Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Reverse (-)

376432 .. 378955

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1004700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACCAAACAGCGGCGGCAGCAGCTGTAGCAGGTGGCGGCCTTCGTGAGAAAACCGAGGCCTCTGGCTTGAGGGCAGGTGTAGGGGCTGAGCTCGGCCTTGTCATTGCCAAGGGGGACAAGGATAACCCGGATCACAAGAGTAAAGTTCACGGGTCGGAGCGGAGCGGATCGATCCATGACCTTGTCCGTGCTGTGACCAGTTTCGGTGTCCTCAGGAAGAAACGAATGACCAGACATAGGCGATCCTCCATCATCAACTTTCACGACCTCTCTTCTTTCGCTGGTGCTGCTTCCTCCAACCCCTTGCACGTGCTACCACCCCCCTCCACTCTCCCTCCTGCACGTGTAATTGATCCAACACGGTTGCGATTTCTTTTCCAAAAAGAGCTAAAGAATAGTGATGTGAGCTCTCTCAGAAGAATGATACTCCCCAAGAAAGCAGCCGAGGCTCATCTCCCTACCCTCGAATCAAAGGAAGGAATGGCAATCAACATGGATGACATAGATGGTCTGCATGTTTGGAGCTTCAAGTACAGGTTTTGGCCTAATAACAACAGCCGAATGTATGTACTTGAAAATACGGGTACATATCTCTGCCTTCTTTCCCTTATATCAAACATTTGGTTCTTATGTGAATTTGTTAATGCACATGGCTTACAGTTTGGAGATTATATCATGGTTTACCAAGACAATCACAACCAGAATTACGTCATTCAGGCAAGAAAGGCATCTGACCAAGATCATGTATACGGAGACATAAGTGGTATGAACATTGCGGTGAATGACCTCTATATGCAGGAGTCGAGTTCGTTTTACATGCCGAAAATGGAAGAGGATACGACTGCGGGCTTGTCATTTGTGTATGACACCACCACCTACTCAAACGACTCTCTGCTTGATTTTTCCGGGGGATCAATGATGACAAACTACTCCAGAAATGGGTCTCTGCATGAAAGTTTTGGATCTGTTGAGAACTTGTCTCTTGACGACTTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

334

Amino Acids

37.07

Weight (kDa)

6.17

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	127 - 244	8.3e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	23, 68
Acc36I	ACCTGC	2 cut(s)	23, 68
AccBSI	CCGCTC	2 cut(s)	163, 168
AccI	GTMKAC	1 cut(s)	750
AciI	CCGC	7 cut(s)	14, 17, 39, 163, 168, 779, 848
AclWI	GGATC	7 cut(s)	141, 169, 178, 240, 350, 922, 973
AcsI	RAATTY	1 cut(s)	638
AcvI	CACGTG	2 cut(s)	313, 347
AfaI	GTAC	3 cut(s)	536, 573, 589
AfiI	CCNNNNNNNGG	3 cut(s)	13, 240, 942
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	532, 578
AluBI	AGCT	5 cut(s)	26, 94, 391, 411, 528
AluI	AGCT	5 cut(s)	26, 94, 391, 411, 528
Alw21I	GWGCWC	2 cut(s)	96, 413
Alw26I	GTCTC	3 cut(s)	750, 951, 987
AlwI	GGATC	7 cut(s)	141, 169, 178, 240, 350, 922, 973
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	4 cut(s)	40, 60, 97, 545
ApeKI	GCWGC	4 cut(s)	20, 23, 290, 443
ApoI	RAATTY	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	131, 910
AsuHPI	GGTGA	1 cut(s)	793
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	215
BanII	GRGCYC	2 cut(s)	96, 413
BbrPI	CACGTG	2 cut(s)	313, 347
Bbv12I	GWGCWC	2 cut(s)	96, 413
BbvI	GCAGC	4 cut(s)	32, 35, 277, 455
BccI	CCATC	2 cut(s)	260, 503
BciVI	GTATCC	1 cut(s)	832
BcnI	CCSGG	2 cut(s)	131, 910
BcoDI	GTCTC	3 cut(s)	750, 951, 987
BfmI	CTRYAG	1 cut(s)	27
BfuAI	ACCTGC	2 cut(s)	23, 68
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	7 cut(s)	15, 18, 21, 24, 40, 291, 444
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	7 cut(s)	16, 19, 22, 25, 41, 292, 445
Bme1390I	CCNGG	2 cut(s)	131, 910
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	131, 910
BmsI	GCATC	1 cut(s)	740
BpmI	CTGGAG	1 cut(s)	919
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	91
BpuMI	CCSGG	2 cut(s)	131, 910
Bsa29I	ATCGAT	1 cut(s)	173
BsaAI	YACGTR	2 cut(s)	313, 347
BsaI	GGTCTC	1 cut(s)	951
BsaJI	CCNNGG	4 cut(s)	57, 111, 447, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 240, 942
Bse1I	ACTGG	1 cut(s)	201
Bse21I	CCTNAGG	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	105, 774
BseCI	ATCGAT	1 cut(s)	173
BseDI	CCNNGG	4 cut(s)	57, 111, 447, 909
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	3 cut(s)	13, 240, 942
BseMI	GCAATG	2 cut(s)	105, 774
BseMII	CTCAG	3 cut(s)	81, 229, 430
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	32, 35, 277, 455
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	4 cut(s)	42, 62, 99, 547
BshVI	ATCGAT	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	96, 413
BsiSI	CCGG	2 cut(s)	131, 909
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	13, 240, 942
BsmAI	GTCTC	3 cut(s)	750, 951, 987
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	4 cut(s)	42, 62, 99, 547
Bso31I	GGTCTC	1 cut(s)	951
Bsp1286I	GDGCHC	2 cut(s)	96, 413
Bsp143I	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	7 cut(s)	14, 17, 39, 163, 168, 779, 848
BspANI	GGCC	4 cut(s)	42, 62, 99, 547
BspCNI	CTCAG	3 cut(s)	82, 228, 429
BspDI	ATCGAT	1 cut(s)	173
BspMI	ACCTGC	2 cut(s)	23, 68
BspPI	GGATC	7 cut(s)	141, 169, 178, 240, 350, 922, 973
BspTNI	GGTCTC	1 cut(s)	951
BsrBI	CCGCTC	2 cut(s)	163, 168
BsrDI	GCAATG	2 cut(s)	105, 774
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	4 cut(s)	57, 111, 447, 909
BssMI	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
BssNAI	GTATAC	1 cut(s)	751
BssT1I	CCWWGG	1 cut(s)	111
Bst1107I	GTATAC	1 cut(s)	751
Bst4CI	ACNGT	2 cut(s)	366, 663
Bst6I	CTCTTC	2 cut(s)	280, 828
BstBAI	YACGTR	2 cut(s)	313, 347
BstC8I	GCNNGC	1 cut(s)	850
BstDEI	CTNAG	3 cut(s)	90, 215, 416
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	8 cut(s)	136, 173, 177, 248, 358, 745, 917, 968
BstMAI	GTCTC	3 cut(s)	750, 951, 987
BstMBI	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 23, 29, 290, 449, 728
BstNSI	RCATGY	2 cut(s)	521, 823
BstSCI	CCNGG	2 cut(s)	129, 908
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	32, 35, 277, 455
BstX2I	RGATCY	1 cut(s)	965
BstYI	RGATCY	1 cut(s)	965
BstZ17I	GTATAC	1 cut(s)	751
Bsu15I	ATCGAT	1 cut(s)	173
Bsu36I	CCTNAGG	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	4 cut(s)	42, 62, 99, 547
BsuTUI	ATCGAT	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	505
BveI	ACCTGC	2 cut(s)	23, 68
Cac8I	GCNNGC	1 cut(s)	850
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	173
Csp6I	GTAC	3 cut(s)	535, 572, 588
CviAII	CATG	8 cut(s)	179, 496, 518, 653, 679, 746, 820, 953
CviQI	GTAC	3 cut(s)	535, 572, 588
DdeI	CTNAG	3 cut(s)	90, 215, 416
DpnI	GATC	8 cut(s)	135, 172, 176, 247, 357, 744, 916, 967
DpnII	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
Eam1104I	CTCTTC	2 cut(s)	280, 828
EarI	CTCTTC	2 cut(s)	280, 828
Ecl136II	GAGCTC	2 cut(s)	94, 411
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	62
Eco24I	GRGCYC	2 cut(s)	96, 413
Eco31I	GGTCTC	1 cut(s)	951
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	2 cut(s)	94, 411
Eco72I	CACGTG	2 cut(s)	313, 347
Eco81I	CCTNAGG	1 cut(s)	215
EcoICRI	GAGCTC	2 cut(s)	94, 411
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	96, 413
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	8 cut(s)	182, 499, 521, 656, 682, 749, 823, 956
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	8 cut(s)	178, 495, 517, 652, 678, 745, 819, 952
FauI	CCCGC	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	7 cut(s)	15, 18, 21, 24, 40, 291, 444
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	2 cut(s)	96, 413
Fsp4HI	GCNGC	7 cut(s)	15, 18, 21, 24, 40, 291, 444
GluI	GCNGC	7 cut(s)	15, 18, 21, 24, 40, 291, 444
GsuI	CTGGAG	1 cut(s)	919
HaeIII	GGCC	4 cut(s)	42, 62, 99, 547
HapII	CCGG	2 cut(s)	131, 909
Hin1II	CATG	8 cut(s)	182, 499, 521, 656, 682, 749, 823, 956
HinfI	GANTC	3 cut(s)	470, 803, 890
HpaII	CCGG	2 cut(s)	131, 909
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	3 cut(s)	151, 685, 751
Hpy188I	TCNGA	3 cut(s)	160, 419, 736
Hpy188III	TCNNGA	5 cut(s)	47, 217, 266, 936, 986
Hpy8I	GTNNAC	3 cut(s)	151, 685, 751
HpyAV	CCTTC	3 cut(s)	53, 473, 611
HpyCH4III	ACNGT	2 cut(s)	366, 663
HpyCH4IV	ACGT	3 cut(s)	312, 346, 711
HpyCH4V	TGCA	6 cut(s)	310, 344, 517, 650, 799, 952
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 23, 29, 290, 449, 728
HpyF3I	CTNAG	3 cut(s)	90, 215, 416
HpySE526I	ACGT	3 cut(s)	312, 346, 711
Hsp92II	CATG	8 cut(s)	182, 499, 521, 656, 682, 749, 823, 956
Kzo9I	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
LmnI	GCTCC	3 cut(s)	160, 165, 525
Lsp1109I	GCAGC	4 cut(s)	32, 35, 277, 455
LweI	GCATC	1 cut(s)	740
MaeII	ACGT	3 cut(s)	312, 346, 711
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	8 cut(s)	135, 172, 176, 247, 357, 744, 916, 967
MbiI	CCGCTC	2 cut(s)	163, 168
MboI	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
MboII	GAAGA	4 cut(s)	232, 267, 432, 845
MflI	RGATCY	1 cut(s)	965
MhlI	GDGCHC	2 cut(s)	96, 413
MluCI	AATT	3 cut(s)	351, 638, 706
MlyI	GAGTC	2 cut(s)	812, 884
MmeI	TCCRAC	3 cut(s)	138, 324, 383
MseI	TTAA	2 cut(s)	645, 1000
MslI	CAYNNNNRTG	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	14, 26
MspI	CCGG	2 cut(s)	131, 909
MspR9I	CCNGG	2 cut(s)	131, 910
MwoI	GCNNNNNNNGC	6 cut(s)	20, 23, 29, 290, 449, 728
NciI	CCSGG	2 cut(s)	131, 910
NdeII	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
NlaIII	CATG	8 cut(s)	182, 499, 521, 656, 682, 749, 823, 956
NmeAIII	GCCGAG	2 cut(s)	75, 472
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	2 cut(s)	521, 823
PaqCI	CACCTGC	2 cut(s)	23, 68
PceI	AGGCCT	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	470
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	7 cut(s)	16, 19, 22, 25, 41, 292, 445
PleI	GAGTC	2 cut(s)	811, 884
PmaCI	CACGTG	2 cut(s)	313, 347
PmlI	CACGTG	2 cut(s)	313, 347
PpsI	GAGTC	2 cut(s)	811, 884
Ppu21I	YACGTR	2 cut(s)	313, 347
Psp124BI	GAGCTC	2 cut(s)	96, 413
PspCI	CACGTG	2 cut(s)	313, 347
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	965
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	536, 573, 589
RsaNI	GTAC	3 cut(s)	535, 572, 588
RseI	CAYNNNNRTG	1 cut(s)	779
SacI	GAGCTC	2 cut(s)	96, 413
SaqAI	TTAA	2 cut(s)	645, 1000
SatI	GCNGC	7 cut(s)	15, 18, 21, 24, 40, 291, 444
Sau3AI	GATC	8 cut(s)	133, 170, 174, 245, 355, 742, 914, 965
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	812, 884
ScrFI	CCNGG	2 cut(s)	131, 910
SduI	GDGCHC	2 cut(s)	96, 413
SfaNI	GCATC	1 cut(s)	740
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	3 cut(s)	351, 638, 706
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	7 cut(s)	14, 17, 39, 163, 168, 779, 848
SstI	GAGCTC	2 cut(s)	96, 413
StuI	AGGCCT	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	129, 908
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	366, 663
TaiI	ACGT	3 cut(s)	315, 349, 714
TaqI	TCGA	3 cut(s)	173, 468, 806
TasI	AATT	3 cut(s)	351, 638, 706
TatI	WGTACW	2 cut(s)	534, 571
TauI	GCSGC	3 cut(s)	17, 20, 42
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	645, 1000
Tru9I	TTAA	2 cut(s)	645, 1000
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	4 cut(s)	20, 23, 290, 443
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	785, 969
TspGWI	ACGGA	2 cut(s)	179, 768
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	2 cut(s)	521, 823
XmiI	GTMKAC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.