI	GCATC	2 cut(s)	84, 121
MaeI	CTAG	3 cut(s)	50, 545, 1023
MaeIII	GTNAC	3 cut(s)	386, 742, 894
MalI	GATC	9 cut(s)	87, 109, 183, 242, 281, 328, 650, 795, 1027
MboI	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
MboII	GAAGA	8 cut(s)	70, 95, 159, 764, 903, 968, 1067, 1070
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	2 cut(s)	326, 648
MhlI	GDGCHC	2 cut(s)	370, 876
MlsI	TGGCCA	2 cut(s)	5, 116
MluCI	AATT	3 cut(s)	21, 706, 726
MluNI	TGGCCA	2 cut(s)	5, 116
MlyI	GAGTC	2 cut(s)	185, 218
MmeI	TCCRAC	1 cut(s)	871
Mox20I	TGGCCA	2 cut(s)	5, 116
MscI	TGGCCA	2 cut(s)	5, 116
MseI	TTAA	2 cut(s)	1035, 1072
MslI	CAYNNNNRTG	2 cut(s)	869, 879
Msp20I	TGGCCA	2 cut(s)	5, 116
MspA1I	CMGCKG	2 cut(s)	617, 785
MspR9I	CCNGG	2 cut(s)	363, 836
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	363, 836
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	17, 875, 884, 945
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
NlaIII	CATG	6 cut(s)	10, 188, 494, 559, 706, 743
NlaIV	GGNNCC	3 cut(s)	833, 976, 995
NmuCI	GTSAC	1 cut(s)	894
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	951
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	512, 632, 659
PkrI	GCNGC	5 cut(s)	616, 619, 724, 950, 1043
PleI	GAGTC	2 cut(s)	185, 217
PpsI	GAGTC	2 cut(s)	185, 217
PpuMI	RGGWCCY	1 cut(s)	832
Psp5II	RGGWCCY	1 cut(s)	832
Psp6I	CCWGG	2 cut(s)	361, 834
PspGI	CCWGG	2 cut(s)	361, 834
PspN4I	GGNNCC	3 cut(s)	833, 976, 995
PspPI	GGNCC	2 cut(s)	476, 832
PspPPI	RGGWCCY	1 cut(s)	832
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	326, 648
PvuII	CAGCTG	2 cut(s)	617, 785
RsaI	GTAC	2 cut(s)	233, 338
RsaNI	GTAC	2 cut(s)	232, 337
RseI	CAYNNNNRTG	2 cut(s)	869, 879
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	2 cut(s)	1035, 1072
SatI	GCNGC	5 cut(s)	615, 618, 723, 949, 1042
Sau3AI	GATC	9 cut(s)	85, 107, 181, 240, 279, 326, 648, 793, 1025
Sau96I	GGNCC	2 cut(s)	476, 832
SchI	GAGTC	2 cut(s)	185, 218
ScrFI	CCNGG	2 cut(s)	363, 836
SduI	GDGCHC	2 cut(s)	370, 876
SfaNI	GCATC	2 cut(s)	84, 121
SfcI	CTRYAG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	2 cut(s)	476, 832
SmiMI	CAYNNNNRTG	2 cut(s)	869, 879
SmlI	CTYRAG	1 cut(s)	998
SmoI	CTYRAG	1 cut(s)	998
Sse9I	AATT	3 cut(s)	21, 706, 726
SsiI	CCGC	3 cut(s)	11, 284, 345
SspMI	CTAG	3 cut(s)	50, 545, 1023
StyD4I	CCNGG	2 cut(s)	361, 834
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	372, 935
TaqI	TCGA	3 cut(s)	39, 106, 678
TaqII	GACCGA	1 cut(s)	456
TasI	AATT	3 cut(s)	21, 706, 726
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	512, 632, 659
Tru1I	TTAA	2 cut(s)	1035, 1072
Tru9I	TTAA	2 cut(s)	1035, 1072
TscAI	CASTG	1 cut(s)	921
TseFI	GTSAC	1 cut(s)	894
TseI	GCWGC	5 cut(s)	614, 617, 722, 948, 1041
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	5 cut(s)	159, 343, 719, 728, 1068
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	921
VneI	GTGCAC	1 cut(s)	872
VpaK11BI	GGWCC	2 cut(s)	476, 832
XapI	RAATTY	1 cut(s)	706
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	984
XspI	CTAG	3 cut(s)	50, 545, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.