Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0006533

Physical Location & Seq

Genomic Coordinates Reverse (-)

352901 .. 354073

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAATTTTACCGGCGAACCGGCCAAAACCAAAAAGCAAGCAGAGAAGAATGCTGCAATTGCAGCCTGGTCTGCCCTGAAAAGAAACCTGGGTTTTTTCGCAAACAAAGAAGCAGAAGAAGAGCAGGCAGTTGTGACAAGGCTGCTCTCAAATTTTAGACCCAAAGATGATAACAACAACAATAATAATAGCAAGCAATTTATGAGGAGGAGGGATCCAATTCAAGCAAGGAGAAGAATGGTCAGATCATCGTCGTCGTTGTCATCGTCATCATCTTCGTCCAGTAGTAGTATTAGCTCTCTACAGAATCAAAACCGGAGGCTGATAGATCTGTTAACAGATTTGGTTCCACAAGTTTCAACAGTTCAAAAGCAGAACACTTTTGCATCTCTTCTTCCTCCACCTCCTCCTCGAACCGCCTCGAAGATTTTGCCACCAACTACAATGCTCAACAAAGACAAGTCCCCTTCCTACCCGCCGTTATCCAATTATAGGCCAATCCCGGTACAAGTGAATGCGAGGGGAGGTTCACAAGTTATCCAACCTCCATTGGAAGAGCACCAAAGGGATGAGGAAGAATGGCTTGGTATTGGAACGGAGGGTGCTAGTGGTTCAAATTCAAGTGGTATGTTTGGTTCAGGTTCTCCATACAGGCAATTTCCTGTGTCCAATGCCGGAAAGTTTGGCGCTTTTGAATTGTCCGGTCCAATTAAGGCCGCGCCCAGTGTCAAGATTTCAGAAAGACGGACTAGTGGATTCCACATGTATAGTGGAGGGTTAAGTCCTCACAGGAATATTGCACCTGCGGTTCAAATGAGATCGGTGATCCCAGTTTGTGCAGCACCACCGGCACCGGCGAGACCCTCCTCACCAACAAAAGTGATGGCAATGAAGGCCATTTCTTCAGAAGCAGAGGCAGAAGCAGGCTTAAGTTTAAGTGCTTCTACTAATTCATCGTCATCAGGCAGCTCAAAGTCGAAGATGCCCGAGTCAAGTTCAAGTTCCAGTCGGCAGCTGGGTTCCGAGTTCAACAAGCTGCGGTTAGGAGGAGGCAACAAAGATGGTAATAAGATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

360

Amino Acids

38.48

Weight (kDa)

10.25

Isoelectric Point (pI)

73.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26932 AT3G26932 AT3G26932 AT5G41070
fragaria_vesca	FvH4_6g04510 FvH4_6g53980
malus_domestica	MD09G1006600.v1.1 MD17G1010500.v1.1
prunus_persica	Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1
pyrus_communis	pycom111g00490 pycom17g00530
rosa_chinensis	RchiOBHm_Chr2g0176151
rosa_laevigata	RLG00000022385
rosa_multiflora	Rmu_co8195346.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076730
rosa_rugosa	Rorug02G0591000 Rorug02G0591000 Rorug02G0591100
rosa_samantha	Rh2AG669700 Rh2BG681300 Rh2CG644200 Rh2DG695000
rosa_wichuraiana	Rw2G054940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	1 cut(s)	811
AccB1I	GGYRCC	1 cut(s)	850
AccII	CGCG	1 cut(s)	719
AciI	CCGC	5 cut(s)	417, 476, 717, 806, 1039
AclWI	GGATC	3 cut(s)	209, 222, 820
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	3 cut(s)	4, 151, 616
AcuI	CTGAAG	1 cut(s)	888
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	492
AflII	CTTAAG	1 cut(s)	928
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	9 cut(s)	224, 360, 368, 615, 621, 695, 812, 999, 1030
AhlI	ACTAGT	1 cut(s)	749
AjnI	CCWGG	2 cut(s)	65, 87
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AluBI	AGCT	4 cut(s)	297, 969, 1015, 1036
AluI	AGCT	4 cut(s)	297, 969, 1015, 1036
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	3 cut(s)	209, 222, 820
Ama87I	CYCGRG	1 cut(s)	986
AoxI	GGCC	4 cut(s)	21, 494, 714, 894
ApeKI	GCWGC	7 cut(s)	53, 62, 142, 839, 966, 1012, 1036
ApoI	RAATTY	3 cut(s)	4, 151, 616
AspLEI	GCGC	2 cut(s)	689, 721
AspS9I	GGNCC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	835, 861
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	7 cut(s)	40, 74, 129, 851, 978, 1023, 1024
BccI	CCATC	2 cut(s)	877, 1055
BceAI	ACGGC	1 cut(s)	463
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BciT130I	CCWGG	2 cut(s)	67, 89
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	853
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	2 cut(s)	606, 750
BfmI	CTRYAG	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	928
BfuAI	ACCTGC	1 cut(s)	811
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	8 cut(s)	54, 63, 143, 717, 840, 967, 1013, 1037
BlsI	GCNGC	8 cut(s)	55, 64, 144, 718, 841, 968, 1014, 1038
Bme1390I	CCNGG	3 cut(s)	67, 89, 503
Bme18I	GGWCC	1 cut(s)	704
BmeT110I	CYCGRG	1 cut(s)	986
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	4 cut(s)	216, 348, 852, 1021
BmrFI	CCNGG	3 cut(s)	67, 89, 503
BmrI	ACTGGG	2 cut(s)	717, 824
BmsI	GCATC	2 cut(s)	395, 972
BmuI	ACTGGG	2 cut(s)	717, 824
BpuMI	CCSGG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	853
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	2 cut(s)	315, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse118I	RCCGGY	4 cut(s)	11, 19, 847, 853
Bse1I	ACTGG	4 cut(s)	282, 723, 830, 1005
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	2 cut(s)	67, 89
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	894
BseNI	ACTGG	4 cut(s)	282, 723, 830, 1005
BseRI	GAGGAG	6 cut(s)	220, 223, 396, 399, 856, 1062
BseXI	GCAGC	7 cut(s)	40, 74, 129, 851, 978, 1023, 1024
BseYI	CCCAGC	1 cut(s)	1015
BsgI	GTGCAG	1 cut(s)	858
Bsh1236I	CGCG	1 cut(s)	719
BshFI	GGCC	4 cut(s)	23, 496, 716, 896
BshNI	GGYRCC	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	986
BsiSI	CCGG	8 cut(s)	12, 20, 316, 503, 675, 702, 848, 854
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	1 cut(s)	853
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	2 cut(s)	55, 520
BsnI	GGCC	4 cut(s)	23, 496, 716, 896
Bso31I	GGTCTC	1 cut(s)	853
BsoBI	CYCGRG	1 cut(s)	986
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	5 cut(s)	214, 245, 328, 818, 825
BspACI	CCGC	5 cut(s)	417, 476, 717, 806, 1039
BspANI	GGCC	4 cut(s)	23, 496, 716, 896
BspFNI	CGCG	1 cut(s)	719
BspLI	GGNNCC	4 cut(s)	216, 348, 852, 1021
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	209, 222, 820
BspQI	GCTCTTC	2 cut(s)	114, 549
BspT107I	GGYRCC	1 cut(s)	850
BspTI	CTTAAG	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	853
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	4 cut(s)	11, 19, 847, 853
BsrI	ACTGG	4 cut(s)	282, 723, 830, 1005
BssAI	RCCGGY	4 cut(s)	11, 19, 847, 853
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	5 cut(s)	214, 245, 328, 818, 825
Bst2UI	CCWGG	2 cut(s)	67, 89
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	3 cut(s)	114, 396, 549
BstAFI	CTTAAG	1 cut(s)	928
BstC8I	GCNNGC	4 cut(s)	39, 126, 194, 925
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	1 cut(s)	719
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	2 cut(s)	689, 721
BstKTI	GATC	5 cut(s)	217, 248, 331, 821, 828
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	5 cut(s)	214, 245, 328, 818, 825
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 62, 71, 848, 893
BstNI	CCWGG	2 cut(s)	67, 89
BstNSI	RCATGY	1 cut(s)	766
BstSCI	CCNGG	3 cut(s)	65, 87, 501
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	7 cut(s)	40, 74, 129, 851, 978, 1023, 1024
BstX2I	RGATCY	2 cut(s)	214, 328
BstYI	RGATCY	2 cut(s)	214, 328
BsuRI	GGCC	4 cut(s)	23, 496, 716, 896
BtsCI	GGATG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	730
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	4 cut(s)	39, 126, 194, 925
CfoI	GCGC	2 cut(s)	689, 721
Cfr10I	RCCGGY	4 cut(s)	11, 19, 847, 853
Cfr13I	GGNCC	1 cut(s)	704
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	1 cut(s)	763
CviQI	GTAC	1 cut(s)	506
DpnI	GATC	5 cut(s)	216, 247, 330, 820, 827
DpnII	GATC	5 cut(s)	214, 245, 328, 818, 825
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	3 cut(s)	114, 396, 549
EarI	CTCTTC	3 cut(s)	114, 396, 549
Eco31I	GGTCTC	1 cut(s)	853
Eco47I	GGWCC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	888
Eco88I	CYCGRG	1 cut(s)	986
EcoRII	CCWGG	2 cut(s)	65, 87
FaeI	CATG	1 cut(s)	766
FaiI	YATR	8 cut(s)	203, 492, 629, 649, 764, 768, 1076, 1078
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	762
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	8 cut(s)	54, 63, 143, 717, 840, 967, 1013, 1037
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	8 cut(s)	54, 63, 143, 717, 840, 967, 1013, 1037
FspBI	CTAG	2 cut(s)	606, 750
GlaI	GCGC	2 cut(s)	688, 720
GluI	GCNGC	8 cut(s)	54, 63, 143, 717, 840, 967, 1013, 1037
GsaI	CCCAGC	1 cut(s)	1019
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	4 cut(s)	23, 496, 716, 896
HapII	CCGG	8 cut(s)	12, 20, 316, 503, 675, 702, 848, 854
HhaI	GCGC	2 cut(s)	689, 721
Hin1II	CATG	1 cut(s)	766
Hin6I	GCGC	2 cut(s)	687, 719
HinP1I	GCGC	2 cut(s)	687, 719
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	307, 756, 989
HpaI	GTTAAC	1 cut(s)	336
HpaII	CCGG	8 cut(s)	12, 20, 316, 503, 675, 702, 848, 854
HphI	GGTGA	2 cut(s)	835, 861
Hpy166II	GTNNAC	2 cut(s)	336, 530
Hpy188I	TCNGA	4 cut(s)	245, 739, 907, 1024
Hpy188III	TCNNGA	1 cut(s)	730
Hpy8I	GTNNAC	2 cut(s)	336, 530
Hpy99I	CGWCG	2 cut(s)	256, 259
HpyAV	CCTTC	2 cut(s)	477, 886
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	56, 62, 386, 800, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 62, 71, 848, 893
Hsp92II	CATG	1 cut(s)	766
HspAI	GCGC	2 cut(s)	687, 719
KspAI	GTTAAC	1 cut(s)	336
Kzo9I	GATC	5 cut(s)	214, 245, 328, 818, 825
LguI	GCTCTTC	2 cut(s)	114, 549
Lsp1109I	GCAGC	7 cut(s)	40, 74, 129, 851, 978, 1023, 1024
LweI	GCATC	2 cut(s)	395, 972
MaeI	CTAG	2 cut(s)	606, 750
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	5 cut(s)	216, 247, 330, 820, 827
MboI	GATC	5 cut(s)	214, 245, 328, 818, 825
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	2 cut(s)	214, 328
MhlI	GDGCHC	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	998
MmeI	TCCRAC	1 cut(s)	565
MseI	TTAA	5 cut(s)	335, 711, 779, 929, 935
MspA1I	CMGCKG	1 cut(s)	1015
MspCI	CTTAAG	1 cut(s)	928
MspI	CCGG	8 cut(s)	12, 20, 316, 503, 675, 702, 848, 854
MspR9I	CCNGG	3 cut(s)	67, 89, 503
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	2 cut(s)	55, 520
MvaI	CCWGG	2 cut(s)	67, 89
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	5 cut(s)	59, 62, 71, 848, 893
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	5 cut(s)	214, 245, 328, 818, 825
NlaIII	CATG	1 cut(s)	766
NlaIV	GGNNCC	4 cut(s)	216, 348, 852, 1021
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	766
PaqCI	CACCTGC	1 cut(s)	811
PciI	ACATGT	1 cut(s)	762
PciSI	GCTCTTC	2 cut(s)	114, 549
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PctI	GAATGC	2 cut(s)	55, 520
PfeI	GAWTC	2 cut(s)	307, 756
PkrI	GCNGC	8 cut(s)	55, 64, 144, 718, 841, 968, 1014, 1038
PleI	GAGTC	1 cut(s)	997
PpsI	GAGTC	1 cut(s)	997
PscI	ACATGT	1 cut(s)	762
Psp6I	CCWGG	2 cut(s)	65, 87
PspFI	CCCAGC	1 cut(s)	1015
PspGI	CCWGG	2 cut(s)	65, 87
PspN4I	GGNNCC	4 cut(s)	216, 348, 852, 1021
PspPI	GGNCC	1 cut(s)	704
PsrI	GAACNNNNNNTAC	2 cut(s)	619, 651
PsuI	RGATCY	2 cut(s)	214, 328
PvuII	CAGCTG	1 cut(s)	1015
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SapI	GCTCTTC	2 cut(s)	114, 549
SaqAI	TTAA	5 cut(s)	335, 711, 779, 929, 935
SatI	GCNGC	8 cut(s)	54, 63, 143, 717, 840, 967, 1013, 1037
Sau3AI	GATC	5 cut(s)	214, 245, 328, 818, 825
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	1 cut(s)	998
ScrFI	CCNGG	3 cut(s)	67, 89, 503
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	2 cut(s)	395, 972
SfcI	CTRYAG	1 cut(s)	302
SgrAI	CRCCGGYG	1 cut(s)	853
SinI	GGWCC	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
SpeI	ACTAGT	1 cut(s)	749
SsiI	CCGC	5 cut(s)	417, 476, 717, 806, 1039
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	2 cut(s)	606, 750
StyD4I	CCNGG	3 cut(s)	65, 87, 501
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	412, 422, 977
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	307, 756
Tru1I	TTAA	5 cut(s)	335, 711, 779, 929, 935
Tru9I	TTAA	5 cut(s)	335, 711, 779, 929, 935
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	7 cut(s)	53, 62, 142, 839, 966, 1012, 1036
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	17, 905, 942
TspGWI	ACGGA	2 cut(s)	611, 760
TspRI	CASTG	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	928
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	3 cut(s)	4, 151, 616
XceI	RCATGY	1 cut(s)	766
XcmI	CCANNNNNNNNNTGG	2 cut(s)	767, 1012
XspI	CTAG	2 cut(s)	606, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.