Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027060.1

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Forward (+)

12577 .. 15626

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027060.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgatgatggaccaaacccacgccgcccttcacagcaaaaccgaggcctttgccttgagggcaggtgttaacgagctcggctttctcactcgtcatgatgatcaggaggttgacaacaacaacagcaacaagaagcacgacaacaacgtcaactcctttcaagggtcggatcgtcccgggtcgatccgtgaccttgttcgtgccgtctcaacttttggtgtgcagaggaagaaacggatgatgaggcagaggcgagccaccaccatcaactttcagctctcttttgccacccccagctctcacgtgctcccttccacttccccacctgcacgtgtaactgatcctgcaaggttgagatttcttttccaaaaggaacttaagaacagtgatgtgagcactctcagaagggtggtactccctaagaaagcagctgaggctcatctcccagccctggagtctaaggaagggatttctatcagcatggatgacatagatggggaattcgttagcacacatggcttgcaacttggagatttcatcatggtttatcaagatagtgcaaaccacaattatgtcattcaggctaaaaaggccaactctgtccaagatgatgatgaagaagatgaaactgtatatggagtggaagaaactatgaacaatgctgtgaatgagctcatgatttatgactcggtccctgatcaggctaacaagtctagctcgttttacatgccgacaatggatcatgatcatatgcaggatgttaatgcaggcatgtcatttgtgtatgacaccactgccttctcaaacgactctctccttgattttttgggtggatccatgaccaactattccagatcaaatggacgtctgcaggaaaattttgggtctgttgagaacctgtctcttgatgacttctattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

306

Amino Acids

34.34

Weight (kDa)

5.11

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	53, 334
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	868
Acc36I	ACCTGC	2 cut(s)	53, 334
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	6 cut(s)	177, 178, 335, 747, 828, 841
AcsI	RAATTY	2 cut(s)	500, 877
AcvI	CACGTG	2 cut(s)	304, 332
AcyI	GRCGYC	1 cut(s)	865
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	162, 451, 700
AflII	CTTAAG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	6 cut(s)	76, 277, 297, 431, 673, 717
AluI	AGCT	6 cut(s)	76, 277, 297, 431, 673, 717
Alw21I	GWGCWC	4 cut(s)	78, 309, 398, 675
Alw26I	GTCTC	2 cut(s)	211, 906
AlwI	GGATC	6 cut(s)	177, 178, 335, 747, 828, 841
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	45, 591
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	500, 877
AspS9I	GGNCC	2 cut(s)	10, 691
AsuC2I	CCSGG	2 cut(s)	177, 178
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	10, 691
BamHI	GGATCC	1 cut(s)	833
BanII	GRGCYC	2 cut(s)	78, 675
BbrPI	CACGTG	2 cut(s)	304, 332
Bbv12I	GWGCWC	4 cut(s)	78, 309, 398, 675
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	272, 488
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	3 cut(s)	100, 697, 745
BcnI	CCSGG	2 cut(s)	177, 178
BcoDI	GTCTC	2 cut(s)	211, 906
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	869
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	2 cut(s)	53, 334
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	24, 429
BlsI	GCNGC	2 cut(s)	25, 430
Bme1390I	CCNGG	3 cut(s)	177, 178, 452
Bme18I	GGWCC	2 cut(s)	10, 691
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	10, 691
BmiI	GGNNCC	2 cut(s)	693, 835
BmrFI	CCNGG	3 cut(s)	177, 178, 452
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	2 cut(s)	177, 178
BsaAI	YACGTR	2 cut(s)	304, 332
BsaBI	GATNNNNATC	2 cut(s)	473, 744
BsaHI	GRCGYC	1 cut(s)	865
BsaJI	CCNNGG	3 cut(s)	42, 176, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 451, 700
Bse8I	GATNNNNATC	2 cut(s)	473, 744
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	42, 176, 450
BseGI	GGATG	3 cut(s)	243, 490, 763
BseJI	GATNNNNATC	2 cut(s)	473, 744
BseLI	CCNNNNNNNGG	3 cut(s)	162, 451, 700
BseMII	CTCAG	2 cut(s)	415, 423
BseXI	GCAGC	1 cut(s)	440
BseYI	CCCAGC	2 cut(s)	293, 445
BsgI	GTGCAG	2 cut(s)	242, 312
BshFI	GGCC	2 cut(s)	47, 593
BsiHKAI	GWGCWC	4 cut(s)	78, 309, 398, 675
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	159, 677
BslI	CCNNNNNNNGG	3 cut(s)	162, 451, 700
BsmAI	GTCTC	2 cut(s)	211, 906
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	159, 677
BsnI	GGCC	2 cut(s)	47, 593
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	4 cut(s)	78, 309, 398, 675
Bsp143I	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	47, 593
BspCNI	CTCAG	2 cut(s)	414, 424
BspHI	TCATGA	3 cut(s)	94, 675, 742
BspLI	GGNNCC	2 cut(s)	693, 835
BspMAI	CTGCAG	1 cut(s)	873
BspMI	ACCTGC	2 cut(s)	53, 334
BspPI	GGATC	6 cut(s)	177, 178, 335, 747, 828, 841
BspTI	CTTAAG	1 cut(s)	377
BssECI	CCNNGG	3 cut(s)	42, 176, 450
BssMI	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
BssNI	GRCGYC	1 cut(s)	865
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	386, 631
BstACI	GRCGYC	1 cut(s)	865
BstAFI	CTTAAG	1 cut(s)	377
BstBAI	YACGTR	2 cut(s)	304, 332
BstC8I	GCNNGC	3 cut(s)	255, 521, 769
BstDEI	CTNAG	4 cut(s)	401, 420, 432, 459
BstF5I	GGATG	3 cut(s)	243, 490, 763
BstKTI	GATC	9 cut(s)	103, 172, 186, 343, 700, 742, 748, 836, 857
BstMAI	GTCTC	2 cut(s)	211, 906
BstMBI	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 434, 516, 590
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	2 cut(s)	730, 775
BstSCI	CCNGG	3 cut(s)	175, 176, 450
BstSFI	CTRYAG	1 cut(s)	869
BstV1I	GCAGC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
BsuRI	GGCC	2 cut(s)	47, 593
BtsCI	GGATG	3 cut(s)	243, 490, 763
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	391, 792
BveI	ACCTGC	2 cut(s)	53, 334
Cac8I	GCNNGC	3 cut(s)	255, 521, 769
CciI	TCATGA	3 cut(s)	94, 675, 742
Cfr13I	GGNCC	2 cut(s)	10, 691
Cfr9I	CCCGGG	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	9 cut(s)	95, 481, 515, 541, 676, 727, 743, 772, 838
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	401, 420, 432, 459
DpnI	GATC	9 cut(s)	102, 171, 185, 342, 699, 741, 747, 835, 856
DpnII	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Ecl136II	GAGCTC	2 cut(s)	76, 673
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	78, 675
Eco47I	GGWCC	2 cut(s)	10, 691
Eco53kI	GAGCTC	2 cut(s)	76, 673
Eco72I	CACGTG	2 cut(s)	304, 332
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	2 cut(s)	76, 673
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	78, 675
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	9 cut(s)	98, 484, 518, 544, 679, 730, 746, 775, 841
FaqI	GGGAC	2 cut(s)	159, 677
FatI	CATG	9 cut(s)	94, 480, 514, 540, 675, 726, 742, 771, 837
FauNDI	CATATG	1 cut(s)	750
FbaI	TGATCA	3 cut(s)	100, 697, 745
Fnu4HI	GCNGC	2 cut(s)	24, 429
FokI	GGATG	3 cut(s)	250, 497, 770
FriOI	GRGCYC	2 cut(s)	78, 675
Fsp4HI	GCNGC	2 cut(s)	24, 429
FspBI	CTAG	1 cut(s)	714
GluI	GCNGC	2 cut(s)	24, 429
GsaI	CCCAGC	2 cut(s)	297, 449
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	47, 593
HapII	CCGG	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	865
Hin1II	CATG	9 cut(s)	98, 484, 518, 544, 679, 730, 746, 775, 841
HincII	GTYRAC	3 cut(s)	70, 112, 151
HindII	GTYRAC	3 cut(s)	70, 112, 151
HinfI	GANTC	3 cut(s)	455, 686, 809
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	3 cut(s)	70, 112, 151
Hpy188I	TCNGA	2 cut(s)	169, 404
Hpy188III	TCNNGA	7 cut(s)	95, 104, 551, 676, 743, 852, 905
Hpy8I	GTNNAC	3 cut(s)	70, 112, 151
HpyAV	CCTTC	5 cut(s)	38, 321, 399, 458, 808
HpyCH4III	ACNGT	2 cut(s)	386, 631
HpyCH4IV	ACGT	4 cut(s)	147, 303, 331, 865
HpyCH4V	TGCA	8 cut(s)	223, 329, 347, 523, 560, 754, 767, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 434, 516, 590
HpyF3I	CTNAG	4 cut(s)	401, 420, 432, 459
HpySE526I	ACGT	4 cut(s)	147, 303, 331, 865
Hsp92I	GRCGYC	1 cut(s)	865
Hsp92II	CATG	9 cut(s)	98, 484, 518, 544, 679, 730, 746, 775, 841
Ksp22I	TGATCA	3 cut(s)	100, 697, 745
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
LmnI	GCTCC	1 cut(s)	312
Lsp1109I	GCAGC	1 cut(s)	440
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	4 cut(s)	147, 303, 331, 865
MaeIII	GTNAC	2 cut(s)	188, 334
MalI	GATC	9 cut(s)	102, 171, 185, 342, 699, 741, 747, 835, 856
MboI	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
MboII	GAAGA	4 cut(s)	241, 629, 632, 656
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	4 cut(s)	78, 309, 398, 675
MluCI	AATT	3 cut(s)	500, 568, 877
MlyI	GAGTC	3 cut(s)	464, 680, 803
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	37, 51, 100, 219, 237, 243, 427
MseI	TTAA	4 cut(s)	69, 378, 762, 919
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	177, 178, 452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	4 cut(s)	59, 434, 516, 590
NciI	CCSGG	2 cut(s)	177, 178
NdeI	CATATG	1 cut(s)	750
NdeII	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
NlaIII	CATG	9 cut(s)	98, 484, 518, 544, 679, 730, 746, 775, 841
NlaIV	GGNNCC	2 cut(s)	693, 835
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	2 cut(s)	730, 775
PagI	TCATGA	3 cut(s)	94, 675, 742
PaqCI	CACCTGC	2 cut(s)	53, 334
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	25, 430
PleI	GAGTC	3 cut(s)	463, 680, 803
PmaCI	CACGTG	2 cut(s)	304, 332
PmlI	CACGTG	2 cut(s)	304, 332
PpsI	GAGTC	3 cut(s)	463, 680, 803
Ppu21I	YACGTR	2 cut(s)	304, 332
Psp124BI	GAGCTC	2 cut(s)	78, 675
Psp6I	CCWGG	1 cut(s)	450
PspCI	CACGTG	2 cut(s)	304, 332
PspFI	CCCAGC	2 cut(s)	293, 445
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	693, 835
PspPI	GGNCC	2 cut(s)	10, 691
PstI	CTGCAG	1 cut(s)	873
PsuI	RGATCY	1 cut(s)	833
PsyI	GACNNNGTC	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	2 cut(s)	78, 675
SaqAI	TTAA	4 cut(s)	69, 378, 762, 919
SatI	GCNGC	2 cut(s)	24, 429
Sau3AI	GATC	9 cut(s)	100, 169, 183, 340, 697, 739, 745, 833, 854
Sau96I	GGNCC	2 cut(s)	10, 691
SchI	GAGTC	3 cut(s)	464, 680, 803
ScrFI	CCNGG	3 cut(s)	177, 178, 452
SduI	GDGCHC	4 cut(s)	78, 309, 398, 675
SfcI	CTRYAG	1 cut(s)	869
SinI	GGWCC	2 cut(s)	10, 691
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	55, 377
SmoI	CTYRAG	2 cut(s)	55, 377
Sse9I	AATT	3 cut(s)	500, 568, 877
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	714
SstI	GAGCTC	2 cut(s)	78, 675
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	175, 176, 450
TaaI	ACNGT	2 cut(s)	386, 631
TaiI	ACGT	4 cut(s)	150, 306, 334, 868
TaqI	TCGA	1 cut(s)	182
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	3 cut(s)	500, 568, 877
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	4 cut(s)	69, 378, 762, 919
Tru9I	TTAA	4 cut(s)	69, 378, 762, 919
TscAI	CASTG	2 cut(s)	391, 799
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	526, 630, 639, 668
TspGWI	ACGGA	2 cut(s)	176, 250
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	2 cut(s)	391, 799
Tth111I	GACNNNGTC	1 cut(s)	689
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	10, 691
XapI	RAATTY	2 cut(s)	500, 877
XceI	RCATGY	2 cut(s)	730, 775
XmaI	CCCGGG	1 cut(s)	176
XspI	CTAG	1 cut(s)	714
ZraI	GACGTC	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.