Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Forward (+)

82631213 .. 82634001

Gene Structure 2789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G055100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGACCAAACCCACGCCGCCCTTCACAGCAAAACCGAGGCCTTTGCCTTGAGGGCAGGTGTTAACGAGCTCGGCTTTCTCACTCGTCATGATGATCAGGAGGTTGACAACAACAACAGCAACAAGAAGCACGACAACAACGTCAACTCCTTTCAAGGGTCGGATCGTCCCGGGTCGATCCGTGACCTTGTTCGTGCCGTCTCAACTTTTGGTGTGCAGAGGAAGAAACGGATGATGAGGCAGAGGCGAGCCACCACCATCAACTTTCAGCTCTCTTTTGCCACCCCCAGCTCTCACGTGCTCCCTTCCACTTCCCCACCTGCACGTGTAACTGATCCTGCAAGGTTGAGATTTCTTTTCCAAAAGGAACTTAAGAACAGTGATGTGAGCACTCTCAGAAGGGTGGTACTCCCTAAGAAAGCAGCTGAGGCTCATCTCCCAGCCCTGGAGTCTAAGGAAGGGATTTCTATCAGCATGGATGACATAGATGGTCTGCATGTTTGGAGCTTTAAGTACAGATTTTGGCCTAACAACAACAGCCGCATGTATGTGCTCGAGAATACTGGGGAATTCGTTAGCACACATGGCTTGCAACTTGGAGATTTCATCATGGTTTATCAAGATAGTGCAAACCACAATTATGTCATTCAGGCTAAAAAGGCCAACTCTGTCCAAGATGATGATGAAGAAGATGACACTGTATATGGAGTGGAAGAAACTATGAACAATGCTGTGAATGAGCTCATGATTTATGACTCGGTCCCTGATCAGGCTAACAAGTCTAGCTCGTTTTACATGCCGACAATGGATCATGATCATATGCAGGATGTTAATGCAGGCATGTCATTTGTGTATGACACCACTGCCTTCTCAAACGACTCTCTCCTTGATTTTTTGGGTGGATCCATGACCAACTATTCCAGATCAAATGGACGTCTGCAGGAAAATTTTGGGTCTGTTGAGAACCTGTCTCTTGATGACTTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

329

Amino Acids

37.21

Weight (kDa)

5.36

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	120 - 217	1.4e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	47, 328
AasI	GACNNNNNNGTC	1 cut(s)	140
AatII	GACGTC	1 cut(s)	937
Acc36I	ACCTGC	2 cut(s)	47, 328
AciI	CCGC	2 cut(s)	18, 541
AclWI	GGATC	6 cut(s)	171, 172, 329, 816, 897, 910
AcsI	RAATTY	2 cut(s)	569, 946
AcvI	CACGTG	2 cut(s)	298, 326
AcyI	GRCGYC	1 cut(s)	934
AfaI	GTAC	2 cut(s)	408, 515
AfiI	CCNNNNNNNGG	3 cut(s)	156, 445, 769
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	7 cut(s)	70, 271, 291, 425, 507, 742, 786
AluI	AGCT	7 cut(s)	70, 271, 291, 425, 507, 742, 786
Alw21I	GWGCWC	5 cut(s)	72, 303, 392, 555, 744
Alw26I	GTCTC	2 cut(s)	205, 975
AlwI	GGATC	6 cut(s)	171, 172, 329, 816, 897, 910
Ama87I	CYCGRG	2 cut(s)	170, 554
AoxI	GGCC	3 cut(s)	39, 524, 660
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	2 cut(s)	569, 946
AspS9I	GGNCC	2 cut(s)	4, 760
AsuC2I	CCSGG	2 cut(s)	171, 172
AvaI	CYCGRG	2 cut(s)	170, 554
AvaII	GGWCC	2 cut(s)	4, 760
BamHI	GGATCC	1 cut(s)	902
BanII	GRGCYC	2 cut(s)	72, 744
BbrPI	CACGTG	2 cut(s)	298, 326
Bbv12I	GWGCWC	5 cut(s)	72, 303, 392, 555, 744
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	2 cut(s)	266, 482
BceAI	ACGGC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	446
BclI	TGATCA	3 cut(s)	94, 766, 814
BcnI	CCSGG	2 cut(s)	171, 172
BcoDI	GTCTC	2 cut(s)	205, 975
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	1 cut(s)	938
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	2 cut(s)	47, 328
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	3 cut(s)	18, 423, 541
BlsI	GCNGC	3 cut(s)	19, 424, 542
Bme1390I	CCNGG	3 cut(s)	171, 172, 446
Bme18I	GGWCC	2 cut(s)	4, 760
BmeT110I	CYCGRG	2 cut(s)	170, 554
BmgT120I	GGNCC	2 cut(s)	4, 760
BmiI	GGNNCC	2 cut(s)	762, 904
BmrFI	CCNGG	3 cut(s)	171, 172, 446
BmrI	ACTGGG	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	171, 172
BsaAI	YACGTR	2 cut(s)	298, 326
BsaBI	GATNNNNATC	2 cut(s)	467, 813
BsaHI	GRCGYC	1 cut(s)	934
BsaJI	CCNNGG	3 cut(s)	36, 170, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 445, 769
Bse1I	ACTGG	1 cut(s)	568
Bse8I	GATNNNNATC	2 cut(s)	467, 813
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	36, 170, 444
BseGI	GGATG	3 cut(s)	237, 484, 832
BseJI	GATNNNNATC	2 cut(s)	467, 813
BseLI	CCNNNNNNNGG	3 cut(s)	156, 445, 769
BseMII	CTCAG	2 cut(s)	409, 417
BseNI	ACTGG	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	434
BseYI	CCCAGC	2 cut(s)	287, 439
BsgI	GTGCAG	2 cut(s)	236, 306
BshFI	GGCC	3 cut(s)	41, 526, 662
BsiHKAI	GWGCWC	5 cut(s)	72, 303, 392, 555, 744
BsiHKCI	CYCGRG	2 cut(s)	170, 554
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	153, 746
BslI	CCNNNNNNNGG	3 cut(s)	156, 445, 769
BsmAI	GTCTC	2 cut(s)	205, 975
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	2 cut(s)	153, 746
BsnI	GGCC	3 cut(s)	41, 526, 662
BsoBI	CYCGRG	2 cut(s)	170, 554
Bsp1286I	GDGCHC	5 cut(s)	72, 303, 392, 555, 744
Bsp143I	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
BspACI	CCGC	2 cut(s)	18, 541
BspANI	GGCC	3 cut(s)	41, 526, 662
BspCNI	CTCAG	2 cut(s)	408, 418
BspHI	TCATGA	3 cut(s)	88, 744, 811
BspLI	GGNNCC	2 cut(s)	762, 904
BspMAI	CTGCAG	1 cut(s)	942
BspMI	ACCTGC	2 cut(s)	47, 328
BspPI	GGATC	6 cut(s)	171, 172, 329, 816, 897, 910
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	3 cut(s)	36, 170, 444
BssMI	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
BssNI	GRCGYC	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	380, 700
BstACI	GRCGYC	1 cut(s)	934
BstAFI	CTTAAG	1 cut(s)	371
BstBAI	YACGTR	2 cut(s)	298, 326
BstC8I	GCNNGC	3 cut(s)	249, 590, 838
BstDEI	CTNAG	4 cut(s)	395, 414, 426, 453
BstF5I	GGATG	3 cut(s)	237, 484, 832
BstKTI	GATC	9 cut(s)	97, 166, 180, 337, 769, 811, 817, 905, 926
BstMAI	GTCTC	2 cut(s)	205, 975
BstMBI	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 428, 585, 659
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	4 cut(s)	500, 547, 799, 844
BstSCI	CCNGG	3 cut(s)	169, 170, 444
BstSFI	CTRYAG	1 cut(s)	938
BstV1I	GCAGC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	902
BstYI	RGATCY	1 cut(s)	902
BsuRI	GGCC	3 cut(s)	41, 526, 662
BtsCI	GGATG	3 cut(s)	237, 484, 832
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	3 cut(s)	385, 696, 861
BveI	ACCTGC	2 cut(s)	47, 328
Cac8I	GCNNGC	3 cut(s)	249, 590, 838
CciI	TCATGA	3 cut(s)	88, 744, 811
Cfr13I	GGNCC	2 cut(s)	4, 760
Cfr9I	CCCGGG	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	407, 514
CviQI	GTAC	2 cut(s)	407, 514
DdeI	CTNAG	4 cut(s)	395, 414, 426, 453
DpnI	GATC	9 cut(s)	96, 165, 179, 336, 768, 810, 816, 904, 925
DpnII	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Ecl136II	GAGCTC	2 cut(s)	70, 742
Eco147I	AGGCCT	1 cut(s)	41
Eco24I	GRGCYC	2 cut(s)	72, 744
Eco47I	GGWCC	2 cut(s)	4, 760
Eco53kI	GAGCTC	2 cut(s)	70, 742
Eco72I	CACGTG	2 cut(s)	298, 326
Eco88I	CYCGRG	2 cut(s)	170, 554
EcoICRI	GAGCTC	2 cut(s)	70, 742
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	2 cut(s)	72, 744
Esp3I	CGTCTC	1 cut(s)	205
FaqI	GGGAC	2 cut(s)	153, 746
FauNDI	CATATG	1 cut(s)	819
FbaI	TGATCA	3 cut(s)	94, 766, 814
Fnu4HI	GCNGC	3 cut(s)	18, 423, 541
FokI	GGATG	3 cut(s)	244, 491, 839
FriOI	GRGCYC	2 cut(s)	72, 744
Fsp4HI	GCNGC	3 cut(s)	18, 423, 541
FspBI	CTAG	1 cut(s)	783
GluI	GCNGC	3 cut(s)	18, 423, 541
GsaI	CCCAGC	2 cut(s)	291, 443
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	3 cut(s)	41, 526, 662
HapII	CCGG	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	934
HincII	GTYRAC	3 cut(s)	64, 106, 145
HindII	GTYRAC	3 cut(s)	64, 106, 145
HinfI	GANTC	3 cut(s)	449, 755, 878
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	3 cut(s)	64, 106, 145
Hpy188I	TCNGA	2 cut(s)	163, 398
Hpy188III	TCNNGA	8 cut(s)	89, 98, 556, 620, 745, 812, 921, 974
Hpy8I	GTNNAC	3 cut(s)	64, 106, 145
HpyAV	CCTTC	5 cut(s)	32, 315, 393, 452, 877
HpyCH4III	ACNGT	2 cut(s)	380, 700
HpyCH4IV	ACGT	4 cut(s)	141, 297, 325, 934
HpyCH4V	TGCA	9 cut(s)	217, 323, 341, 496, 592, 629, 823, 836, 940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 428, 585, 659
HpyF3I	CTNAG	4 cut(s)	395, 414, 426, 453
HpySE526I	ACGT	4 cut(s)	141, 297, 325, 934
Hsp92I	GRCGYC	1 cut(s)	934
Ksp22I	TGATCA	3 cut(s)	94, 766, 814
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
LmnI	GCTCC	2 cut(s)	306, 504
Lsp1109I	GCAGC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	4 cut(s)	141, 297, 325, 934
MaeIII	GTNAC	2 cut(s)	182, 328
MalI	GATC	9 cut(s)	96, 165, 179, 336, 768, 810, 816, 904, 925
MboI	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
MboII	GAAGA	4 cut(s)	235, 698, 701, 725
MflI	RGATCY	1 cut(s)	902
MhlI	GDGCHC	5 cut(s)	72, 303, 392, 555, 744
MluCI	AATT	3 cut(s)	569, 637, 946
MlyI	GAGTC	3 cut(s)	458, 749, 872
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	31, 45, 94, 213, 231, 237, 421
MseI	TTAA	5 cut(s)	63, 372, 510, 831, 988
MslI	CAYNNNNRTG	2 cut(s)	548, 639
MspA1I	CMGCKG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	3 cut(s)	171, 172, 446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	53, 428, 585, 659
NciI	CCSGG	2 cut(s)	171, 172
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
NlaIV	GGNNCC	2 cut(s)	762, 904
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	4 cut(s)	500, 547, 799, 844
PaeR7I	CTCGAG	1 cut(s)	554
PagI	TCATGA	3 cut(s)	88, 744, 811
PaqCI	CACCTGC	2 cut(s)	47, 328
PceI	AGGCCT	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	758
PkrI	GCNGC	3 cut(s)	19, 424, 542
PleI	GAGTC	3 cut(s)	457, 749, 872
PmaCI	CACGTG	2 cut(s)	298, 326
PmlI	CACGTG	2 cut(s)	298, 326
PpsI	GAGTC	3 cut(s)	457, 749, 872
Ppu21I	YACGTR	2 cut(s)	298, 326
Psp124BI	GAGCTC	2 cut(s)	72, 744
Psp6I	CCWGG	1 cut(s)	444
PspCI	CACGTG	2 cut(s)	298, 326
PspFI	CCCAGC	2 cut(s)	287, 439
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	762, 904
PspPI	GGNCC	2 cut(s)	4, 760
PstI	CTGCAG	1 cut(s)	942
PsuI	RGATCY	1 cut(s)	902
PsyI	GACNNNGTC	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	408, 515
RsaNI	GTAC	2 cut(s)	407, 514
RseI	CAYNNNNRTG	2 cut(s)	548, 639
SacI	GAGCTC	2 cut(s)	72, 744
SaqAI	TTAA	5 cut(s)	63, 372, 510, 831, 988
SatI	GCNGC	3 cut(s)	18, 423, 541
Sau3AI	GATC	9 cut(s)	94, 163, 177, 334, 766, 808, 814, 902, 923
Sau96I	GGNCC	2 cut(s)	4, 760
SchI	GAGTC	3 cut(s)	458, 749, 872
ScrFI	CCNGG	3 cut(s)	171, 172, 446
SduI	GDGCHC	5 cut(s)	72, 303, 392, 555, 744
SfcI	CTRYAG	1 cut(s)	938
Sfr274I	CTCGAG	1 cut(s)	554
SinI	GGWCC	2 cut(s)	4, 760
SlaI	CTCGAG	1 cut(s)	554
SmaI	CCCGGG	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	548, 639
SmlI	CTYRAG	3 cut(s)	49, 371, 554
SmoI	CTYRAG	3 cut(s)	49, 371, 554
Sse9I	AATT	3 cut(s)	569, 637, 946
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	2 cut(s)	18, 541
SspMI	CTAG	1 cut(s)	783
SstI	GAGCTC	2 cut(s)	72, 744
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	169, 170, 444
TaaI	ACNGT	2 cut(s)	380, 700
TaiI	ACGT	4 cut(s)	144, 300, 328, 937
TaqI	TCGA	2 cut(s)	176, 555
TaqII	GACCGA	1 cut(s)	748
TasI	AATT	3 cut(s)	569, 637, 946
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	2 cut(s)	20, 543
Tru1I	TTAA	5 cut(s)	63, 372, 510, 831, 988
Tru9I	TTAA	5 cut(s)	63, 372, 510, 831, 988
TscAI	CASTG	3 cut(s)	385, 703, 868
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	595, 699, 737
TspGWI	ACGGA	2 cut(s)	170, 244
TspMI	CCCGGG	1 cut(s)	170
TspRI	CASTG	3 cut(s)	385, 703, 868
Tth111I	GACNNNGTC	1 cut(s)	758
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	4, 760
XapI	RAATTY	2 cut(s)	569, 946
XceI	RCATGY	4 cut(s)	500, 547, 799, 844
XhoI	CTCGAG	1 cut(s)	554
XmaI	CCCGGG	1 cut(s)	170
XspI	CTAG	1 cut(s)	783
ZraI	GACGTC	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.