Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014501

Physical Location & Seq

Genomic Coordinates Reverse (-)

557450 .. 560651

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1008700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGACCAAACAGCGGCGGCAGCAGCAGCAGCAGCTGTAGGTCTTCGTGAGAAAACCGAGGCCTCTGGCTTGAGGGCAGGTGTTGAGGCTGAGCTCGGCCTTGTCACTGCCAAGGGGAACAAGGATAACGCGGATCACAAGAGTACCTTTCACGGGTCGAATCGGAGCGGGTCGATCCATGACCTTGTCCGTGCTGTGACTAGTTTCGGTGTCCTCAGGAAAAAACGAATGACCAGACAGAGGCGATCCTCCACCATCAACTTTCACGACCTCTCTTCTTTCGCGGCAGCTGCTGCTTCCGCTACCCCCTCGCACGTGCTACCACCGCCCTCCACTCTCCCTCCTGGACGTTTGAAATCTGATGTTTTACTTTTCGGTTCATGTGATCTGACACTGTTCCATCAGATATCAGTTTGTTCAATGCATATCTTTTTTTGCCATGAATGGATCTGGACGCTTCAGGTAATTGATCCAACACGGCTGCGATTTCTTTTCCAAAAAGAGCTCAAGAATAGTGATGTGAGCCCTCTCAGAAGAATGATACTCCCCAAGAAAGCAGCCGAGGCTCATCTCCCTACCCTCGAATCAAAGGAAGGAATAGCAATCAACATGGATGACATAGATGGTCTGCATGTTTGGAGCTTCAAGTACAGGTTTTGGCCTAATAACAACAGCCGAATGTATGTACTTGAAAATACTGGTGACTTTGTTAATGTACATGGCTTACAGTTTGGAGATTACATCATGGTTTACCAAGATAATCACAACCAGAATTACGTTATTCAGGCAAGAAAGGCATCTGACCAAGATCATGTATACGGAGACATAAGTGGTATGAACAATGCGGTGAGCGACCGCTATGTGCACGAGTCTGAGGCTAACAAGTTCAGTTCGAGTTCGTTTTACATGCCGAAAATGGATGAGGATATGACTGCGGGCATGTCATTTGTGTACGACACCACCACCTTCTCAAACGACTCGCTGCTTGATTTTTTTGGGGGATCAATGATGACAAACTACTCCAGAAATGGGTCTCTGCATGAAAGTTTCGGATCTGTTGAGAACTTGTCTCTTGACGACTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

363

Amino Acids

40.47

Weight (kDa)

6.19

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	165 - 266	2.9e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26790
fragaria_vesca	FvH4_6g54170
malus_domestica	MD09G1004700.v1.1 MD17G1008700.v1.1
prunus_persica	Prupe.3G312100_v2.0.a1
pyrus_communis	pycom17g00360
rosa_chinensis	RchiOBHm_Chr2g0176341
rosa_laevigata	RLG00000022405
rosa_multiflora	Rmu_co8325273.1_g000001 Rmu_sc0027060.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076550
rosa_rugosa	Rorug02G0593400
rosa_samantha	Rh2AG671900 Rh2BG683400 Rh2CG646100 Rh2DG696900
rosa_wichuraiana	Rw2G055100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	2 cut(s)	131, 284
AclWI	GGATC	7 cut(s)	141, 169, 240, 455, 464, 1009, 1060
AcuI	CTGAAG	1 cut(s)	443
AcvI	CACGTG	1 cut(s)	316
AfaI	GTAC	5 cut(s)	145, 650, 687, 717, 953
AfiI	CCNNNNNNNGG	4 cut(s)	13, 153, 240, 1029
AgsI	TTSAA	4 cut(s)	355, 420, 646, 692
AhlI	ACTAGT	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	5 cut(s)	35, 94, 290, 505, 642
AluI	AGCT	5 cut(s)	35, 94, 290, 505, 642
Alw21I	GWGCWC	3 cut(s)	96, 507, 867
Alw26I	GTCTC	3 cut(s)	816, 1038, 1074
Alw44I	GTGCAC	1 cut(s)	863
AlwI	GGATC	7 cut(s)	141, 169, 240, 455, 464, 1009, 1060
AlwNI	CAGNNNCTG	2 cut(s)	35, 293
AoxI	GGCC	3 cut(s)	60, 97, 659
ApaLI	GTGCAC	1 cut(s)	863
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	713, 859
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	867
BaeI	ACNNNNGTAYC	2 cut(s)	127, 160
BanII	GRGCYC	3 cut(s)	96, 507, 527
BauI	CACGAG	1 cut(s)	866
BbrPI	CACGTG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	3 cut(s)	96, 507, 867
BccI	CCATC	3 cut(s)	263, 408, 617
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	816, 1038, 1074
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	68
BlpI	GCTNAGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	1006
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	91, 491
BsaAI	YACGTR	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	1038
BsaJI	CCNNGG	3 cut(s)	57, 111, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 153, 240, 1029
Bse1I	ACTGG	1 cut(s)	703
Bse21I	CCTNAGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	57, 111, 561
BseGI	GGATG	2 cut(s)	619, 925
BseLI	CCNNNNNNNGG	4 cut(s)	13, 153, 240, 1029
BseMII	CTCAG	4 cut(s)	81, 229, 544, 864
BseNI	ACTGG	1 cut(s)	703
BseSI	GKGCMC	1 cut(s)	867
Bsh1236I	CGCG	2 cut(s)	131, 284
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	3 cut(s)	62, 99, 661
BsiEI	CGRYCG	1 cut(s)	856
BsiHKAI	GWGCWC	3 cut(s)	96, 507, 867
BslI	CCNNNNNNNGG	4 cut(s)	13, 153, 240, 1029
BsmAI	GTCTC	3 cut(s)	816, 1038, 1074
BsnI	GGCC	3 cut(s)	62, 99, 661
Bso31I	GGTCTC	1 cut(s)	1038
Bsp1286I	GDGCHC	4 cut(s)	96, 507, 527, 867
Bsp1407I	TGTACA	1 cut(s)	715
Bsp143I	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
Bsp1720I	GCTNAGC	1 cut(s)	90
BspANI	GGCC	3 cut(s)	62, 99, 661
BspCNI	CTCAG	4 cut(s)	82, 228, 543, 865
BspFNI	CGCG	2 cut(s)	131, 284
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	7 cut(s)	141, 169, 240, 455, 464, 1009, 1060
BspTNI	GGTCTC	1 cut(s)	1038
BsrBI	CCGCTC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	3 cut(s)	57, 111, 561
BssMI	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
BssNAI	GTATAC	1 cut(s)	817
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	111
Bst1107I	GTATAC	1 cut(s)	817
Bst2BI	CACGAG	1 cut(s)	866
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	396, 729
Bst6I	CTCTTC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	715
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	937
BstDEI	CTNAG	4 cut(s)	90, 215, 530, 873
BstF5I	GGATG	2 cut(s)	619, 925
BstFNI	CGCG	2 cut(s)	131, 284
BstKTI	GATC	9 cut(s)	136, 177, 248, 388, 450, 472, 811, 1004, 1055
BstMAI	GTCTC	3 cut(s)	816, 1038, 1074
BstMBI	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
BstMCI	CGRYCG	1 cut(s)	856
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	3 cut(s)	635, 910, 943
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	867
BstUI	CGCG	2 cut(s)	131, 284
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	2 cut(s)	447, 1052
BstYI	RGATCY	2 cut(s)	447, 1052
BstZ17I	GTATAC	1 cut(s)	817
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	62, 99, 661
BtsCI	GGATG	2 cut(s)	619, 925
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 392
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	937
CaiI	CAGNNNCTG	2 cut(s)	35, 293
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	5 cut(s)	144, 649, 686, 716, 952
CviQI	GTAC	5 cut(s)	144, 649, 686, 716, 952
DdeI	CTNAG	4 cut(s)	90, 215, 530, 873
DpnI	GATC	9 cut(s)	135, 176, 247, 387, 449, 471, 810, 1003, 1054
DpnII	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Ecl136II	GAGCTC	2 cut(s)	94, 505
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	62
Eco24I	GRGCYC	3 cut(s)	96, 507, 527
Eco31I	GGTCTC	1 cut(s)	1038
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	2 cut(s)	94, 505
Eco57I	CTGAAG	1 cut(s)	443
Eco72I	CACGTG	1 cut(s)	316
Eco81I	CCTNAGG	1 cut(s)	215
EcoICRI	GAGCTC	2 cut(s)	94, 505
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	3 cut(s)	96, 507, 527
ErhI	CCWWGG	1 cut(s)	111
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FauI	CCCGC	2 cut(s)	161, 928
FblI	GTMKAC	1 cut(s)	816
FokI	GGATG	2 cut(s)	626, 932
FriOI	GRGCYC	3 cut(s)	96, 507, 527
FspBI	CTAG	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	1006
HaeIII	GGCC	3 cut(s)	62, 99, 661
HgaI	GACGC	1 cut(s)	463
HinfI	GANTC	4 cut(s)	160, 584, 869, 977
HphI	GGTGA	2 cut(s)	713, 859
Hpy166II	GTNNAC	4 cut(s)	751, 817, 865, 952
Hpy188I	TCNGA	8 cut(s)	165, 361, 390, 405, 533, 802, 874, 1052
Hpy188III	TCNNGA	7 cut(s)	47, 217, 266, 451, 508, 1023, 1073
Hpy8I	GTNNAC	4 cut(s)	751, 817, 865, 952
HpyAV	CCTTC	2 cut(s)	587, 976
HpyCH4III	ACNGT	2 cut(s)	396, 729
HpyCH4IV	ACGT	3 cut(s)	315, 349, 777
HpyCH4V	TGCA	4 cut(s)	424, 631, 865, 1039
HpyF3I	CTNAG	4 cut(s)	90, 215, 530, 873
HpySE526I	ACGT	3 cut(s)	315, 349, 777
Kzo9I	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
LmnI	GCTCC	2 cut(s)	165, 639
LweI	GCATC	1 cut(s)	806
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	3 cut(s)	315, 349, 777
MaeIII	GTNAC	3 cut(s)	103, 196, 701
MalI	GATC	9 cut(s)	135, 176, 247, 387, 449, 471, 810, 1003, 1054
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
MboII	GAAGA	3 cut(s)	35, 267, 546
MflI	RGATCY	2 cut(s)	447, 1052
MhlI	GDGCHC	4 cut(s)	96, 507, 527, 867
MluCI	AATT	2 cut(s)	465, 772
MlyI	GAGTC	2 cut(s)	878, 971
MmeI	TCCRAC	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	426
MseI	TTAA	2 cut(s)	711, 1087
MspA1I	CMGCKG	3 cut(s)	14, 35, 290
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	131, 284
NdeII	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
NmeAIII	GCCGAG	2 cut(s)	75, 586
NmuCI	GTSAC	3 cut(s)	103, 196, 701
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	3 cut(s)	635, 910, 943
PaqCI	CACCTGC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	160, 584
PflFI	GACNNNGTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	343
PleI	GAGTC	2 cut(s)	877, 971
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
PpsI	GAGTC	2 cut(s)	877, 971
Ppu21I	YACGTR	1 cut(s)	316
Psp124BI	GAGCTC	2 cut(s)	96, 507
Psp6I	CCWGG	1 cut(s)	343
PspCI	CACGTG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	2 cut(s)	35, 293
PsuI	RGATCY	2 cut(s)	447, 1052
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	2 cut(s)	35, 290
RsaI	GTAC	5 cut(s)	145, 650, 687, 717, 953
RsaNI	GTAC	5 cut(s)	144, 649, 686, 716, 952
SacI	GAGCTC	2 cut(s)	96, 507
SaqAI	TTAA	2 cut(s)	711, 1087
Sau3AI	GATC	9 cut(s)	133, 174, 245, 385, 447, 469, 808, 1001, 1052
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	878, 971
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	4 cut(s)	96, 507, 527, 867
SfaNI	GCATC	1 cut(s)	806
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	70, 506
SmoI	CTYRAG	2 cut(s)	70, 506
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	2 cut(s)	465, 772
SseBI	AGGCCT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	2 cut(s)	96, 507
StuI	AGGCCT	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	396, 729
TaiI	ACGT	3 cut(s)	318, 352, 780
TaqI	TCGA	4 cut(s)	158, 173, 582, 893
TasI	AATT	2 cut(s)	465, 772
TatI	WGTACW	3 cut(s)	648, 685, 715
TauI	GCSGC	3 cut(s)	17, 20, 287
TfiI	GAWTC	2 cut(s)	160, 584
Tru1I	TTAA	2 cut(s)	711, 1087
Tru9I	TTAA	2 cut(s)	711, 1087
TscAI	CASTG	2 cut(s)	112, 399
TseFI	GTSAC	3 cut(s)	103, 196, 701
Tsp45I	GTSAC	3 cut(s)	103, 196, 701
TspDTI	ATGAA	4 cut(s)	369, 456, 851, 1056
TspGWI	ACGGA	2 cut(s)	179, 834
TspRI	CASTG	2 cut(s)	112, 399
Tth111I	GACNNNGTC	1 cut(s)	185
VneI	GTGCAC	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	3 cut(s)	635, 910, 943
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.