Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Forward (+)

39562864 .. 39566656

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATGATGGACCAAACGCACGCCGCCCTCCACAGCAAAACCGAGGCCTTTGCTTTGAGGGCAGGTGTTAACGAGCTCGGCTTTCTCACTCGTGATCCTCACCAGGTTGACAACAACAACAAGAACAAGAACGTCAACTCCTCCTTTCACGGGTCGGGTCGTCCCGGGTCGATCCGTGACCTTGTTCATGCCGTCTCCACTTTTGGTGTGCAGAGGAAGAAACGGATGGTGAGGCAGAGGCGAGCCACCACCTTCAACTTTCAGCTCTCTTTTGCCAGCCCCAGTTCTCACGTGCGCCCTTCCCCACCTGCACGTGTAACTGATCCTGCAAAGTTGAGATTTCTTTTCCAAAAGGAACTTAAGAACAGTGATGTGAGCTCTCTCAGACGGGTGGTACTCCCTAAGAAAGCCGCTGAGGCTCATCTCCCACCCCTGGATTTCAAGGAAGGGATTCCTATCAGCATGGATGACATGGATGGTCTGCATGTTTGGAGCTTTAAGTACAGATTTTGGCCAAACAACAATAGTCGCATGTACGTGCTTGAGAATACTGGGGAATTTGTTAGCACACATGGCTTACAGCTTGGAGATTTTATCATGGTCTATCAAGATAGTGCAAACCAGAATTATGTCATTCAAGCTAAGAAGGCCAACTCTGACCAAGATGATGATGATGACAACGATGAGGATACTGTATATGGAGTGGAACAAACTATGAACAATGCTGTGAATGAGCTCATGATTTATGACTCGGTCCCTGATCAGGCTAACAAGTGGAGCTCGTTTTACATGCCGACAATGGATCAAGATCATATGCAGGATGTTAATGCAGGCATGTCATTTGTCTATGACACCACTGCGTTCTCAAACGACTCTCTCCTTGATTTTCTGGGTGGATCCATGACCAACTATTCCAGATCAAACGGACGTGTGCAGGAGAATTTCGGGTCTGTTGAGAACCTGTCTCTTGACGAGTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

328

Amino Acids

37.1

Weight (kDa)

5.56

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	116 - 214	8.7e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	53, 316
Acc36I	ACCTGC	2 cut(s)	53, 316
AciI	CCGC	2 cut(s)	24, 411
AclWI	GGATC	6 cut(s)	89, 166, 317, 810, 891, 904
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	557, 940
AcvI	CACGTG	2 cut(s)	292, 314
AfaI	GTAC	3 cut(s)	396, 503, 536
AfiI	CCNNNNNNNGG	3 cut(s)	150, 433, 763
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	2 cut(s)	313, 928
AgsI	TTSAA	3 cut(s)	256, 442, 638
AjiI	CACGTC	1 cut(s)	929
AjnI	CCWGG	2 cut(s)	102, 432
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	8 cut(s)	76, 265, 378, 495, 583, 641, 736, 780
AluI	AGCT	8 cut(s)	76, 265, 378, 495, 583, 641, 736, 780
Alw21I	GWGCWC	4 cut(s)	78, 380, 738, 782
Alw26I	GTCTC	2 cut(s)	199, 969
AlwI	GGATC	6 cut(s)	89, 166, 317, 810, 891, 904
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	45, 512, 648
ApoI	RAATTY	2 cut(s)	557, 940
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	10, 754
AsuC2I	CCSGG	2 cut(s)	165, 166
AsuHPI	GGTGA	2 cut(s)	92, 241
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	10, 754
BalI	TGGCCA	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	896
BanII	GRGCYC	4 cut(s)	78, 380, 738, 782
BauI	CACGAG	1 cut(s)	90
BbrPI	CACGTG	2 cut(s)	292, 314
Bbv12I	GWGCWC	4 cut(s)	78, 380, 738, 782
BbvCI	CCTCAGC	1 cut(s)	414
BccI	CCATC	2 cut(s)	220, 470
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	104, 434
BciVI	GTATCC	1 cut(s)	682
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	2 cut(s)	165, 166
BcoDI	GTCTC	2 cut(s)	199, 969
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	2 cut(s)	53, 316
BfuI	GTATCC	1 cut(s)	682
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	2 cut(s)	24, 411
BlsI	GCNGC	2 cut(s)	25, 412
Bme1390I	CCNGG	4 cut(s)	104, 165, 166, 434
Bme18I	GGWCC	2 cut(s)	10, 754
BmeT110I	CYCGRG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	929
BmgT120I	GGNCC	2 cut(s)	10, 754
BmiI	GGNNCC	2 cut(s)	756, 898
BmrFI	CCNGG	4 cut(s)	104, 165, 166, 434
BmrI	ACTGGG	2 cut(s)	276, 561
BmuI	ACTGGG	2 cut(s)	276, 561
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	2 cut(s)	165, 166
BsaAI	YACGTR	3 cut(s)	292, 314, 538
BsaBI	GATNNNNATC	2 cut(s)	455, 807
BsaJI	CCNNGG	3 cut(s)	42, 164, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 433, 763
Bse1I	ACTGG	2 cut(s)	282, 556
Bse8I	GATNNNNATC	2 cut(s)	455, 807
BseBI	CCWGG	2 cut(s)	104, 434
BseDI	CCNNGG	3 cut(s)	42, 164, 432
BseGI	GGATG	4 cut(s)	231, 472, 481, 826
BseJI	GATNNNNATC	2 cut(s)	455, 807
BseLI	CCNNNNNNNGG	3 cut(s)	150, 433, 763
BseMII	CTCAG	2 cut(s)	397, 405
BseNI	ACTGG	2 cut(s)	282, 556
BseRI	GAGGAG	1 cut(s)	130
BsgI	GTGCAG	3 cut(s)	230, 294, 953
BshFI	GGCC	3 cut(s)	47, 514, 650
BsiHKAI	GWGCWC	4 cut(s)	78, 380, 738, 782
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	147, 740
BslI	CCNNNNNNNGG	3 cut(s)	150, 433, 763
BsmAI	GTCTC	2 cut(s)	199, 969
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	147, 740
BsnI	GGCC	3 cut(s)	47, 514, 650
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	4 cut(s)	78, 380, 738, 782
Bsp143I	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
BspACI	CCGC	2 cut(s)	24, 411
BspANI	GGCC	3 cut(s)	47, 514, 650
BspCNI	CTCAG	2 cut(s)	396, 406
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	756, 898
BspMI	ACCTGC	2 cut(s)	53, 316
BspPI	GGATC	6 cut(s)	89, 166, 317, 810, 891, 904
BspTI	CTTAAG	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	282, 556
BssECI	CCNNGG	3 cut(s)	42, 164, 432
BssMI	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	104, 434
Bst4CI	ACNGT	2 cut(s)	368, 694
BstAFI	CTTAAG	1 cut(s)	359
BstBAI	YACGTR	3 cut(s)	292, 314, 538
BstC8I	GCNNGC	4 cut(s)	21, 243, 277, 832
BstDEI	CTNAG	4 cut(s)	383, 402, 414, 642
BstF5I	GGATG	4 cut(s)	231, 472, 481, 826
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	8 cut(s)	97, 174, 325, 763, 805, 811, 899, 920
BstMAI	GTCTC	2 cut(s)	199, 969
BstMBI	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 416, 573, 647
BstNI	CCWGG	2 cut(s)	104, 434
BstNSI	RCATGY	4 cut(s)	488, 535, 793, 838
BstSCI	CCNGG	4 cut(s)	102, 163, 164, 432
BstX2I	RGATCY	1 cut(s)	896
BstYI	RGATCY	1 cut(s)	896
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	3 cut(s)	47, 514, 650
BtrI	CACGTC	1 cut(s)	929
BtsCI	GGATG	4 cut(s)	231, 472, 481, 826
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	373, 855
BveI	ACCTGC	2 cut(s)	53, 316
Cac8I	GCNNGC	4 cut(s)	21, 243, 277, 832
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	10, 754
Cfr9I	CCCGGG	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	395, 502, 535
CviQI	GTAC	3 cut(s)	395, 502, 535
DdeI	CTNAG	4 cut(s)	383, 402, 414, 642
DpnI	GATC	8 cut(s)	96, 173, 324, 762, 804, 810, 898, 919
DpnII	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
EaeI	YGGCCR	1 cut(s)	512
Ecl136II	GAGCTC	4 cut(s)	76, 378, 736, 780
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	4 cut(s)	78, 380, 738, 782
Eco47I	GGWCC	2 cut(s)	10, 754
Eco53kI	GAGCTC	4 cut(s)	76, 378, 736, 780
Eco72I	CACGTG	2 cut(s)	292, 314
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	4 cut(s)	76, 378, 736, 780
EcoRII	CCWGG	2 cut(s)	102, 432
EcoT38I	GRGCYC	4 cut(s)	78, 380, 738, 782
Esp3I	CGTCTC	1 cut(s)	199
FaqI	GGGAC	2 cut(s)	147, 740
FauNDI	CATATG	1 cut(s)	813
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	2 cut(s)	24, 411
FokI	GGATG	4 cut(s)	238, 479, 488, 833
FriOI	GRGCYC	4 cut(s)	78, 380, 738, 782
Fsp4HI	GCNGC	2 cut(s)	24, 411
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	2 cut(s)	24, 411
HaeIII	GGCC	3 cut(s)	47, 514, 650
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	3 cut(s)	70, 109, 136
HindII	GTYRAC	3 cut(s)	70, 109, 136
HinfI	GANTC	3 cut(s)	451, 749, 872
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	92, 241
Hpy166II	GTNNAC	3 cut(s)	70, 109, 136
Hpy188I	TCNGA	2 cut(s)	386, 658
Hpy188III	TCNNGA	6 cut(s)	92, 608, 739, 806, 915, 968
Hpy8I	GTNNAC	3 cut(s)	70, 109, 136
HpyAV	CCTTC	4 cut(s)	262, 309, 440, 640
HpyCH4III	ACNGT	2 cut(s)	368, 694
HpyCH4IV	ACGT	5 cut(s)	132, 291, 313, 537, 928
HpyCH4V	TGCA	8 cut(s)	211, 311, 329, 484, 617, 817, 830, 934
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 416, 573, 647
HpyF3I	CTNAG	4 cut(s)	383, 402, 414, 642
HpySE526I	ACGT	5 cut(s)	132, 291, 313, 537, 928
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	760
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
LmnI	GCTCC	2 cut(s)	492, 777
MabI	ACCWGGT	1 cut(s)	102
MaeII	ACGT	5 cut(s)	132, 291, 313, 537, 928
MaeIII	GTNAC	2 cut(s)	176, 316
MalI	GATC	8 cut(s)	96, 173, 324, 762, 804, 810, 898, 919
MboI	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	4 cut(s)	78, 380, 738, 782
MlsI	TGGCCA	1 cut(s)	514
MluCI	AATT	3 cut(s)	557, 625, 940
MluNI	TGGCCA	1 cut(s)	514
MlyI	GAGTC	2 cut(s)	743, 866
Mox20I	TGGCCA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	514
MseI	TTAA	4 cut(s)	69, 360, 498, 825
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	4 cut(s)	104, 165, 166, 434
MvaI	CCWGG	2 cut(s)	104, 434
MwoI	GCNNNNNNNGC	4 cut(s)	59, 416, 573, 647
NciI	CCSGG	2 cut(s)	165, 166
NdeI	CATATG	1 cut(s)	813
NdeII	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
NlaIV	GGNNCC	2 cut(s)	756, 898
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	4 cut(s)	488, 535, 793, 838
PagI	TCATGA	1 cut(s)	738
PaqCI	CACCTGC	2 cut(s)	53, 316
PceI	AGGCCT	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	451
PflFI	GACNNNGTC	1 cut(s)	752
PkrI	GCNGC	2 cut(s)	25, 412
PleI	GAGTC	2 cut(s)	743, 866
PmaCI	CACGTG	2 cut(s)	292, 314
PmlI	CACGTG	2 cut(s)	292, 314
PpsI	GAGTC	2 cut(s)	743, 866
Ppu21I	YACGTR	3 cut(s)	292, 314, 538
Psp124BI	GAGCTC	4 cut(s)	78, 380, 738, 782
Psp6I	CCWGG	2 cut(s)	102, 432
PspCI	CACGTG	2 cut(s)	292, 314
PspGI	CCWGG	2 cut(s)	102, 432
PspN4I	GGNNCC	2 cut(s)	756, 898
PspPI	GGNCC	2 cut(s)	10, 754
PsuI	RGATCY	1 cut(s)	896
PsyI	GACNNNGTC	1 cut(s)	752
RsaI	GTAC	3 cut(s)	396, 503, 536
RsaNI	GTAC	3 cut(s)	395, 502, 535
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	4 cut(s)	78, 380, 738, 782
SaqAI	TTAA	4 cut(s)	69, 360, 498, 825
SatI	GCNGC	2 cut(s)	24, 411
Sau3AI	GATC	8 cut(s)	94, 171, 322, 760, 802, 808, 896, 917
Sau96I	GGNCC	2 cut(s)	10, 754
SchI	GAGTC	2 cut(s)	743, 866
ScrFI	CCNGG	4 cut(s)	104, 165, 166, 434
SduI	GDGCHC	4 cut(s)	78, 380, 738, 782
SexAI	ACCWGGT	1 cut(s)	102
SinI	GGWCC	2 cut(s)	10, 754
SmaI	CCCGGG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	2 cut(s)	359, 542
SmoI	CTYRAG	2 cut(s)	359, 542
Sse9I	AATT	3 cut(s)	557, 625, 940
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	24, 411
SstI	GAGCTC	4 cut(s)	78, 380, 738, 782
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	4 cut(s)	102, 163, 164, 432
TaaI	ACNGT	2 cut(s)	368, 694
TaiI	ACGT	5 cut(s)	135, 294, 316, 540, 931
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	742
TasI	AATT	3 cut(s)	557, 625, 940
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	2 cut(s)	26, 413
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	4 cut(s)	69, 360, 498, 825
Tru9I	TTAA	4 cut(s)	69, 360, 498, 825
TscAI	CASTG	2 cut(s)	373, 862
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	176, 731
TspGWI	ACGGA	3 cut(s)	164, 238, 939
TspMI	CCCGGG	1 cut(s)	164
TspRI	CASTG	2 cut(s)	373, 862
Tth111I	GACNNNGTC	1 cut(s)	752
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	10, 754
XapI	RAATTY	2 cut(s)	557, 940
XceI	RCATGY	4 cut(s)	488, 535, 793, 838
XmaI	CCCGGG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.