Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Reverse (-)

344663 .. 347739

Gene Structure 3077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATGATGGACCAAACCCACGCCGCCCTTCACAGCAGAACCGAGGCCTTTGCCTTGAGGGCAGGTGTTAACGAGCTCGGCTTTCTCACTCGTCATGATGATAAGGAGGTTGACAACAACAACAACAAGAAGCACGACAACAACGTCAACTCCTTTCACGGGTCGGATCGTCCCGGGTCGATCCGTGACCTTGTTCGTGCCGTCTCAACTTTTGGTGTGCAGAGGAAGAAACGGATGATGAGGCAGAGGCGAGCCACCACCATCAACTTTCAGCTCTCTTTTGCCACCCCCAGCTCTCACGTGGTCCCTTCCACTTCCCCACCTGCACGTGTAACTGATCCTGCAAGGTTGAGATTTCTTTTCCAAAAGGAACTTAAGAACAGTGATGTGAGCACTCTCAGAAGGGTGGTACTCCCTAAGAAAGCAGCTGAGGCTCATCTCCCAGCCCTGGAGTCTAAGGAAGGGATTTCTATCAGCATGGATGACATAGATGGGGAATTCGTTAGCACACATGGCTTGCAACTTGGAGATTTCATCATGGTTTATCAAGATAGTGCAAACCACAATTATGTCATTCAGGCTAAAAAGGCTAACTCTGACCAAGATGAAGATGATGAAGATGATACTGTATATGGAGTGGAAGAAACTATGAACAATGCTGTGAATGAGCTCATGATTTATGACTCGGTCCCTGATCAGGCTAACAAGTCTAGCTCGTTTTACATGCCGACAATGGATCATGATCATATGCAGGATGTTAATGCAGGCATGTCATTTGTGTATGACACCACTGCCTTCTCAAACGACTCTCTCCTTGATTTTTTGGGTGGATCCATGACCAACTATTCCAGATCAAATGGACGTCTGCAGGAAAATTTTGGGTCTGTTGAGAACCTGTCTCTTGATGACTTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

305

Amino Acids

34.28

Weight (kDa)

5.17

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	53, 331
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	865
Acc36I	ACCTGC	2 cut(s)	53, 331
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	6 cut(s)	174, 175, 332, 744, 825, 838
AcsI	RAATTY	2 cut(s)	497, 874
AcvI	CACGTG	2 cut(s)	301, 329
AcyI	GRCGYC	1 cut(s)	862
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	159, 448, 697
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	6 cut(s)	76, 274, 294, 428, 670, 714
AluI	AGCT	6 cut(s)	76, 274, 294, 428, 670, 714
Alw21I	GWGCWC	3 cut(s)	78, 395, 672
Alw26I	GTCTC	2 cut(s)	208, 903
AlwI	GGATC	6 cut(s)	174, 175, 332, 744, 825, 838
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	2 cut(s)	497, 874
AspS9I	GGNCC	3 cut(s)	10, 304, 688
AsuC2I	CCSGG	2 cut(s)	174, 175
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	3 cut(s)	10, 304, 688
BamHI	GGATCC	1 cut(s)	830
BanII	GRGCYC	2 cut(s)	78, 672
BbrPI	CACGTG	2 cut(s)	301, 329
Bbv12I	GWGCWC	3 cut(s)	78, 395, 672
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	2 cut(s)	269, 485
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	2 cut(s)	694, 742
BcnI	CCSGG	2 cut(s)	174, 175
BcoDI	GTCTC	2 cut(s)	208, 903
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	866
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	2 cut(s)	53, 331
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	24, 426
BlsI	GCNGC	2 cut(s)	25, 427
Bme1390I	CCNGG	3 cut(s)	174, 175, 449
Bme18I	GGWCC	3 cut(s)	10, 304, 688
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	10, 304, 688
BmiI	GGNNCC	3 cut(s)	306, 690, 832
BmrFI	CCNGG	3 cut(s)	174, 175, 449
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	2 cut(s)	174, 175
BsaAI	YACGTR	2 cut(s)	301, 329
BsaBI	GATNNNNATC	2 cut(s)	470, 741
BsaHI	GRCGYC	1 cut(s)	862
BsaJI	CCNNGG	3 cut(s)	42, 173, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 448, 697
Bse8I	GATNNNNATC	2 cut(s)	470, 741
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	42, 173, 447
BseGI	GGATG	3 cut(s)	240, 487, 760
BseJI	GATNNNNATC	2 cut(s)	470, 741
BseLI	CCNNNNNNNGG	3 cut(s)	159, 448, 697
BseMII	CTCAG	2 cut(s)	412, 420
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	2 cut(s)	290, 442
BsgI	GTGCAG	2 cut(s)	239, 309
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	3 cut(s)	78, 395, 672
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	3 cut(s)	156, 290, 674
BslI	CCNNNNNNNGG	3 cut(s)	159, 448, 697
BsmAI	GTCTC	2 cut(s)	208, 903
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	3 cut(s)	156, 290, 674
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	78, 395, 672
Bsp143I	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	411, 421
BspHI	TCATGA	3 cut(s)	94, 672, 739
BspLI	GGNNCC	3 cut(s)	306, 690, 832
BspMAI	CTGCAG	1 cut(s)	870
BspMI	ACCTGC	2 cut(s)	53, 331
BspPI	GGATC	6 cut(s)	174, 175, 332, 744, 825, 838
BspTI	CTTAAG	1 cut(s)	374
BssECI	CCNNGG	3 cut(s)	42, 173, 447
BssMI	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
BssNI	GRCGYC	1 cut(s)	862
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	383, 628
BstACI	GRCGYC	1 cut(s)	862
BstAFI	CTTAAG	1 cut(s)	374
BstBAI	YACGTR	2 cut(s)	301, 329
BstC8I	GCNNGC	3 cut(s)	252, 518, 766
BstDEI	CTNAG	4 cut(s)	398, 417, 429, 456
BstF5I	GGATG	3 cut(s)	240, 487, 760
BstKTI	GATC	8 cut(s)	169, 183, 340, 697, 739, 745, 833, 854
BstMAI	GTCTC	2 cut(s)	208, 903
BstMBI	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 431, 513, 587
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	2 cut(s)	727, 772
BstSCI	CCNGG	3 cut(s)	172, 173, 447
BstSFI	CTRYAG	1 cut(s)	866
BstV1I	GCAGC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	240, 487, 760
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	388, 789
BveI	ACCTGC	2 cut(s)	53, 331
Cac8I	GCNNGC	3 cut(s)	252, 518, 766
CciI	TCATGA	3 cut(s)	94, 672, 739
Cfr13I	GGNCC	3 cut(s)	10, 304, 688
Cfr9I	CCCGGG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	9 cut(s)	95, 478, 512, 538, 673, 724, 740, 769, 835
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	4 cut(s)	398, 417, 429, 456
DpnI	GATC	8 cut(s)	168, 182, 339, 696, 738, 744, 832, 853
DpnII	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Ecl136II	GAGCTC	2 cut(s)	76, 670
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	78, 672
Eco47I	GGWCC	3 cut(s)	10, 304, 688
Eco53kI	GAGCTC	2 cut(s)	76, 670
Eco72I	CACGTG	2 cut(s)	301, 329
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	2 cut(s)	76, 670
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	78, 672
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	9 cut(s)	98, 481, 515, 541, 676, 727, 743, 772, 838
FaqI	GGGAC	3 cut(s)	156, 290, 674
FatI	CATG	9 cut(s)	94, 477, 511, 537, 672, 723, 739, 768, 834
FauNDI	CATATG	1 cut(s)	747
FbaI	TGATCA	2 cut(s)	694, 742
Fnu4HI	GCNGC	2 cut(s)	24, 426
FokI	GGATG	3 cut(s)	247, 494, 767
FriOI	GRGCYC	2 cut(s)	78, 672
Fsp4HI	GCNGC	2 cut(s)	24, 426
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	2 cut(s)	24, 426
GsaI	CCCAGC	2 cut(s)	294, 446
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	862
Hin1II	CATG	9 cut(s)	98, 481, 515, 541, 676, 727, 743, 772, 838
HincII	GTYRAC	3 cut(s)	70, 112, 148
HindII	GTYRAC	3 cut(s)	70, 112, 148
HinfI	GANTC	3 cut(s)	452, 683, 806
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	3 cut(s)	70, 112, 148
Hpy188I	TCNGA	3 cut(s)	166, 401, 598
Hpy188III	TCNNGA	6 cut(s)	95, 548, 673, 740, 849, 902
Hpy8I	GTNNAC	3 cut(s)	70, 112, 148
HpyAV	CCTTC	5 cut(s)	38, 318, 396, 455, 805
HpyCH4III	ACNGT	2 cut(s)	383, 628
HpyCH4IV	ACGT	4 cut(s)	144, 300, 328, 862
HpyCH4V	TGCA	8 cut(s)	220, 326, 344, 520, 557, 751, 764, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 431, 513, 587
HpyF3I	CTNAG	4 cut(s)	398, 417, 429, 456
HpySE526I	ACGT	4 cut(s)	144, 300, 328, 862
Hsp92I	GRCGYC	1 cut(s)	862
Hsp92II	CATG	9 cut(s)	98, 481, 515, 541, 676, 727, 743, 772, 838
Ksp22I	TGATCA	2 cut(s)	694, 742
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
Lsp1109I	GCAGC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	4 cut(s)	144, 300, 328, 862
MaeIII	GTNAC	2 cut(s)	185, 331
MalI	GATC	8 cut(s)	168, 182, 339, 696, 738, 744, 832, 853
MboI	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
MboII	GAAGA	4 cut(s)	238, 620, 629, 653
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	3 cut(s)	78, 395, 672
MluCI	AATT	3 cut(s)	497, 565, 874
MlyI	GAGTC	3 cut(s)	461, 677, 800
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	7 cut(s)	37, 51, 100, 216, 234, 240, 424
MseI	TTAA	4 cut(s)	69, 375, 759, 916
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	428
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	174, 175, 449
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	4 cut(s)	59, 431, 513, 587
NciI	CCSGG	2 cut(s)	174, 175
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
NlaIII	CATG	9 cut(s)	98, 481, 515, 541, 676, 727, 743, 772, 838
NlaIV	GGNNCC	3 cut(s)	306, 690, 832
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	2 cut(s)	727, 772
PagI	TCATGA	3 cut(s)	94, 672, 739
PaqCI	CACCTGC	2 cut(s)	53, 331
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	686
PkrI	GCNGC	2 cut(s)	25, 427
PleI	GAGTC	3 cut(s)	460, 677, 800
PmaCI	CACGTG	2 cut(s)	301, 329
PmlI	CACGTG	2 cut(s)	301, 329
PpsI	GAGTC	3 cut(s)	460, 677, 800
Ppu21I	YACGTR	2 cut(s)	301, 329
Psp124BI	GAGCTC	2 cut(s)	78, 672
Psp6I	CCWGG	1 cut(s)	447
PspCI	CACGTG	2 cut(s)	301, 329
PspFI	CCCAGC	2 cut(s)	290, 442
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	3 cut(s)	306, 690, 832
PspPI	GGNCC	3 cut(s)	10, 304, 688
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	1 cut(s)	830
PsyI	GACNNNGTC	1 cut(s)	686
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	2 cut(s)	78, 672
SaqAI	TTAA	4 cut(s)	69, 375, 759, 916
SatI	GCNGC	2 cut(s)	24, 426
Sau3AI	GATC	8 cut(s)	166, 180, 337, 694, 736, 742, 830, 851
Sau96I	GGNCC	3 cut(s)	10, 304, 688
SchI	GAGTC	3 cut(s)	461, 677, 800
ScrFI	CCNGG	3 cut(s)	174, 175, 449
SduI	GDGCHC	3 cut(s)	78, 395, 672
SfcI	CTRYAG	1 cut(s)	866
SinI	GGWCC	3 cut(s)	10, 304, 688
SmaI	CCCGGG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	55, 374
SmoI	CTYRAG	2 cut(s)	55, 374
Sse9I	AATT	3 cut(s)	497, 565, 874
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	2 cut(s)	78, 672
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	172, 173, 447
TaaI	ACNGT	2 cut(s)	383, 628
TaiI	ACGT	4 cut(s)	147, 303, 331, 865
TaqI	TCGA	1 cut(s)	179
TaqII	GACCGA	1 cut(s)	676
TasI	AATT	3 cut(s)	497, 565, 874
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	4 cut(s)	69, 375, 759, 916
Tru9I	TTAA	4 cut(s)	69, 375, 759, 916
TscAI	CASTG	2 cut(s)	388, 796
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	523, 621, 630, 665
TspGWI	ACGGA	2 cut(s)	173, 247
TspMI	CCCGGG	1 cut(s)	173
TspRI	CASTG	2 cut(s)	388, 796
Tth111I	GACNNNGTC	1 cut(s)	686
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	10, 304, 688
XapI	RAATTY	2 cut(s)	497, 874
XceI	RCATGY	2 cut(s)	727, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	173
XspI	CTAG	1 cut(s)	711
ZraI	GACGTC	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.