Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Forward (+)

81607335 .. 81611197

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG646100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGATGATGGACCAAACCCACGCCGCCCTTCACAGCAAAACCGAGGCCTTTGCCTTGAGGGCAGGTGTTAACGAGCTCGGCTTTCTCACTCGTCATGATGATCAGGAGGTTGACAACAACAACAGCAACAAGAAGCACGACAACAACGTCAACTCCTTGCAAGGGTCGGATCGTCCCGGGTCGATCCGTGACCTTGTTCGTGCCGTCTCAACTTTTGGTGTGCAGAGGAAGAAACGGATGATGAGGCAGAGGCGAGCCACCACCATCAACTTTCAGCTCTCTTTTGCCACCCCCAGCTCTCACGTGCTCCCTTCCACTTCCCCACCTGCACGTGTAACTGATCCTGCAAGGTTGAGATTTCTTTTCCAAAAGGAACTTAAGAACAGTGATGTGAGCACTCTCAGAAGGGTGGTACTCCCTAAGAAAGCAGCTGAGGCTCATCTCCCAGCCCTGGAGTCTAAGGAAGGGATTTCTATCAGCATGGATGACATAGATGGTCTGCATGTTTGGAGCTTTAAGTACAGATTTTGGCCTAACAACAACAGCCGCATGTATGTGCTCGAGAATACTGGGGAATTCGTTAGCACACATGGCTTGCAACTTGGAGATTTCATCATGGTTTATCAAGATAGTGCAAACCACAATTATGTCATTCAGGCTAAAAAGGCCAACTCTGACCAAGATGATGATGATGAAGGTGAAACTGTATATGGAGTGGAAGAAACTATGAACAATGCTGTGAATGAGCTCATGATTTATGACTCGGTGCCTGATCAGGCTAACAAGTCTAGCTCGTTTTACATGCCGACAATGGATCATGATCATATGCAGGATGTTAATGCAGGCATGTCATTTGTGTATGACACCACTGCCTTCTCAAACGACTCTCTCCTTGATTTTTTGGGTGGATCCATGACCAACTATTCCAGATCAAATGGACGTCTGCAGGAAAATTTTGGGTCTGTTGAGAACCTGTCTCTTGATGACTTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

331

Amino Acids

37.39

Weight (kDa)

5.36

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	122 - 219	1.4e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	53, 334
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	943
Acc36I	ACCTGC	2 cut(s)	53, 334
AccB1I	GGYRCC	1 cut(s)	766
AciI	CCGC	2 cut(s)	24, 547
AclWI	GGATC	6 cut(s)	177, 178, 335, 822, 903, 916
AcsI	RAATTY	2 cut(s)	575, 952
AcvI	CACGTG	2 cut(s)	304, 332
AcyI	GRCGYC	1 cut(s)	940
AfaI	GTAC	2 cut(s)	414, 521
AfiI	CCNNNNNNNGG	2 cut(s)	162, 451
AflII	CTTAAG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	7 cut(s)	76, 277, 297, 431, 513, 748, 792
AluI	AGCT	7 cut(s)	76, 277, 297, 431, 513, 748, 792
Alw21I	GWGCWC	5 cut(s)	78, 309, 398, 561, 750
Alw26I	GTCTC	2 cut(s)	211, 981
AlwI	GGATC	6 cut(s)	177, 178, 335, 822, 903, 916
Ama87I	CYCGRG	2 cut(s)	176, 560
AoxI	GGCC	3 cut(s)	45, 530, 666
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	575, 952
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	2 cut(s)	177, 178
AsuHPI	GGTGA	1 cut(s)	710
AvaI	CYCGRG	2 cut(s)	176, 560
AvaII	GGWCC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	908
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	2 cut(s)	78, 750
BbrPI	CACGTG	2 cut(s)	304, 332
Bbv12I	GWGCWC	5 cut(s)	78, 309, 398, 561, 750
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	272, 488
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	3 cut(s)	100, 772, 820
BcnI	CCSGG	2 cut(s)	177, 178
BcoDI	GTCTC	2 cut(s)	211, 981
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	944
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	2 cut(s)	53, 334
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	24, 429, 547
BlsI	GCNGC	3 cut(s)	25, 430, 548
Bme1390I	CCNGG	3 cut(s)	177, 178, 452
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	2 cut(s)	176, 560
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	768, 910
BmrFI	CCNGG	3 cut(s)	177, 178, 452
BmrI	ACTGGG	1 cut(s)	579
BmuI	ACTGGG	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	2 cut(s)	177, 178
BsaAI	YACGTR	2 cut(s)	304, 332
BsaBI	GATNNNNATC	2 cut(s)	473, 819
BsaHI	GRCGYC	1 cut(s)	940
BsaJI	CCNNGG	3 cut(s)	42, 176, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 451
Bse1I	ACTGG	1 cut(s)	574
Bse8I	GATNNNNATC	2 cut(s)	473, 819
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	42, 176, 450
BseGI	GGATG	3 cut(s)	243, 490, 838
BseJI	GATNNNNATC	2 cut(s)	473, 819
BseLI	CCNNNNNNNGG	2 cut(s)	162, 451
BseMII	CTCAG	2 cut(s)	415, 423
BseNI	ACTGG	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	440
BseYI	CCCAGC	2 cut(s)	293, 445
BsgI	GTGCAG	2 cut(s)	242, 312
BshFI	GGCC	3 cut(s)	47, 532, 668
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	5 cut(s)	78, 309, 398, 561, 750
BsiHKCI	CYCGRG	2 cut(s)	176, 560
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	162, 451
BsmAI	GTCTC	2 cut(s)	211, 981
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	47, 532, 668
BsoBI	CYCGRG	2 cut(s)	176, 560
Bsp1286I	GDGCHC	5 cut(s)	78, 309, 398, 561, 750
Bsp143I	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
BspACI	CCGC	2 cut(s)	24, 547
BspANI	GGCC	3 cut(s)	47, 532, 668
BspCNI	CTCAG	2 cut(s)	414, 424
BspHI	TCATGA	3 cut(s)	94, 750, 817
BspLI	GGNNCC	2 cut(s)	768, 910
BspMAI	CTGCAG	1 cut(s)	948
BspMI	ACCTGC	2 cut(s)	53, 334
BspPI	GGATC	6 cut(s)	177, 178, 335, 822, 903, 916
BspT107I	GGYRCC	1 cut(s)	766
BspTI	CTTAAG	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	42, 176, 450
BssMI	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
BssNI	GRCGYC	1 cut(s)	940
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	386, 706
BstACI	GRCGYC	1 cut(s)	940
BstAFI	CTTAAG	1 cut(s)	377
BstBAI	YACGTR	2 cut(s)	304, 332
BstC8I	GCNNGC	3 cut(s)	255, 596, 844
BstDEI	CTNAG	4 cut(s)	401, 420, 432, 459
BstF5I	GGATG	3 cut(s)	243, 490, 838
BstKTI	GATC	9 cut(s)	103, 172, 186, 343, 775, 817, 823, 911, 932
BstMAI	GTCTC	2 cut(s)	211, 981
BstMBI	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 434, 591, 665
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	4 cut(s)	506, 553, 805, 850
BstSCI	CCNGG	3 cut(s)	175, 176, 450
BstSFI	CTRYAG	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	908
BstYI	RGATCY	1 cut(s)	908
BsuRI	GGCC	3 cut(s)	47, 532, 668
BtsCI	GGATG	3 cut(s)	243, 490, 838
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	2 cut(s)	391, 867
BveI	ACCTGC	2 cut(s)	53, 334
Cac8I	GCNNGC	3 cut(s)	255, 596, 844
CciI	TCATGA	3 cut(s)	94, 750, 817
Cfr13I	GGNCC	1 cut(s)	10
Cfr9I	CCCGGG	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	413, 520
CviQI	GTAC	2 cut(s)	413, 520
DdeI	CTNAG	4 cut(s)	401, 420, 432, 459
DpnI	GATC	9 cut(s)	102, 171, 185, 342, 774, 816, 822, 910, 931
DpnII	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Ecl136II	GAGCTC	2 cut(s)	76, 748
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	78, 750
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	2 cut(s)	76, 748
Eco72I	CACGTG	2 cut(s)	304, 332
Eco88I	CYCGRG	2 cut(s)	176, 560
EcoICRI	GAGCTC	2 cut(s)	76, 748
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	78, 750
Esp3I	CGTCTC	1 cut(s)	211
FaqI	GGGAC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	825
FbaI	TGATCA	3 cut(s)	100, 772, 820
Fnu4HI	GCNGC	3 cut(s)	24, 429, 547
FokI	GGATG	3 cut(s)	250, 497, 845
FriOI	GRGCYC	2 cut(s)	78, 750
Fsp4HI	GCNGC	3 cut(s)	24, 429, 547
FspBI	CTAG	1 cut(s)	789
GluI	GCNGC	3 cut(s)	24, 429, 547
GsaI	CCCAGC	2 cut(s)	297, 449
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	3 cut(s)	47, 532, 668
HapII	CCGG	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	940
HincII	GTYRAC	3 cut(s)	70, 112, 151
HindII	GTYRAC	3 cut(s)	70, 112, 151
HinfI	GANTC	3 cut(s)	455, 761, 884
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	3 cut(s)	70, 112, 151
Hpy188I	TCNGA	3 cut(s)	169, 404, 676
Hpy188III	TCNNGA	8 cut(s)	95, 104, 562, 626, 751, 818, 927, 980
Hpy8I	GTNNAC	3 cut(s)	70, 112, 151
HpyAV	CCTTC	6 cut(s)	38, 321, 399, 458, 689, 883
HpyCH4III	ACNGT	2 cut(s)	386, 706
HpyCH4IV	ACGT	4 cut(s)	147, 303, 331, 940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 434, 591, 665
HpyF3I	CTNAG	4 cut(s)	401, 420, 432, 459
HpySE526I	ACGT	4 cut(s)	147, 303, 331, 940
Hsp92I	GRCGYC	1 cut(s)	940
Ksp22I	TGATCA	3 cut(s)	100, 772, 820
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
LmnI	GCTCC	2 cut(s)	312, 510
Lsp1109I	GCAGC	1 cut(s)	440
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	4 cut(s)	147, 303, 331, 940
MaeIII	GTNAC	2 cut(s)	188, 334
MalI	GATC	9 cut(s)	102, 171, 185, 342, 774, 816, 822, 910, 931
MboI	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
MboII	GAAGA	2 cut(s)	241, 731
MflI	RGATCY	1 cut(s)	908
MhlI	GDGCHC	5 cut(s)	78, 309, 398, 561, 750
MluCI	AATT	3 cut(s)	575, 643, 952
MlyI	GAGTC	3 cut(s)	464, 755, 878
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	37, 51, 100, 219, 237, 243, 427
MseI	TTAA	5 cut(s)	69, 378, 516, 837, 994
MslI	CAYNNNNRTG	2 cut(s)	554, 645
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	177, 178, 452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	4 cut(s)	59, 434, 591, 665
NciI	CCSGG	2 cut(s)	177, 178
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
NlaIV	GGNNCC	2 cut(s)	768, 910
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	4 cut(s)	506, 553, 805, 850
PaeR7I	CTCGAG	1 cut(s)	560
PagI	TCATGA	3 cut(s)	94, 750, 817
PaqCI	CACCTGC	2 cut(s)	53, 334
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	25, 430, 548
PleI	GAGTC	3 cut(s)	463, 755, 878
PmaCI	CACGTG	2 cut(s)	304, 332
PmlI	CACGTG	2 cut(s)	304, 332
PpsI	GAGTC	3 cut(s)	463, 755, 878
Ppu21I	YACGTR	2 cut(s)	304, 332
Psp124BI	GAGCTC	2 cut(s)	78, 750
Psp6I	CCWGG	1 cut(s)	450
PspCI	CACGTG	2 cut(s)	304, 332
PspFI	CCCAGC	2 cut(s)	293, 445
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	768, 910
PspPI	GGNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	948
PsuI	RGATCY	1 cut(s)	908
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	414, 521
RsaNI	GTAC	2 cut(s)	413, 520
RseI	CAYNNNNRTG	2 cut(s)	554, 645
SacI	GAGCTC	2 cut(s)	78, 750
SaqAI	TTAA	5 cut(s)	69, 378, 516, 837, 994
SatI	GCNGC	3 cut(s)	24, 429, 547
Sau3AI	GATC	9 cut(s)	100, 169, 183, 340, 772, 814, 820, 908, 929
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	3 cut(s)	464, 755, 878
ScrFI	CCNGG	3 cut(s)	177, 178, 452
SduI	GDGCHC	5 cut(s)	78, 309, 398, 561, 750
SfcI	CTRYAG	1 cut(s)	944
Sfr274I	CTCGAG	1 cut(s)	560
SinI	GGWCC	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	560
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	554, 645
SmlI	CTYRAG	3 cut(s)	55, 377, 560
SmoI	CTYRAG	3 cut(s)	55, 377, 560
Sse9I	AATT	3 cut(s)	575, 643, 952
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	24, 547
SspMI	CTAG	1 cut(s)	789
SstI	GAGCTC	2 cut(s)	78, 750
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	175, 176, 450
TaaI	ACNGT	2 cut(s)	386, 706
TaiI	ACGT	4 cut(s)	150, 306, 334, 943
TaqI	TCGA	2 cut(s)	182, 561
TasI	AATT	3 cut(s)	575, 643, 952
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	2 cut(s)	26, 549
Tru1I	TTAA	5 cut(s)	69, 378, 516, 837, 994
Tru9I	TTAA	5 cut(s)	69, 378, 516, 837, 994
TscAI	CASTG	2 cut(s)	391, 874
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	601, 708, 743
TspGWI	ACGGA	2 cut(s)	176, 250
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	2 cut(s)	391, 874
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	2 cut(s)	575, 952
XceI	RCATGY	4 cut(s)	506, 553, 805, 850
XhoI	CTCGAG	1 cut(s)	560
XmaI	CCCGGG	1 cut(s)	176
XspI	CTAG	1 cut(s)	789
ZraI	GACGTC	1 cut(s)	941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.