Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Reverse (-)

9853828 .. 9856212

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGGTTGATGAAAATGTGGAAACCAAGGCCTCTACTTTAGTGGCAAGTGTTGATCATGGGTTTGGATCCGGGTCGGGTCATGATCATCATGGGTTATCGGCGTCTGTGCCTCTTCTTGGTGTTAACTGGAAGAAGAGAAGGATGCCTAGACAGAGACGATCTTCTTCTTCCTTTAACCTTCTCTCTTTCCCTCCTCCTATGCCTCCTATTTCCCACGTGCCAACTCCTCTCCCCGCACGTAAAATTGACCCAAGAAAGCTAAGATTCCTCTTCCAAAAGGAACTCAAGAACAGTGACGTCAGCTCTCTCCGACGTATGATACTCCCGAAGAAAGCCGCGGAGGCTCACTTGCCGGCACTTGAATGCAAGGAAGGGATTCCTATAAGAATGGAAGATTTGGACGGTTTTCACGTTTGGACCTTCAAGTATAGGTACTGGCCAAACAACAATAGCAGAATGTACGTGCTAGAAAACACAGGCGATTTTGTGAATGCTCATGGTCTGCAGCTAGGTGACTTCATCATGGTTTACCAAGATCTCTACTCAAACAATTACGTTATACAAGCAAGAAAAGCATCGGAAGAAGAAGAAGTAGACGTAATCAATCTTGAAGAAGACGACGTTTACACAAACTTAACAAGGATCGAAAACACTGTGGTTAACGATCTTCTCCTCCAAGATTTTAATCATCACAACAACAACAACAACAACAACAGCAACAGCAACAGCAACAAATGTTCTTACTATTATCCAGTCATAGATGATGTCACCACAAACACAGAGTCTTTTGTCTACGACACGACGGCTCTTACCTCCAACGATACTCCTCTCGATTTTTTGGGTGGACATACGACGACTACTAATAATTATTACTCCAAGTTCGGAACATTCGATGGTTTGGGCTCCGTTGAGAATATCTCTCTCGATGACTTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

313

Amino Acids

35.62

Weight (kDa)

5.44

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	92 - 192	4.7e-17	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	303
AccI	GTMKAC	2 cut(s)	597, 795
AccII	CGCG	1 cut(s)	341
AciI	CCGC	3 cut(s)	237, 339, 341
AclWI	GGATC	3 cut(s)	63, 76, 653
AcoI	YGGCCR	1 cut(s)	440
AcvI	CACGTG	1 cut(s)	220
AcyI	GRCGYC	2 cut(s)	104, 300
AfaI	GTAC	2 cut(s)	437, 464
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	365, 427, 614
AluBI	AGCT	3 cut(s)	262, 306, 511
AluI	AGCT	3 cut(s)	262, 306, 511
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	3 cut(s)	63, 76, 653
AoxI	GGCC	2 cut(s)	30, 440
ApeKI	GCWGC	1 cut(s)	508
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	527, 763
AvaII	GGWCC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	908
BbrPI	CACGTG	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	890
BceAI	ACGGC	1 cut(s)	822
BclI	TGATCA	2 cut(s)	55, 85
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	4 cut(s)	150, 470, 512, 940
BfmI	CTRYAG	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	2 cut(s)	339, 509
BlsI	GCNGC	2 cut(s)	340, 510
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	420
BmiI	GGNNCC	2 cut(s)	70, 907
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	135, 587
BpiI	GAAGAC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	73
BsaAI	YACGTR	3 cut(s)	220, 242, 466
BsaBI	GATNNNNATC	1 cut(s)	687
BsaHI	GRCGYC	2 cut(s)	104, 300
BsaJI	CCNNGG	2 cut(s)	27, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	3 cut(s)	134, 443, 755
Bse8I	GATNNNNATC	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	27, 339
BseGI	GGATG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseNI	ACTGG	3 cut(s)	134, 443, 755
BseRI	GAGGAG	4 cut(s)	186, 219, 665, 819
BseXI	GCAGC	1 cut(s)	520
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	32, 442
BsiSI	CCGG	2 cut(s)	72, 356
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	151
BsmBI	CGTCTC	1 cut(s)	151
BsmI	GAATGC	2 cut(s)	371, 499
BsnI	GGCC	2 cut(s)	32, 442
Bsp1286I	GDGCHC	1 cut(s)	908
Bsp143I	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
BspACI	CCGC	3 cut(s)	237, 339, 341
BspANI	GGCC	2 cut(s)	32, 442
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	70, 907
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	3 cut(s)	63, 76, 653
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	134, 443, 755
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	27, 339
BssMI	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
BssNI	GRCGYC	2 cut(s)	104, 300
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	296, 407, 658
Bst6I	CTCTTC	3 cut(s)	120, 131, 278
BstACI	GRCGYC	2 cut(s)	104, 300
BstBAI	YACGTR	3 cut(s)	220, 242, 466
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	341
BstKTI	GATC	7 cut(s)	58, 71, 88, 164, 541, 648, 670
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 575
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	506
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	2 cut(s)	68, 538
BstYI	RGATCY	2 cut(s)	68, 538
BsuRI	GGCC	2 cut(s)	32, 442
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	301, 654
Cac8I	GCNNGC	1 cut(s)	357
CciI	TCATGA	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	420
Cfr42I	CCGCGG	1 cut(s)	342
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	436, 463
CviAII	CATG	5 cut(s)	59, 83, 92, 500, 526
CviJI	RGCY	9 cut(s)	32, 262, 306, 338, 347, 442, 511, 809, 906
CviKI_1	RGCY	9 cut(s)	32, 262, 306, 338, 347, 442, 511, 809, 906
CviQI	GTAC	2 cut(s)	436, 463
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	7 cut(s)	57, 70, 87, 163, 540, 647, 669
DpnII	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	3 cut(s)	120, 131, 278
EarI	CTCTTC	3 cut(s)	120, 131, 278
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	908
Eco47I	GGWCC	1 cut(s)	420
Eco72I	CACGTG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	908
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	5 cut(s)	62, 86, 95, 503, 529
FatI	CATG	5 cut(s)	58, 82, 91, 499, 525
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	2 cut(s)	55, 85
FblI	GTMKAC	2 cut(s)	597, 795
Fnu4HI	GCNGC	2 cut(s)	339, 509
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	908
Fsp4HI	GCNGC	2 cut(s)	339, 509
FspBI	CTAG	4 cut(s)	150, 470, 512, 940
GluI	GCNGC	2 cut(s)	339, 509
HaeIII	GGCC	2 cut(s)	32, 442
HapII	CCGG	2 cut(s)	72, 356
HgaI	GACGC	1 cut(s)	93
Hin1I	GRCGYC	2 cut(s)	104, 300
Hin1II	CATG	5 cut(s)	62, 86, 95, 503, 529
HincII	GTYRAC	2 cut(s)	127, 664
HindII	GTYRAC	2 cut(s)	127, 664
HinfI	GANTC	3 cut(s)	267, 379, 785
HpaI	GTTAAC	2 cut(s)	127, 664
HpaII	CCGG	2 cut(s)	72, 356
HphI	GGTGA	2 cut(s)	527, 763
Hpy166II	GTNNAC	7 cut(s)	127, 532, 598, 628, 664, 796, 848
Hpy188I	TCNGA	3 cut(s)	314, 583, 887
Hpy188III	TCNNGA	6 cut(s)	83, 289, 328, 611, 833, 926
Hpy8I	GTNNAC	7 cut(s)	127, 532, 598, 628, 664, 796, 848
Hpy99I	CGWCG	4 cut(s)	318, 626, 808, 859
HpyAV	CCTTC	4 cut(s)	135, 191, 368, 433
HpyCH4III	ACNGT	3 cut(s)	296, 407, 658
HpyCH4IV	ACGT	9 cut(s)	219, 241, 300, 316, 414, 465, 558, 600, 624
HpyCH4V	TGCA	2 cut(s)	369, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 575
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	9 cut(s)	219, 241, 300, 316, 414, 465, 558, 600, 624
Hsp92I	GRCGYC	2 cut(s)	104, 300
Hsp92II	CATG	5 cut(s)	62, 86, 95, 503, 529
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Ksp22I	TGATCA	2 cut(s)	55, 85
KspAI	GTTAAC	2 cut(s)	127, 664
KspI	CCGCGG	1 cut(s)	342
Kzo9I	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
LmnI	GCTCC	1 cut(s)	911
LpnPI	CCDG	6 cut(s)	85, 115, 369, 424, 465, 768
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	135, 587
MaeI	CTAG	4 cut(s)	150, 470, 512, 940
MaeII	ACGT	9 cut(s)	219, 241, 300, 316, 414, 465, 558, 600, 624
MaeIII	GTNAC	3 cut(s)	296, 515, 769
MalI	GATC	7 cut(s)	57, 70, 87, 163, 540, 647, 669
MboI	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
MflI	RGATCY	2 cut(s)	68, 538
MhlI	GDGCHC	1 cut(s)	908
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	3 cut(s)	246, 553, 868
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	2 cut(s)	337, 843
Mox20I	TGGCCA	1 cut(s)	442
MroNI	GCCGGC	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	5 cut(s)	126, 177, 638, 663, 687
MslI	CAYNNNNRTG	1 cut(s)	364
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	72, 356
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	2 cut(s)	371, 499
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	344, 575
NaeI	GCCGGC	1 cut(s)	357
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
NgoMIV	GCCGGC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	62, 86, 95, 503, 529
NlaIV	GGNNCC	2 cut(s)	70, 907
NmuCI	GTSAC	3 cut(s)	296, 515, 769
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 891
PctI	GAATGC	2 cut(s)	371, 499
PdiI	GCCGGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	267, 379
PkrI	GCNGC	2 cut(s)	340, 510
PleI	GAGTC	1 cut(s)	793
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	793
Ppu21I	YACGTR	3 cut(s)	220, 242, 466
PspCI	CACGTG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	70, 907
PspPI	GGNCC	1 cut(s)	420
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	68, 538
RsaI	GTAC	2 cut(s)	437, 464
RsaNI	GTAC	2 cut(s)	436, 463
RseI	CAYNNNNRTG	1 cut(s)	364
SacII	CCGCGG	1 cut(s)	342
SaqAI	TTAA	5 cut(s)	126, 177, 638, 663, 687
SatI	GCNGC	2 cut(s)	339, 509
Sau3AI	GATC	7 cut(s)	55, 68, 85, 161, 538, 645, 667
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	908
SfaNI	GCATC	2 cut(s)	135, 587
SfcI	CTRYAG	1 cut(s)	506
Sfr303I	CCGCGG	1 cut(s)	342
SgrBI	CCGCGG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	246, 553, 868
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	3 cut(s)	237, 339, 341
SspMI	CTAG	4 cut(s)	150, 470, 512, 940
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	296, 407, 658
TaiI	ACGT	9 cut(s)	222, 244, 303, 319, 417, 468, 561, 603, 627
TaqI	TCGA	4 cut(s)	648, 834, 894, 927
TasI	AATT	3 cut(s)	246, 553, 868
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	267, 379
Tru1I	TTAA	5 cut(s)	126, 177, 638, 663, 687
Tru9I	TTAA	5 cut(s)	126, 177, 638, 663, 687
TscAI	CASTG	2 cut(s)	301, 661
TseFI	GTSAC	3 cut(s)	296, 515, 769
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	3 cut(s)	296, 515, 769
TspDTI	ATGAA	2 cut(s)	27, 511
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	2 cut(s)	301, 661
VpaK11BI	GGWCC	1 cut(s)	420
XmiI	GTMKAC	2 cut(s)	597, 795
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	4 cut(s)	150, 470, 512, 940
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.