AT3G26932

dsRNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006533
Physical Location & Seq
Reverse (-)
9929996 .. 9932249
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26932.1

Sequence Viewer

Length: 1080 bp
ATGTATAAGAATCAGTTGCAAGAGCTTGCACAGAGGAGTTGTTTCAGTCTCCCATCATATACATGCACAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTCAATGGTGAGATATTTGAAAGCCCAACTTACTGTTCTACTCTCAGACAAGCTGAGCATTCAGCTGCTGAAGTTGCTCTTAGTGCTCTCTCTTCCAAAGGTCCTTCAAAGTCTCTAACTGCTAGAGTTCTAGATGAGACTGGGATCTACAAGAATCTGCTTCAAGAGACAGCACACAGAGCTGGTCTTGATCTACCGGTTTACACAAGTGTGAGATCAGGACCTGGTCACATCCCAACATTCTCTTGTACTGTGGAGCTTGCTGGAATGAGTTTTAATGGAGAATCAGCAAAGACTAAGAAACAAGCTGAGAAGAATGCAGCCATTGCAGCTTGGTTCTCCTTGAGAAAAATGCCAAGATTGGACCCATTGAGAGGTGAAGAGAAGGAACAAGAGATAGTTGCAAGAGTCCTCTCAAGATTTAGACCCAAAGAAGTGAAAAGAAGAGAACCAAACCAGTCAAGAAGAAGAACAGTCATCAGAACAATTCGCCAAAACACAACAACAACAACAACAACCACAGGAGACTTGTTGTGTGAGAAACTCAGATCCATCAATCTATATACCAATGAAGCTTCATCATCATCACCACCACCACAGAGATTCTGGCCTTCAAGAACAAATCTCACACAAGAACAATCCAAAGTCAAATCATTGCTAGAGAAATGTCAAGAATATGCAGAGAAGAAACAGAGCCTAGATGATCCTAAGCCAGAGATGAGAATCAAAACATCATCACCATCACCATTATCATCATCAGTGGAGAGAAACTGTTATAGTAAGCTCTTACCCTTTCCAAGTTTTGTGTTAAACCATCAGAAACTAGCTCCAGCAGTTCACATCAGATCAGTGATCCCAGTTTGTTCAGCTCCTCCACCAAAACCTAACCCTAACCCTAATTCATCACCGTTCATCACAAGGGAGCTGGGAAATGGAAGCCAAGAGAAGAAGTCATTACCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

359

Amino Acids

40.07

Weight (kDa)

9.69

Isoelectric Point (pI)

65.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 2 - 68 1.7e-15 Double-stranded RNA binding motif
dsrm PF00035 88 - 150 3.6e-15 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 266, 657, 812, 961
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 488
AgeI ACCGGT 1 cut(s) 310
AgsI TTSAA 6 cut(s) 100, 118, 134, 222, 278, 729
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AleI CACNNNNGTG 1 cut(s) 323
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 5 cut(s) 53, 231, 245, 275, 633
AlwI GGATC 4 cut(s) 266, 657, 812, 961
AlwNI CAGNNNCTG 2 cut(s) 182, 338
AoxI GGCC 1 cut(s) 722
ApeKI GCWGC 3 cut(s) 179, 434, 443
AsiGI ACCGGT 1 cut(s) 310
AspS9I GGNCC 4 cut(s) 77, 215, 335, 478
AsuHPI GGTGA 6 cut(s) 134, 503, 693, 843, 849, 1011
AvaII GGWCC 4 cut(s) 77, 215, 335, 478
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 166, 446, 455
BccI CCATC 4 cut(s) 61, 674, 862, 936
BciT130I CCWGG 1 cut(s) 339
BcoDI GTCTC 5 cut(s) 53, 231, 245, 275, 633
BfaI CTAG 6 cut(s) 105, 237, 245, 773, 812, 938
BisI GCNGC 3 cut(s) 180, 435, 444
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 3 cut(s) 181, 436, 445
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 4 cut(s) 77, 215, 335, 478
BmgT120I GGNCC 4 cut(s) 77, 215, 335, 478
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 2 cut(s) 264, 965
BmuI ACTGGG 2 cut(s) 264, 965
BpmI CTGGAG 1 cut(s) 927
Bpu10I CCTNAGC 1 cut(s) 822
Bpu1102I GCTNAGC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 478, 514
BsaBI GATNNNNATC 1 cut(s) 836
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 259, 571, 971
Bse3DI GCAATG 2 cut(s) 438, 767
Bse8I GATNNNNATC 1 cut(s) 836
BseBI CCWGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 345
BseJI GATNNNNATC 1 cut(s) 836
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 2 cut(s) 438, 767
BseMII CTCAG 4 cut(s) 159, 172, 414, 673
BseNI ACTGG 3 cut(s) 259, 571, 971
BseRI GAGGAG 2 cut(s) 49, 975
BseXI GCAGC 3 cut(s) 166, 446, 455
BseYI CCCAGC 1 cut(s) 1039
BshFI GGCC 1 cut(s) 724
BshTI ACCGGT 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 5 cut(s) 53, 231, 245, 275, 633
BsmI GAATGC 2 cut(s) 172, 436
BsnI GGCC 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
Bsp1720I GCTNAGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 4 cut(s) 160, 171, 415, 672
BspLI GGNNCC 1 cut(s) 480
BspPI GGATC 4 cut(s) 266, 657, 812, 961
BsrDI GCAATG 2 cut(s) 438, 767
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 3 cut(s) 259, 571, 971
BssAI RCCGGY 1 cut(s) 310
BssMI GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 5 cut(s) 149, 367, 589, 887, 1023
Bst6I CTCTTC 3 cut(s) 211, 489, 553
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 27, 375
BstDEI CTNAG 7 cut(s) 158, 168, 194, 411, 423, 659, 822
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 8 cut(s) 85, 261, 307, 332, 665, 820, 962, 969
BstMAI GTCTC 5 cut(s) 53, 231, 245, 275, 633
BstMBI GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
BstMWI GCNNNNNNNGC 5 cut(s) 188, 197, 293, 440, 443
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 337
BstV1I GCAGC 3 cut(s) 166, 446, 455
BstX2I RGATCY 2 cut(s) 258, 662
BstYI RGATCY 2 cut(s) 258, 662
BsuRI GGCC 1 cut(s) 724
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 879, 969
Cac8I GCNNGC 2 cut(s) 27, 375
CaiI CAGNNNCTG 2 cut(s) 182, 338
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 4 cut(s) 77, 215, 335, 478
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 1 cut(s) 363
CspAI ACCGGT 1 cut(s) 310
CviAII CATG 2 cut(s) 63, 86
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 7 cut(s) 158, 168, 194, 411, 423, 659, 822
DpnI GATC 8 cut(s) 84, 260, 306, 331, 664, 819, 961, 968
DpnII GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
Eam1104I CTCTTC 3 cut(s) 211, 489, 553
EarI CTCTTC 3 cut(s) 211, 489, 553
Eco47I GGWCC 4 cut(s) 77, 215, 335, 478
Eco57I CTGAAG 1 cut(s) 204
EcoO109I RGGNCCY 2 cut(s) 215, 335
EcoRII CCWGG 1 cut(s) 337
FaeI CATG 2 cut(s) 66, 89
FaiI YATR 9 cut(s) 6, 58, 60, 64, 87, 676, 678, 792, 891
FalI AAGNNNNNCTT 4 cut(s) 127, 159, 177, 209
FatI CATG 2 cut(s) 62, 85
Fnu4HI GCNGC 3 cut(s) 180, 435, 444
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 180, 435, 444
FspBI CTAG 6 cut(s) 105, 237, 245, 773, 812, 938
GluI GCNGC 3 cut(s) 180, 435, 444
GsaI CCCAGC 1 cut(s) 1043
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 1 cut(s) 724
HapII CCGG 1 cut(s) 311
Hin1II CATG 2 cut(s) 66, 89
HindIII AAGCTT 1 cut(s) 687
HinfI GANTC 7 cut(s) 10, 96, 268, 398, 522, 717, 837
HpaII CCGG 1 cut(s) 311
HphI GGTGA 6 cut(s) 134, 503, 693, 843, 849, 1011
Hpy166II GTNNAC 3 cut(s) 112, 316, 952
Hpy188I TCNGA 5 cut(s) 161, 596, 662, 933, 959
Hpy188III TCNNGA 8 cut(s) 245, 278, 302, 333, 531, 576, 729, 785
Hpy8I GTNNAC 3 cut(s) 112, 316, 952
HpyAV CCTTC 4 cut(s) 68, 228, 493, 735
HpyCH4III ACNGT 5 cut(s) 149, 367, 589, 887, 1023
HpyCH4V TGCA 7 cut(s) 19, 29, 66, 434, 443, 518, 794
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 197, 293, 440, 443
HpyF3I CTNAG 7 cut(s) 158, 168, 194, 411, 423, 659, 822
Hsp92II CATG 2 cut(s) 66, 89
Kzo9I GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
LmnI GCTCC 5 cut(s) 94, 370, 946, 988, 1036
Lsp1109I GCAGC 3 cut(s) 166, 446, 455
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 6 cut(s) 105, 237, 245, 773, 812, 938
MaeIII GTNAC 1 cut(s) 341
MalI GATC 8 cut(s) 84, 260, 306, 331, 664, 819, 961, 968
MboI GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
MboII GAAGA 8 cut(s) 198, 439, 506, 570, 591, 594, 811, 1072
MflI RGATCY 2 cut(s) 258, 662
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 3 cut(s) 600, 1012, 1075
MlyI GAGTC 1 cut(s) 531
MnlI CCTC 4 cut(s) 27, 482, 536, 996
MseI TTAA 2 cut(s) 390, 923
MslI CAYNNNNRTG 2 cut(s) 61, 323
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 339
Mva1269I GAATGC 2 cut(s) 172, 436
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 5 cut(s) 188, 197, 293, 440, 443
NdeII GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
NlaIII CATG 2 cut(s) 66, 89
NlaIV GGNNCC 1 cut(s) 480
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 66
OliI CACNNNNGTG 1 cut(s) 323
PctI GAATGC 2 cut(s) 172, 436
PfeI GAWTC 6 cut(s) 10, 96, 268, 398, 717, 837
PflFI GACNNNGTC 1 cut(s) 339
PinAI ACCGGT 1 cut(s) 310
PkrI GCNGC 3 cut(s) 181, 436, 445
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PpuMI RGGWCCY 2 cut(s) 215, 335
Psp5II RGGWCCY 2 cut(s) 215, 335
Psp6I CCWGG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 1039
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 4 cut(s) 77, 215, 335, 478
PspPPI RGGWCCY 2 cut(s) 215, 335
PstNI CAGNNNCTG 2 cut(s) 182, 338
PsuI RGATCY 2 cut(s) 258, 662
PsyI GACNNNGTC 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 2 cut(s) 61, 323
SaqAI TTAA 2 cut(s) 390, 923
SatI GCNGC 3 cut(s) 180, 435, 444
Sau3AI GATC 8 cut(s) 82, 258, 304, 329, 662, 817, 959, 966
Sau96I GGNCC 4 cut(s) 77, 215, 335, 478
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 202
SexAI ACCWGGT 1 cut(s) 337
SinI GGWCC 4 cut(s) 77, 215, 335, 478
SmiMI CAYNNNNRTG 2 cut(s) 61, 323
SmlI CTYRAG 2 cut(s) 457, 529
SmoI CTYRAG 2 cut(s) 457, 529
Sse9I AATT 3 cut(s) 600, 1012, 1075
SspMI CTAG 6 cut(s) 105, 237, 245, 773, 812, 938
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 5 cut(s) 149, 367, 589, 887, 1023
TasI AATT 3 cut(s) 600, 1012, 1075
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 6 cut(s) 10, 96, 268, 398, 717, 837
Tru1I TTAA 2 cut(s) 390, 923
Tru9I TTAA 2 cut(s) 390, 923
TscAI CASTG 2 cut(s) 879, 969
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 3 cut(s) 179, 434, 443
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 4 cut(s) 681, 699, 1005, 1015
TspRI CASTG 2 cut(s) 879, 969
Tth111I GACNNNGTC 1 cut(s) 339
VpaK11BI GGWCC 4 cut(s) 77, 215, 335, 478
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 717
XspI CTAG 6 cut(s) 105, 237, 245, 773, 812, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.