Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Forward (+)

88205087 .. 88208137

Gene Structure 3051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54336

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATGATGGACCAAACCCACGCCGCCCTTCACAGCAAAACCGAGGCCTTTGCCTTGAGGGCAGGTGTTAACGAGCACGGCTTTCTCACTCGTCATGATGATCAGGAGGTTGACAACAACAACAGCAACAAGAAGCACGACAACAACGTCAACTCCTTTCAAGGGTCGGATCGTCCCGGGTCGATCCGTGACCTTGTTCGTGCCGTCTCAACTTCTGGTGTGCAGAGGAAGAAACGGATGATGAGGCAGAGGCGAGCCACCACCATCAACTTTCAGCTCTCTTTTGCCACCCCCAGCTCTCACGTGCTCCCTTCCACTTCCCCACCTGCACGTGTAACTGATCCTGCAAGGTTGAGATTTCTTTTCCAAAAGGAACTTAAGAACAGTGATGTGAGCACTCTCAGAAGGGTGGTACTCCCTAAGACAACTGCAAAATTTGGAGCTTCATTTACTCATGGGCCGAATGACATTGATTTATTTAATATCAATGTTGGTATTGTATTTCAGAAAGCAGCTGAGGCTCATCTCCCAGCCCTGGAGTCTAAGGAAGGGATTTCTATCAGCATGGATGACATAGATGGTCTGCATGTTTGGAGCTTTAAATTTTGGCCTAACAACAACAGCCGCATGTATGTGCTCGAGAATACTGGGGAATTCGTTAGCACACATGGCTTGCAACTTGGAGATTTCATCATGGTTTATCAAGATAGTGCAAACCACAATTATGCTAAAAAGGCCAACTCTGTCCAAGATAATGATGAAGAAGATGAAACTGTATATGGAGTGGAAGAAACTATGAACAATGCTGTGAATGAGCTCATGATTTATGACTCGCTCCCTGATCAGGCTAACAAGTCTAGCTCGTTTTACATGCCGACAATGGATCATGATCACATGCAGGATGTTAATGCAGGCATGTCATTTGTGTATGACACCACTGCCTTCTCAAACGACTCTCTCCTTGATTTTTTGGGTGGATCCATGACCAACTATTCCAGATCAAATGGACGTCTGCAGGAAAATTTTGGGTCTGTTGAGAACCTGTCTCTTGATGACTTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

354

Amino Acids

39.81

Weight (kDa)

5.42

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	122 - 235	4.8e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	53, 334
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	1012
Acc36I	ACCTGC	2 cut(s)	53, 334
AciI	CCGC	2 cut(s)	24, 625
AclWI	GGATC	6 cut(s)	177, 178, 335, 891, 972, 985
AcsI	RAATTY	4 cut(s)	434, 602, 653, 1021
AcvI	CACGTG	2 cut(s)	304, 332
AcyI	GRCGYC	1 cut(s)	1009
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	162, 535, 844
AflII	CTTAAG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	7 cut(s)	277, 297, 443, 515, 597, 817, 861
AluI	AGCT	7 cut(s)	277, 297, 443, 515, 597, 817, 861
Alw21I	GWGCWC	5 cut(s)	78, 309, 398, 639, 819
Alw26I	GTCTC	2 cut(s)	211, 1050
AlwI	GGATC	6 cut(s)	177, 178, 335, 891, 972, 985
Ama87I	CYCGRG	2 cut(s)	176, 638
AoxI	GGCC	4 cut(s)	45, 458, 608, 735
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	4 cut(s)	434, 602, 653, 1021
AspS9I	GGNCC	2 cut(s)	10, 458
AsuC2I	CCSGG	2 cut(s)	177, 178
AvaI	CYCGRG	2 cut(s)	176, 638
AvaII	GGWCC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	977
BanII	GRGCYC	1 cut(s)	819
BbrPI	CACGTG	2 cut(s)	304, 332
Bbv12I	GWGCWC	5 cut(s)	78, 309, 398, 639, 819
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	2 cut(s)	272, 572
BceAI	ACGGC	2 cut(s)	94, 188
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	536
BclI	TGATCA	3 cut(s)	100, 841, 889
BcnI	CCSGG	2 cut(s)	177, 178
BcoDI	GTCTC	2 cut(s)	211, 1050
BfaI	CTAG	1 cut(s)	858
BfmI	CTRYAG	1 cut(s)	1013
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	2 cut(s)	53, 334
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	24, 513, 625
BlsI	GCNGC	3 cut(s)	25, 514, 626
Bme1390I	CCNGG	3 cut(s)	177, 178, 536
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	2 cut(s)	176, 638
BmgT120I	GGNCC	2 cut(s)	10, 458
BmiI	GGNNCC	1 cut(s)	979
BmrFI	CCNGG	3 cut(s)	177, 178, 536
BmrI	ACTGGG	1 cut(s)	657
BmuI	ACTGGG	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	2 cut(s)	177, 178
BsaAI	YACGTR	2 cut(s)	304, 332
BsaBI	GATNNNNATC	2 cut(s)	557, 888
BsaHI	GRCGYC	1 cut(s)	1009
BsaJI	CCNNGG	3 cut(s)	42, 176, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 535, 844
Bse1I	ACTGG	1 cut(s)	652
Bse8I	GATNNNNATC	2 cut(s)	557, 888
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	42, 176, 534
BseGI	GGATG	3 cut(s)	243, 574, 907
BseJI	GATNNNNATC	2 cut(s)	557, 888
BseLI	CCNNNNNNNGG	3 cut(s)	162, 535, 844
BseMII	CTCAG	2 cut(s)	415, 507
BseNI	ACTGG	1 cut(s)	652
BseXI	GCAGC	1 cut(s)	524
BseYI	CCCAGC	2 cut(s)	293, 529
BsgI	GTGCAG	2 cut(s)	242, 312
BshFI	GGCC	4 cut(s)	47, 460, 610, 737
BsiHKAI	GWGCWC	5 cut(s)	78, 309, 398, 639, 819
BsiHKCI	CYCGRG	2 cut(s)	176, 638
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	3 cut(s)	162, 535, 844
BsmAI	GTCTC	2 cut(s)	211, 1050
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	4 cut(s)	47, 460, 610, 737
BsoBI	CYCGRG	2 cut(s)	176, 638
Bsp1286I	GDGCHC	5 cut(s)	78, 309, 398, 639, 819
Bsp143I	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
BspACI	CCGC	2 cut(s)	24, 625
BspANI	GGCC	4 cut(s)	47, 460, 610, 737
BspCNI	CTCAG	2 cut(s)	414, 508
BspHI	TCATGA	3 cut(s)	94, 819, 886
BspLI	GGNNCC	1 cut(s)	979
BspMAI	CTGCAG	1 cut(s)	1017
BspMI	ACCTGC	2 cut(s)	53, 334
BspPI	GGATC	6 cut(s)	177, 178, 335, 891, 972, 985
BspTI	CTTAAG	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	3 cut(s)	42, 176, 534
BssMI	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
BssNI	GRCGYC	1 cut(s)	1009
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	386, 775
BstACI	GRCGYC	1 cut(s)	1009
BstAFI	CTTAAG	1 cut(s)	377
BstBAI	YACGTR	2 cut(s)	304, 332
BstC8I	GCNNGC	3 cut(s)	255, 674, 913
BstDEI	CTNAG	4 cut(s)	401, 420, 516, 543
BstF5I	GGATG	3 cut(s)	243, 574, 907
BstKTI	GATC	9 cut(s)	103, 172, 186, 343, 844, 886, 892, 980, 1001
BstMAI	GTCTC	2 cut(s)	211, 1050
BstMBI	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 518, 669, 734
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	5 cut(s)	590, 631, 874, 898, 919
BstSCI	CCNGG	3 cut(s)	175, 176, 534
BstSFI	CTRYAG	1 cut(s)	1013
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	977
BstYI	RGATCY	1 cut(s)	977
BsuRI	GGCC	4 cut(s)	47, 460, 610, 737
BtsCI	GGATG	3 cut(s)	243, 574, 907
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	2 cut(s)	391, 936
BveI	ACCTGC	2 cut(s)	53, 334
Cac8I	GCNNGC	3 cut(s)	255, 674, 913
CciI	TCATGA	3 cut(s)	94, 819, 886
Cfr13I	GGNCC	2 cut(s)	10, 458
Cfr9I	CCCGGG	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	413
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	401, 420, 516, 543
DpnI	GATC	9 cut(s)	102, 171, 185, 342, 843, 885, 891, 979, 1000
DpnII	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
DraI	TTTAAA	1 cut(s)	601
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	817
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	817
Eco72I	CACGTG	2 cut(s)	304, 332
Eco88I	CYCGRG	2 cut(s)	176, 638
EcoICRI	GAGCTC	1 cut(s)	817
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	819
Esp3I	CGTCTC	1 cut(s)	211
FaqI	GGGAC	1 cut(s)	159
FbaI	TGATCA	3 cut(s)	100, 841, 889
Fnu4HI	GCNGC	3 cut(s)	24, 513, 625
FokI	GGATG	3 cut(s)	250, 581, 914
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	3 cut(s)	24, 513, 625
FspBI	CTAG	1 cut(s)	858
GluI	GCNGC	3 cut(s)	24, 513, 625
GsaI	CCCAGC	2 cut(s)	297, 533
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	4 cut(s)	47, 460, 610, 737
HapII	CCGG	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	1009
HincII	GTYRAC	3 cut(s)	70, 112, 151
HindII	GTYRAC	3 cut(s)	70, 112, 151
HinfI	GANTC	3 cut(s)	539, 830, 953
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	3 cut(s)	70, 112, 151
Hpy188I	TCNGA	3 cut(s)	169, 404, 507
Hpy188III	TCNNGA	8 cut(s)	95, 104, 640, 704, 820, 887, 996, 1049
Hpy8I	GTNNAC	3 cut(s)	70, 112, 151
HpyAV	CCTTC	5 cut(s)	38, 321, 399, 542, 952
HpyCH4III	ACNGT	2 cut(s)	386, 775
HpyCH4IV	ACGT	4 cut(s)	147, 303, 331, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 518, 669, 734
HpyF3I	CTNAG	4 cut(s)	401, 420, 516, 543
HpySE526I	ACGT	4 cut(s)	147, 303, 331, 1009
Hsp92I	GRCGYC	1 cut(s)	1009
Ksp22I	TGATCA	3 cut(s)	100, 841, 889
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
LmnI	GCTCC	4 cut(s)	312, 440, 594, 840
Lsp1109I	GCAGC	1 cut(s)	524
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	4 cut(s)	147, 303, 331, 1009
MaeIII	GTNAC	2 cut(s)	188, 334
MalI	GATC	9 cut(s)	102, 171, 185, 342, 843, 885, 891, 979, 1000
MboI	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
MboII	GAAGA	4 cut(s)	241, 773, 776, 800
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	5 cut(s)	78, 309, 398, 639, 819
MluCI	AATT	5 cut(s)	434, 602, 653, 721, 1021
MlyI	GAGTC	3 cut(s)	548, 824, 947
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	37, 51, 100, 219, 237, 243, 511
MseI	TTAA	6 cut(s)	69, 378, 480, 600, 906, 1063
MslI	CAYNNNNRTG	2 cut(s)	632, 723
MspA1I	CMGCKG	1 cut(s)	515
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	177, 178, 536
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	4 cut(s)	59, 518, 669, 734
NciI	CCSGG	2 cut(s)	177, 178
NdeII	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
NlaIV	GGNNCC	1 cut(s)	979
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	5 cut(s)	590, 631, 874, 898, 919
PaeR7I	CTCGAG	1 cut(s)	638
PagI	TCATGA	3 cut(s)	94, 819, 886
PaqCI	CACCTGC	2 cut(s)	53, 334
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	25, 514, 626
PleI	GAGTC	3 cut(s)	547, 824, 947
PmaCI	CACGTG	2 cut(s)	304, 332
PmlI	CACGTG	2 cut(s)	304, 332
PpsI	GAGTC	3 cut(s)	547, 824, 947
Ppu21I	YACGTR	2 cut(s)	304, 332
Psp124BI	GAGCTC	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	534
PspCI	CACGTG	2 cut(s)	304, 332
PspFI	CCCAGC	2 cut(s)	293, 529
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	979
PspPI	GGNCC	2 cut(s)	10, 458
PstI	CTGCAG	1 cut(s)	1017
PsuI	RGATCY	1 cut(s)	977
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	2 cut(s)	632, 723
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	6 cut(s)	69, 378, 480, 600, 906, 1063
SatI	GCNGC	3 cut(s)	24, 513, 625
Sau3AI	GATC	9 cut(s)	100, 169, 183, 340, 841, 883, 889, 977, 998
Sau96I	GGNCC	2 cut(s)	10, 458
SchI	GAGTC	3 cut(s)	548, 824, 947
ScrFI	CCNGG	3 cut(s)	177, 178, 536
SduI	GDGCHC	5 cut(s)	78, 309, 398, 639, 819
SfcI	CTRYAG	1 cut(s)	1013
Sfr274I	CTCGAG	1 cut(s)	638
SinI	GGWCC	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	638
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	632, 723
SmlI	CTYRAG	3 cut(s)	55, 377, 638
SmoI	CTYRAG	3 cut(s)	55, 377, 638
Sse9I	AATT	5 cut(s)	434, 602, 653, 721, 1021
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	24, 625
SspMI	CTAG	1 cut(s)	858
SstI	GAGCTC	1 cut(s)	819
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	175, 176, 534
TaaI	ACNGT	2 cut(s)	386, 775
TaiI	ACGT	4 cut(s)	150, 306, 334, 1012
TaqI	TCGA	2 cut(s)	182, 639
TasI	AATT	5 cut(s)	434, 602, 653, 721, 1021
TauI	GCSGC	2 cut(s)	26, 627
Tru1I	TTAA	6 cut(s)	69, 378, 480, 600, 906, 1063
Tru9I	TTAA	6 cut(s)	69, 378, 480, 600, 906, 1063
TscAI	CASTG	2 cut(s)	391, 943
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	5 cut(s)	435, 679, 774, 783, 812
TspGWI	ACGGA	2 cut(s)	176, 250
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	2 cut(s)	391, 943
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	4 cut(s)	434, 602, 653, 1021
XceI	RCATGY	5 cut(s)	590, 631, 874, 898, 919
XhoI	CTCGAG	1 cut(s)	638
XmaI	CCCGGG	1 cut(s)	176
XspI	CTAG	1 cut(s)	858
ZraI	GACGTC	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.