Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Forward (+)

27052919 .. 27056149

Gene Structure 3231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G312100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATGATGGACCAAGCAGCAGCTGGCCTAATTCATCATGAGAAAACCGAGGCCTGTGGGTTGAGGGCAGGTGTTGAGGCTGATCTCGGCCTTGTCACTGCCAAGGGGGACAAGACTTCCTTTCACGGGTCGGATCGGAGCTGCTCCATCCATGACCATGACGACCTTGTCCATGCTGTGACTAGTTTTGGTGTCCACAGGAAGAAAAGAATGACCAGACAGAGGCGATCATCCATCATCAACCTTCATCATCTCACTTTTGCTTCCTCCACCACCACCTCGCACGTGCTGCCCTCCCTCCAACCCCCCTCCTCTCTCCCGCCTGCACGTGTTATTGATCCAACAAGGTTGAGATTTCTTTTCCAAAAGGAGCTTAAGAATAGTGATGTGAGCTCTCTCAGAAGAATGATACTCCCCAAGAAAGCAGCTGAGGCTCATCTCCCTGCCCTCGAATCAAAGGAAGGAATTCCAATCAGCATGGATGACATAGATGGTCTTCATGTTTGGAGCTTCAAGTACAGGTTTTGGCCTAATAACAACAGCAGAATGTATGTACTTGAAAATACTGGGGAATTTGTTAACGCACATGGCTTACAGCTTGGAGATTTTATCATGGTTTACCAAGATAATCAAAACCAGAATTACGTCATTCAGGCTAAGAAGGCTTCTGACCAAGATCATGTGTATGGTGACATAAGCACTATGAACAACGGCGTGAACGATCTCTTCCTTGACGAATCTGAGGCGAACAAGTCGAGTTCGTTTTACATGCCCACAATGGCAATGGATGAAGATACAACTGCAGGCATGTCATTTGTTTATGACACCACCACCTTCTCAAATGACTCTCTGCTTGATTTTTTTGGGGGATCGATGACCAACTATTCCAGAAATGGGCCTCTGCATGAAAGTTTTGGTTCTGTTGAAAACTTGTCCCTTGATGACTACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

318

Amino Acids

35.51

Weight (kDa)

5.71

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	59
AasI	GACNNNNNNGTC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	59
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	3 cut(s)	141, 332, 877
AcsI	RAATTY	2 cut(s)	465, 572
AcvI	CACGTG	2 cut(s)	286, 329
AfaI	GTAC	2 cut(s)	518, 555
AfiI	CCNNNNNNNGG	3 cut(s)	126, 222, 894
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	514, 560, 926
AhlI	ACTAGT	1 cut(s)	182
AluBI	AGCT	7 cut(s)	23, 141, 373, 393, 428, 510, 598
AluI	AGCT	7 cut(s)	23, 141, 373, 393, 428, 510, 598
Alw21I	GWGCWC	1 cut(s)	395
AlwI	GGATC	3 cut(s)	141, 332, 877
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	5 cut(s)	25, 51, 88, 527, 896
ApeKI	GCWGC	5 cut(s)	17, 20, 141, 289, 425
ApoI	RAATTY	2 cut(s)	465, 572
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	10, 896
AsuHPI	GGTGA	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	395
BbrPI	CACGTG	2 cut(s)	286, 329
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	395
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	5 cut(s)	29, 32, 128, 276, 437
BccI	CCATC	3 cut(s)	155, 242, 485
BceAI	ACGGC	1 cut(s)	727
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	801
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	5 cut(s)	18, 21, 142, 290, 426
BlsI	GCNGC	5 cut(s)	19, 22, 143, 291, 427
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 896
BmrI	ACTGGG	1 cut(s)	576
BmuI	ACTGGG	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	872
BsaAI	YACGTR	2 cut(s)	286, 329
BsaJI	CCNNGG	2 cut(s)	48, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 222, 894
Bse1I	ACTGG	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	789
BseCI	ATCGAT	1 cut(s)	872
BseDI	CCNNGG	2 cut(s)	48, 102
BseGI	GGATG	4 cut(s)	147, 230, 487, 793
BseLI	CCNNNNNNNGG	3 cut(s)	126, 222, 894
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	412, 420, 732
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	5 cut(s)	29, 32, 128, 276, 437
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	5 cut(s)	27, 53, 90, 529, 898
BshVI	ATCGAT	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	122, 919
BslI	CCNNNNNNNGG	3 cut(s)	126, 222, 894
BsmFI	GGGAC	2 cut(s)	122, 919
BsnI	GGCC	5 cut(s)	27, 53, 90, 529, 898
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	5 cut(s)	27, 53, 90, 529, 898
BspCNI	CTCAG	3 cut(s)	411, 421, 733
BspDI	ATCGAT	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	805
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	141, 332, 877
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	48, 102
BssMI	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
BssT1I	CCWWGG	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	731
BstAFI	CTTAAG	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstBAI	YACGTR	2 cut(s)	286, 329
BstC8I	GCNNGC	3 cut(s)	25, 324, 805
BstDEI	CTNAG	4 cut(s)	398, 429, 657, 741
BstF5I	GGATG	4 cut(s)	147, 230, 487, 793
BstKTI	GATC	7 cut(s)	85, 136, 230, 340, 679, 724, 872
BstMBI	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 431, 662
BstNSI	RCATGY	2 cut(s)	772, 811
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	5 cut(s)	29, 32, 128, 276, 437
BstV2I	GAAGAC	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	872
BsuRI	GGCC	5 cut(s)	27, 53, 90, 529, 898
BsuTUI	ATCGAT	1 cut(s)	872
BtsCI	GGATG	4 cut(s)	147, 230, 487, 793
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	3 cut(s)	25, 324, 805
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	10, 896
ClaI	ATCGAT	1 cut(s)	872
Csp6I	GTAC	2 cut(s)	517, 554
CviQI	GTAC	2 cut(s)	517, 554
DdeI	CTNAG	4 cut(s)	398, 429, 657, 741
DpnI	GATC	7 cut(s)	84, 135, 229, 339, 678, 723, 871
DpnII	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	731
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	393
Eco72I	CACGTG	2 cut(s)	286, 329
EcoICRI	GAGCTC	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	102
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	122, 919
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	5 cut(s)	18, 21, 142, 290, 426
FokI	GGATG	4 cut(s)	134, 217, 494, 800
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	5 cut(s)	18, 21, 142, 290, 426
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	5 cut(s)	18, 21, 142, 290, 426
HaeIII	GGCC	5 cut(s)	27, 53, 90, 529, 898
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	3 cut(s)	452, 737, 845
HpaI	GTTAAC	1 cut(s)	580
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	4 cut(s)	196, 580, 619, 718
Hpy188I	TCNGA	5 cut(s)	133, 138, 401, 670, 742
Hpy188III	TCNNGA	2 cut(s)	38, 888
Hpy8I	GTNNAC	4 cut(s)	196, 580, 619, 718
HpyAV	CCTTC	4 cut(s)	254, 455, 655, 844
HpyCH4IV	ACGT	3 cut(s)	285, 328, 645
HpyCH4V	TGCA	3 cut(s)	326, 803, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 431, 662
HpyF3I	CTNAG	4 cut(s)	398, 429, 657, 741
HpySE526I	ACGT	3 cut(s)	285, 328, 645
KspAI	GTTAAC	1 cut(s)	580
Kzo9I	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
LmnI	GCTCC	4 cut(s)	138, 149, 370, 507
Lsp1109I	GCAGC	5 cut(s)	29, 32, 128, 276, 437
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	3 cut(s)	285, 328, 645
MaeIII	GTNAC	3 cut(s)	94, 178, 689
MalI	GATC	7 cut(s)	84, 135, 229, 339, 678, 723, 871
MboI	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
MboII	GAAGA	5 cut(s)	214, 414, 488, 718, 803
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	4 cut(s)	30, 465, 572, 640
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	3 cut(s)	111, 325, 365
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	3 cut(s)	375, 579, 952
MslI	CAYNNNNRTG	2 cut(s)	156, 684
MspA1I	CMGCKG	2 cut(s)	23, 428
MspCI	CTTAAG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	289, 431, 662
NdeII	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	94, 178, 689
NspI	RCATGY	2 cut(s)	772, 811
PagI	TCATGA	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	452, 737
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	19, 22, 143, 291, 427
PleI	GAGTC	1 cut(s)	839
PmaCI	CACGTG	2 cut(s)	286, 329
PmlI	CACGTG	2 cut(s)	286, 329
PpsI	GAGTC	1 cut(s)	839
Ppu21I	YACGTR	2 cut(s)	286, 329
Psp124BI	GAGCTC	1 cut(s)	395
PspCI	CACGTG	2 cut(s)	286, 329
PspPI	GGNCC	2 cut(s)	10, 896
PstI	CTGCAG	1 cut(s)	805
PstNI	CAGNNNCTG	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	2 cut(s)	23, 428
RsaI	GTAC	2 cut(s)	518, 555
RsaNI	GTAC	2 cut(s)	517, 554
RseI	CAYNNNNRTG	2 cut(s)	156, 684
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	375, 579, 952
SatI	GCNGC	5 cut(s)	18, 21, 142, 290, 426
Sau3AI	GATC	7 cut(s)	82, 133, 227, 337, 676, 721, 869
Sau96I	GGNCC	2 cut(s)	10, 896
SchI	GAGTC	1 cut(s)	839
SduI	GDGCHC	1 cut(s)	395
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	156, 684
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	4 cut(s)	30, 465, 572, 640
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	102
TaiI	ACGT	3 cut(s)	288, 331, 648
TaqI	TCGA	3 cut(s)	450, 755, 872
TasI	AATT	4 cut(s)	30, 465, 572, 640
TatI	WGTACW	2 cut(s)	516, 553
TfiI	GAWTC	2 cut(s)	452, 737
Tru1I	TTAA	3 cut(s)	375, 579, 952
Tru9I	TTAA	3 cut(s)	375, 579, 952
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	3 cut(s)	94, 178, 689
TseI	GCWGC	5 cut(s)	17, 20, 141, 289, 425
Tsp45I	GTSAC	3 cut(s)	94, 178, 689
TspDTI	ATGAA	6 cut(s)	23, 236, 488, 719, 804, 921
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	2 cut(s)	465, 572
XceI	RCATGY	2 cut(s)	772, 811
XcmI	CCANNNNNNNNNTGG	2 cut(s)	20, 781
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.