Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Reverse (-)

264440 .. 267364

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGACCAAACAGCCGCGGCAGCAGCAGCTGTAGGCCTTCGTGAGAAAACCGAGGCCTCTGGCTTGAGGGCAGGTGTTGGGGCTGAGCTCGGCCTTGTCACTGCCAAGGGGAACAAGGATAACGCGGATCACAAGAGTACCTTTCACGGGTCGAATCGGAGTGGGTCGATCCATGACCTTGTCCGTGCTGTGACTAGTTTCGGTGTCCTCAGGAAAAAACGAATGACCAGACAGAGGCGATCCTCCACCATCAACTTTCACGACCTCCCTTCTTTCGCGGCAGCTGCTGCTTCCTCTACCCCCTCGCACGTGCTACCACCGCCCTCCACTCTCCCTCCTGGACGTAAAGCAGCCGAGGCTCATCTCCCTACCCTCGAATCAAAGGAAGGAATGGCAATCAACATGGATGACATAGATGGTCTGCATGTTTGGAGCTTCAAGTACAGGTTTTGGCCTAATAACAACAGCCGAATGTATGTACTTGAAAATACTGGTATAAATATCTCCCTTTTTTTCCCTTTTATCAAACATTTGGTTATATATTATATATGTTCAATTATCAGTCTGTTAATGTTGAAATTTTTTTCAGGTGACTTTGTTAATGTACATGGCTTACAGTTTGGAGATTACATCATGGTTTACCAAGATAATCACAACCAGAATTACGTAGGAAAGGCATCTGACCAAGATCATGTATACGGAGACATAAGTGGTATGAACAATGCGGTGAACGACCGCTATATGCAGGAATCTGAGGCTAACAAGTTCAGTTCGAGTTCGTTTTACATGCCGAAAATGGAAGAGGATATGACTGCGGGCATGTCATTTGTGTACGACACCACCACCTTCTCAAACGACTCGCTGCTTGATTTTTTCGGGGGATCGATGATGACAAACTACTCCAGAAATGGGTCTCTGCATGAAAGTTTCGGATCTGTTGAGAACTTGTCTCTTGACGACTTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

323

Amino Acids

35.74

Weight (kDa)

6.04

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	696
AccII	CGCG	3 cut(s)	17, 125, 278
AciI	CCGC	8 cut(s)	15, 17, 125, 278, 320, 725, 736, 815
AclWI	GGATC	5 cut(s)	135, 163, 234, 889, 940
AcsI	RAATTY	1 cut(s)	578
AcvI	CACGTG	1 cut(s)	310
AfaI	GTAC	5 cut(s)	139, 443, 480, 606, 833
AfiI	CCNNNNNNNGG	3 cut(s)	147, 234, 909
AgsI	TTSAA	4 cut(s)	439, 485, 555, 577
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	29, 88, 284, 435
AluI	AGCT	4 cut(s)	29, 88, 284, 435
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	696, 918, 954
AlwI	GGATC	5 cut(s)	135, 163, 234, 889, 940
AlwNI	CAGNNNCTG	2 cut(s)	29, 287
AoxI	GGCC	4 cut(s)	34, 54, 91, 452
ApeKI	GCWGC	8 cut(s)	20, 23, 26, 281, 284, 287, 350, 862
ApoI	RAATTY	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	602, 739
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	209
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BanII	GRGCYC	1 cut(s)	90
BbrPI	CACGTG	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	8 cut(s)	32, 35, 38, 271, 274, 293, 362, 849
BccI	CCATC	2 cut(s)	257, 410
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	3 cut(s)	696, 918, 954
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	62
BlpI	GCTNAGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	886
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	85
Bsa29I	ATCGAT	1 cut(s)	884
BsaAI	YACGTR	2 cut(s)	310, 667
BsaI	GGTCTC	1 cut(s)	918
BsaJI	CCNNGG	4 cut(s)	15, 51, 105, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 234, 909
Bse1I	ACTGG	1 cut(s)	496
Bse21I	CCTNAGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	884
BseDI	CCNNGG	4 cut(s)	15, 51, 105, 354
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	147, 234, 909
BseMII	CTCAG	3 cut(s)	75, 223, 744
BseNI	ACTGG	1 cut(s)	496
BseXI	GCAGC	8 cut(s)	32, 35, 38, 271, 274, 293, 362, 849
Bsh1236I	CGCG	3 cut(s)	17, 125, 278
Bsh1285I	CGRYCG	1 cut(s)	736
BshFI	GGCC	4 cut(s)	36, 56, 93, 454
BshVI	ATCGAT	1 cut(s)	884
BsiEI	CGRYCG	1 cut(s)	736
BsiHKAI	GWGCWC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	147, 234, 909
BsmAI	GTCTC	3 cut(s)	696, 918, 954
BsnI	GGCC	4 cut(s)	36, 56, 93, 454
Bso31I	GGTCTC	1 cut(s)	918
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	8 cut(s)	15, 17, 125, 278, 320, 725, 736, 815
BspANI	GGCC	4 cut(s)	36, 56, 93, 454
BspCNI	CTCAG	3 cut(s)	76, 222, 745
BspDI	ATCGAT	1 cut(s)	884
BspFNI	CGCG	3 cut(s)	17, 125, 278
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	5 cut(s)	135, 163, 234, 889, 940
BspTNI	GGTCTC	1 cut(s)	918
BsrGI	TGTACA	1 cut(s)	604
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	4 cut(s)	15, 51, 105, 354
BssMI	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
BssNAI	GTATAC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	697
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	618
Bst6I	CTCTTC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	604
BstBAI	YACGTR	2 cut(s)	310, 667
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	3 cut(s)	84, 209, 753
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	3 cut(s)	17, 125, 278
BstKTI	GATC	6 cut(s)	130, 171, 242, 691, 884, 935
BstMAI	GTCTC	3 cut(s)	696, 918, 954
BstMBI	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
BstMCI	CGRYCG	1 cut(s)	736
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 23, 26, 284, 287, 319, 356
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	3 cut(s)	428, 790, 823
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	30
BstSNI	TACGTA	1 cut(s)	667
BstUI	CGCG	3 cut(s)	17, 125, 278
BstV1I	GCAGC	8 cut(s)	32, 35, 38, 271, 274, 293, 362, 849
BstX2I	RGATCY	1 cut(s)	932
BstYI	RGATCY	1 cut(s)	932
BstZ17I	GTATAC	1 cut(s)	697
Bsu15I	ATCGAT	1 cut(s)	884
Bsu36I	CCTNAGG	1 cut(s)	209
BsuRI	GGCC	4 cut(s)	36, 56, 93, 454
BsuTUI	ATCGAT	1 cut(s)	884
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	817
CaiI	CAGNNNCTG	2 cut(s)	29, 287
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	884
Csp6I	GTAC	5 cut(s)	138, 442, 479, 605, 832
CviAII	CATG	9 cut(s)	173, 403, 425, 608, 634, 692, 787, 820, 920
CviQI	GTAC	5 cut(s)	138, 442, 479, 605, 832
DdeI	CTNAG	3 cut(s)	84, 209, 753
DpnI	GATC	6 cut(s)	129, 170, 241, 690, 883, 934
DpnII	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Ecl136II	GAGCTC	1 cut(s)	88
Eco105I	TACGTA	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	2 cut(s)	36, 56
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	88
Eco72I	CACGTG	1 cut(s)	310
Eco81I	CCTNAGG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	9 cut(s)	176, 406, 428, 611, 637, 695, 790, 823, 923
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	9 cut(s)	172, 402, 424, 607, 633, 691, 786, 819, 919
FauI	CCCGC	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	696
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	886
HaeIII	GGCC	4 cut(s)	36, 56, 93, 454
Hin1II	CATG	9 cut(s)	176, 406, 428, 611, 637, 695, 790, 823, 923
HinfI	GANTC	4 cut(s)	154, 377, 749, 857
HphI	GGTGA	2 cut(s)	602, 739
Hpy166II	GTNNAC	4 cut(s)	640, 697, 730, 832
Hpy188I	TCNGA	4 cut(s)	159, 682, 754, 932
Hpy188III	TCNNGA	5 cut(s)	41, 211, 260, 903, 953
Hpy8I	GTNNAC	4 cut(s)	640, 697, 730, 832
HpyAV	CCTTC	4 cut(s)	47, 279, 380, 856
HpyCH4III	ACNGT	1 cut(s)	618
HpyCH4IV	ACGT	3 cut(s)	309, 343, 666
HpyCH4V	TGCA	3 cut(s)	424, 745, 919
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 23, 26, 284, 287, 319, 356
HpyF3I	CTNAG	3 cut(s)	84, 209, 753
HpySE526I	ACGT	3 cut(s)	309, 343, 666
Hsp92II	CATG	9 cut(s)	176, 406, 428, 611, 637, 695, 790, 823, 923
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
LmnI	GCTCC	1 cut(s)	432
Lsp1109I	GCAGC	8 cut(s)	32, 35, 38, 271, 274, 293, 362, 849
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	3 cut(s)	309, 343, 666
MaeIII	GTNAC	3 cut(s)	97, 190, 590
MalI	GATC	6 cut(s)	129, 170, 241, 690, 883, 934
MboI	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
MboII	GAAGA	1 cut(s)	812
MflI	RGATCY	1 cut(s)	932
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	555, 578, 661
MlyI	GAGTC	1 cut(s)	851
MseI	TTAA	3 cut(s)	569, 600, 967
MspA1I	CMGCKG	3 cut(s)	17, 29, 284
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	3 cut(s)	17, 125, 278
MwoI	GCNNNNNNNGC	7 cut(s)	20, 23, 26, 284, 287, 319, 356
NdeII	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
NlaIII	CATG	9 cut(s)	176, 406, 428, 611, 637, 695, 790, 823, 923
NmeAIII	GCCGAG	2 cut(s)	69, 379
NmuCI	GTSAC	3 cut(s)	97, 190, 590
NspI	RCATGY	3 cut(s)	428, 790, 823
PaqCI	CACCTGC	1 cut(s)	62
PceI	AGGCCT	2 cut(s)	36, 56
PfeI	GAWTC	3 cut(s)	154, 377, 749
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	337
PleI	GAGTC	1 cut(s)	851
PmaCI	CACGTG	1 cut(s)	310
PmlI	CACGTG	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	851
Ppu21I	YACGTR	2 cut(s)	310, 667
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	2 cut(s)	29, 287
PsuI	RGATCY	1 cut(s)	932
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	2 cut(s)	29, 284
RsaI	GTAC	5 cut(s)	139, 443, 480, 606, 833
RsaNI	GTAC	5 cut(s)	138, 442, 479, 605, 832
SacI	GAGCTC	1 cut(s)	90
SacII	CCGCGG	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	569, 600, 967
Sau3AI	GATC	6 cut(s)	127, 168, 239, 688, 881, 932
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	851
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SnaBI	TACGTA	1 cut(s)	667
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	3 cut(s)	555, 578, 661
SseBI	AGGCCT	2 cut(s)	36, 56
SsiI	CCGC	8 cut(s)	15, 17, 125, 278, 320, 725, 736, 815
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	90
StuI	AGGCCT	2 cut(s)	36, 56
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	618
TaiI	ACGT	3 cut(s)	312, 346, 669
TaqI	TCGA	5 cut(s)	152, 167, 375, 773, 884
TasI	AATT	3 cut(s)	555, 578, 661
TatI	WGTACW	3 cut(s)	441, 478, 604
TauI	GCSGC	3 cut(s)	17, 20, 281
TfiI	GAWTC	3 cut(s)	154, 377, 749
Tru1I	TTAA	3 cut(s)	569, 600, 967
Tru9I	TTAA	3 cut(s)	569, 600, 967
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	3 cut(s)	97, 190, 590
TseI	GCWGC	8 cut(s)	20, 23, 26, 281, 284, 287, 350, 862
Tsp45I	GTSAC	3 cut(s)	97, 190, 590
TspDTI	ATGAA	2 cut(s)	731, 936
TspGWI	ACGGA	2 cut(s)	173, 714
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	3 cut(s)	428, 790, 823
XmiI	GTMKAC	1 cut(s)	696
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.