Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325273.1

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Forward (+)

182 .. 906

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtatgtgctcgagaatactggggaattcgttagcacacatggcttgcaacttggagatttcatcatggtttatcaagatagtgcaaaccacaattatgtcattcaggctaaaaaggccaactctgtccaagatgatgatgaagaagatgaaactgtatatggagtggaagaaactatgaacaatgctgtgaatgagctcatgatttatgactcggtccctgatcaggctaacaagtctagctcgttttacatgccgacaatggatcatgatcatatgcaggatgttaatgcaggcatgtcatttgtgtatgacaccactgccttctcaaacgactctctccttgattttttgggtggatccatgaccaactattccagatcaaatggacgtctgcaggaaaattttgggtctgttgagaacctgtctcttgatgacttctattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

148

Amino Acids

16.7

Weight (kDa)

4.05

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	394
AclWI	GGATC	3 cut(s)	273, 354, 367
AcsI	RAATTY	2 cut(s)	26, 403
AcyI	GRCGYC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	199, 243
AluI	AGCT	2 cut(s)	199, 243
Alw21I	GWGCWC	2 cut(s)	12, 201
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	3 cut(s)	273, 354, 367
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	117
ApoI	RAATTY	2 cut(s)	26, 403
AspS9I	GGNCC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	12, 201
BclI	TGATCA	2 cut(s)	223, 271
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	219, 361
BmrI	ACTGGG	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	270
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	12, 201
BsiHKCI	CYCGRG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	12, 201
Bsp143I	GATC	5 cut(s)	223, 265, 271, 359, 380
BspANI	GGCC	1 cut(s)	119
BspHI	TCATGA	2 cut(s)	201, 268
BspLI	GGNNCC	2 cut(s)	219, 361
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	3 cut(s)	273, 354, 367
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	5 cut(s)	223, 265, 271, 359, 380
BssNI	GRCGYC	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	47, 295
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	5 cut(s)	226, 268, 274, 362, 383
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	5 cut(s)	223, 265, 271, 359, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 116
BstNSI	RCATGY	2 cut(s)	256, 301
BstSFI	CTRYAG	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	47, 295
CciI	TCATGA	2 cut(s)	201, 268
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	7 cut(s)	41, 67, 202, 253, 269, 298, 364
CviJI	RGCY	6 cut(s)	45, 110, 119, 199, 230, 243
CviKI_1	RGCY	6 cut(s)	45, 110, 119, 199, 230, 243
DpnI	GATC	5 cut(s)	225, 267, 273, 361, 382
DpnII	GATC	5 cut(s)	223, 265, 271, 359, 380
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	7 cut(s)	44, 70, 205, 256, 272, 301, 367
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	7 cut(s)	40, 66, 201, 252, 268, 297, 363
FauNDI	CATATG	1 cut(s)	276
FbaI	TGATCA	2 cut(s)	223, 271
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	7 cut(s)	44, 70, 205, 256, 272, 301, 367
HinfI	GANTC	2 cut(s)	212, 335
Hpy188III	TCNNGA	6 cut(s)	13, 77, 202, 269, 378, 431
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	5 cut(s)	49, 86, 280, 293, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 116
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	7 cut(s)	44, 70, 205, 256, 272, 301, 367
Ksp22I	TGATCA	2 cut(s)	223, 271
Kzo9I	GATC	5 cut(s)	223, 265, 271, 359, 380
LpnPI	CCDG	9 cut(s)	6, 92, 212, 234, 266, 279, 383, 391, 437
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	391
MalI	GATC	5 cut(s)	225, 267, 273, 361, 382
MboI	GATC	5 cut(s)	223, 265, 271, 359, 380
MboII	GAAGA	3 cut(s)	155, 158, 182
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	12, 201
MluCI	AATT	3 cut(s)	26, 94, 403
MlyI	GAGTC	2 cut(s)	206, 329
MseI	TTAA	2 cut(s)	288, 445
MslI	CAYNNNNRTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	42, 116
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	5 cut(s)	223, 265, 271, 359, 380
NlaIII	CATG	7 cut(s)	44, 70, 205, 256, 272, 301, 367
NlaIV	GGNNCC	2 cut(s)	219, 361
NspI	RCATGY	2 cut(s)	256, 301
PaeR7I	CTCGAG	1 cut(s)	11
PagI	TCATGA	2 cut(s)	201, 268
PflFI	GACNNNGTC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	206, 329
PpsI	GAGTC	2 cut(s)	206, 329
Psp124BI	GAGCTC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	219, 361
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	359
PsyI	GACNNNGTC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	288, 445
Sau3AI	GATC	5 cut(s)	223, 265, 271, 359, 380
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	206, 329
SduI	GDGCHC	2 cut(s)	12, 201
SetI	ASST	4 cut(s)	201, 245, 394, 426
SfcI	CTRYAG	1 cut(s)	395
Sfr274I	CTCGAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	26, 94, 403
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	12
TaqII	GACCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	26, 94, 403
Tru1I	TTAA	2 cut(s)	288, 445
Tru9I	TTAA	2 cut(s)	288, 445
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	52, 156, 165, 194
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	26, 403
XceI	RCATGY	2 cut(s)	256, 301
XhoI	CTCGAG	1 cut(s)	11
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.