Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006533

Physical Location & Seq

Genomic Coordinates Forward (+)

83011921 .. 83015209

Gene Structure 3289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022385

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGTATAAGAACCAGCTGCAGGAGCTTGCACAGAGAAGCTGTTTCAACCTGCCTTCATATTCTTGCATCATAGAAGGACCAAATCATGCACCAAGATTCAAAGCTTCTGTTAACTTCAACGGTGAGATCTTCGACAGCCCAAACTACTGCACCACACTGAGACAAGCAGAGCATTCTGCTGCTGAAGTAGCCCTCAATGTTCTTTCCACTAGAGGCCCTTCAAGGTCTTTAACTGCAAGAGTTCTTGATGAAACTGGAATATACAAAAACCTGCTTCAAGAAACTGCTCACAGAGCTGGGCTGAAGCTGCCTGTATACACTATTGTGAGATCAGGGCCAGGGCATGTCCCAACTTTCACTTGTAGTGTAGAGCTTGCTGGCATGAATTTTAATGGGGAGGCAGCAAAGACCAAGAAGCAAGCTGAAAAGAATGCAGCAATTGCTGCCTGGTCTGCCTTGAAAAGAATCTCACTGGTGACAAACAAAGAAGGAGAGAGAAGTGGTGATCAAGAACAGCAGGAGCAAGCAGTTGTGACAAGGCTGCTCTCAAATTTTAGACTCTCAAACAAAGAAGACCATAGCAGACAGTTGAGGAGGAGACCAGATCATCAAACTCAAGCAAGGAGAAGAACTGTGAGGGATGCTCATAATCATATTCATAGTTATAGGGACAACAATGCCTCCACCTCCACAAACTCTCTAGTACAGAACCTACAGCATTGGAGGCTCATAGATGATCTGTTAACGGATTTGGTTCCTGGAGTTTCAAGTAATTCACATAAACAAAGCAGCTTTGCGTCTCTTCTCCCTCCACCGCCACCGCGAAAGGAGTCCAAGATTTTGCCACGAACAGCTACACTCAACAAATCAGACAATTCCTCCTACTACAATTCCAGTTATAATAGGCCTATTCCTGTCCAAATGAGGGGTAGTGGTAGATCACAGGTTGTTCCACCTCCATTGGAAGACCACCAAAAGGATGAGGAAGAATGGCTTGGTACAAAGTCAGATAGCTTGATCAGTAAGATGCCCGATAGTGAAAAGGAAGGTCATGGTCATGGTCCTAGCCCTAGTAGTTATTTTTCAAATCCAAGCAGTCCTGTATTTGGTTCCAGTGTTGCACGCATCAGGCAATTTCCAATGTCCCCAAATCCGGTTAAGGCACCAACTACTAGTGCAAGTGCAAGTTCAAGTTCCCTCCTGGGCAGAAGAAGCATGTGCACTCAAGGGTTCAATCCTTACAGTCATAGGGTTGCCCCAGCAGTTCATATCAGAGCGATGATTCCTGTTTGTGCAGCACCATCTGTAGCAGTGAGGCCCTTAGTAGTAACTCCATCAAACCCACCACCATTACCAATATTACCAAGAATGAAAGAAATTAGTAGTAGCAGTCCCAGTCCTTGTACTAGTGCTAGTACTAGTACTAGTTCACAGCCAGCAGCAGTCTTGAAAGAGAGTGATTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

490

Amino Acids

53.54

Weight (kDa)

9.65

Isoelectric Point (pI)

68.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	2 - 68	1.3e-14	Double-stranded RNA binding motif
dsrm	PF00035	88 - 152	3.8e-16	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26932 AT3G26932 AT3G26932 AT5G41070
fragaria_vesca	FvH4_6g04510 FvH4_6g53980
malus_domestica	MD09G1006600.v1.1 MD17G1010500.v1.1
prunus_persica	Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1
pyrus_communis	pycom111g00490 pycom17g00530
rosa_chinensis	RchiOBHm_Chr2g0176151
rosa_laevigata	RLG00000022385
rosa_multiflora	Rmu_co8195346.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076730
rosa_rugosa	Rorug02G0591000 Rorug02G0591000 Rorug02G0591100
rosa_samantha	Rh2AG669700 Rh2BG681300 Rh2CG644200 Rh2DG695000
rosa_wichuraiana	Rw2G054940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	900
Acc36I	ACCTGC	2 cut(s)	57, 279
AccB1I	GGYRCC	1 cut(s)	1162
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	823
AciI	CCGC	2 cut(s)	815, 821
AcsI	RAATTY	2 cut(s)	385, 550
AcuI	CTGAAG	2 cut(s)	204, 323
AfaI	GTAC	5 cut(s)	705, 1000, 1405, 1417, 1423
AfiI	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1106, 1153
AhlI	ACTAGT	4 cut(s)	1172, 1406, 1418, 1424
AjnI	CCWGG	4 cut(s)	337, 446, 757, 1200
AjuI	GAANNNNNNNTTGG	2 cut(s)	978, 1010
AleI	CACNNNNGTG	1 cut(s)	323
Alw21I	GWGCWC	1 cut(s)	1223
Alw26I	GTCTC	3 cut(s)	154, 592, 804
Alw44I	GTGCAC	1 cut(s)	1219
AoxI	GGCC	4 cut(s)	214, 335, 905, 1316
ApaLI	GTGCAC	1 cut(s)	1219
ApoI	RAATTY	2 cut(s)	385, 550
AspS9I	GGNCC	5 cut(s)	77, 215, 335, 1061, 1317
AsuHPI	GGTGA	3 cut(s)	134, 487, 515
AvaII	GGWCC	2 cut(s)	77, 1061
BaeGI	GKGCMC	1 cut(s)	1223
BanI	GGYRCC	1 cut(s)	1162
BbsI	GAAGAC	2 cut(s)	579, 972
Bbv12I	GWGCWC	1 cut(s)	1223
BccI	CCATC	2 cut(s)	1309, 1342
BciT130I	CCWGG	4 cut(s)	339, 448, 759, 1202
BclI	TGATCA	2 cut(s)	505, 1017
BcoDI	GTCTC	3 cut(s)	154, 592, 804
BcuI	ACTAGT	4 cut(s)	1172, 1406, 1418, 1424
BfaI	CTAG	9 cut(s)	210, 701, 1065, 1071, 1173, 1407, 1413, 1419, 1425
BfmI	CTRYAG	3 cut(s)	17, 713, 1305
BfuAI	ACCTGC	2 cut(s)	57, 279
BglII	AGATCT	1 cut(s)	126
BmcAI	AGTACT	2 cut(s)	1417, 1423
Bme1390I	CCNGG	4 cut(s)	339, 448, 759, 1202
Bme18I	GGWCC	2 cut(s)	77, 1061
BmgT120I	GGNCC	5 cut(s)	77, 215, 335, 1061, 1317
BmiI	GGNNCC	3 cut(s)	756, 1111, 1164
BmrFI	CCNGG	4 cut(s)	339, 448, 759, 1202
BmrI	ACTGGG	1 cut(s)	1389
BmsI	GCATC	4 cut(s)	75, 631, 1017, 1134
BmuI	ACTGGG	1 cut(s)	1389
BpiI	GAAGAC	2 cut(s)	579, 972
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	600, 1209
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	2 cut(s)	338, 1201
BsaWI	WCCGGW	1 cut(s)	1153
BsaXI	ACNNNNNCTCC	4 cut(s)	665, 695, 863, 893
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1106, 1153
Bse1I	ACTGG	5 cut(s)	259, 477, 894, 1113, 1395
BseBI	CCWGG	4 cut(s)	339, 448, 759, 1202
BseDI	CCNNGG	2 cut(s)	338, 1201
BseGI	GGATG	2 cut(s)	646, 985
BseLI	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1106, 1153
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	5 cut(s)	259, 477, 894, 1113, 1395
BseRI	GAGGAG	2 cut(s)	607, 610
BseSI	GKGCMC	1 cut(s)	1223
BseYI	CCCAGC	2 cut(s)	296, 1258
BsgI	GTGCAG	2 cut(s)	133, 1314
Bsh1236I	CGCG	1 cut(s)	823
BshFI	GGCC	4 cut(s)	216, 337, 907, 1318
BshNI	GGYRCC	1 cut(s)	1162
BsiHKAI	GWGCWC	1 cut(s)	1223
BsiSI	CCGG	1 cut(s)	1154
BslFI	GGGAC	4 cut(s)	332, 683, 1129, 1377
BslI	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1106, 1153
BsmAI	GTCTC	3 cut(s)	154, 592, 804
BsmBI	CGTCTC	1 cut(s)	804
BsmFI	GGGAC	4 cut(s)	332, 683, 1129, 1377
BsmI	GAATGC	2 cut(s)	172, 436
BsnI	GGCC	4 cut(s)	216, 337, 907, 1318
Bso31I	GGTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	1223
Bsp143I	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
BspACI	CCGC	2 cut(s)	815, 821
BspANI	GGCC	4 cut(s)	216, 337, 907, 1318
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	823
BspLI	GGNNCC	3 cut(s)	756, 1111, 1164
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	2 cut(s)	57, 279
BspT107I	GGYRCC	1 cut(s)	1162
BspTNI	GGTCTC	1 cut(s)	592
BsrI	ACTGG	5 cut(s)	259, 477, 894, 1113, 1395
BssECI	CCNNGG	2 cut(s)	338, 1201
BssMI	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
BssNAI	GTATAC	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	316
Bst2UI	CCWGG	4 cut(s)	339, 448, 759, 1202
Bst4CI	ACNGT	4 cut(s)	122, 588, 634, 1244
Bst6I	CTCTTC	1 cut(s)	807
BstAPI	GCANNNNNTGC	2 cut(s)	440, 443
BstC8I	GCNNGC	7 cut(s)	27, 375, 379, 420, 525, 1123, 1437
BstDEI	CTNAG	2 cut(s)	158, 1321
BstF5I	GGATG	2 cut(s)	646, 985
BstFNI	CGCG	1 cut(s)	823
BstKTI	GATC	7 cut(s)	129, 332, 508, 607, 739, 941, 1020
BstMAI	GTCTC	3 cut(s)	154, 592, 804
BstMBI	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 188, 293, 307, 440, 443, 452, 724, 1212
BstNI	CCWGG	4 cut(s)	339, 448, 759, 1202
BstNSI	RCATGY	2 cut(s)	347, 1219
BstSCI	CCNGG	4 cut(s)	337, 446, 757, 1200
BstSFI	CTRYAG	3 cut(s)	17, 713, 1305
BstSLI	GKGCMC	1 cut(s)	1223
BstUI	CGCG	1 cut(s)	823
BstV2I	GAAGAC	2 cut(s)	579, 972
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BstZ17I	GTATAC	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	216, 337, 907, 1318
BtgZI	GCGATG	1 cut(s)	1292
BtsCI	GGATG	2 cut(s)	646, 985
BtsI	GCAGTG	1 cut(s)	1317
BtsIMutI	CAGTG	4 cut(s)	155, 470, 1120, 1317
BveI	ACCTGC	2 cut(s)	57, 279
Cac8I	GCNNGC	7 cut(s)	27, 375, 379, 420, 525, 1123, 1437
Cfr13I	GGNCC	5 cut(s)	77, 215, 335, 1061, 1317
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	5 cut(s)	704, 999, 1404, 1416, 1422
CspCI	CAANNNNNGTGG	2 cut(s)	942, 977
CviAII	CATG	6 cut(s)	86, 344, 382, 1052, 1058, 1216
CviQI	GTAC	5 cut(s)	704, 999, 1404, 1416, 1422
DdeI	CTNAG	2 cut(s)	158, 1321
DpnI	GATC	7 cut(s)	128, 331, 507, 606, 738, 940, 1019
DpnII	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco147I	AGGCCT	1 cut(s)	907
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	77, 1061
Eco57I	CTGAAG	2 cut(s)	204, 323
EcoO109I	RGGNCCY	2 cut(s)	215, 1317
EcoRII	CCWGG	4 cut(s)	337, 446, 757, 1200
Esp3I	CGTCTC	1 cut(s)	804
FaeI	CATG	6 cut(s)	89, 347, 385, 1055, 1061, 1219
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FaqI	GGGAC	4 cut(s)	332, 683, 1129, 1377
FatI	CATG	6 cut(s)	85, 343, 381, 1051, 1057, 1215
FbaI	TGATCA	2 cut(s)	505, 1017
FblI	GTMKAC	1 cut(s)	315
FokI	GGATG	2 cut(s)	653, 992
FspBI	CTAG	9 cut(s)	210, 701, 1065, 1071, 1173, 1407, 1413, 1419, 1425
GsaI	CCCAGC	2 cut(s)	300, 1262
GsuI	CTGGAG	1 cut(s)	780
HaeIII	GGCC	4 cut(s)	216, 337, 907, 1318
HapII	CCGG	1 cut(s)	1154
HgaI	GACGC	1 cut(s)	786
Hin1II	CATG	6 cut(s)	89, 347, 385, 1055, 1061, 1219
HincII	GTYRAC	2 cut(s)	112, 744
HindII	GTYRAC	2 cut(s)	112, 744
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	6 cut(s)	96, 465, 558, 830, 1282, 1460
HpaI	GTTAAC	2 cut(s)	112, 744
HpaII	CCGG	1 cut(s)	1154
HphI	GGTGA	3 cut(s)	134, 487, 515
Hpy166II	GTNNAC	5 cut(s)	112, 316, 744, 1221, 1430
Hpy188I	TCNGA	3 cut(s)	871, 1009, 1274
Hpy188III	TCNNGA	4 cut(s)	245, 278, 509, 1447
Hpy8I	GTNNAC	5 cut(s)	112, 316, 744, 1221, 1430
HpyAV	CCTTC	5 cut(s)	63, 68, 228, 482, 1040
HpyCH4III	ACNGT	4 cut(s)	122, 588, 634, 1244
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 188, 293, 307, 440, 443, 452, 724, 1212
HpyF3I	CTNAG	2 cut(s)	158, 1321
Hsp92II	CATG	6 cut(s)	89, 347, 385, 1055, 1061, 1219
Ksp22I	TGATCA	2 cut(s)	505, 1017
KspAI	GTTAAC	2 cut(s)	112, 744
Kzo9I	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
LmnI	GCTCC	2 cut(s)	22, 520
LweI	GCATC	4 cut(s)	75, 631, 1017, 1134
MaeI	CTAG	9 cut(s)	210, 701, 1065, 1071, 1173, 1407, 1413, 1419, 1425
MaeIII	GTNAC	3 cut(s)	475, 532, 1327
MalI	GATC	7 cut(s)	128, 331, 507, 606, 738, 940, 1019
MboI	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
MboII	GAAGA	7 cut(s)	121, 584, 639, 794, 977, 998, 1221
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	1223
MluCI	AATT	8 cut(s)	385, 438, 550, 772, 874, 889, 1133, 1377
MlyI	GAGTC	2 cut(s)	552, 839
MseI	TTAA	5 cut(s)	111, 230, 390, 743, 1158
MslI	CAYNNNNRTG	2 cut(s)	323, 1056
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	1 cut(s)	1154
MspR9I	CCNGG	4 cut(s)	339, 448, 759, 1202
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	2 cut(s)	172, 436
MvaI	CCWGG	4 cut(s)	339, 448, 759, 1202
MvnI	CGCG	1 cut(s)	823
MwoI	GCNNNNNNNGC	9 cut(s)	22, 188, 293, 307, 440, 443, 452, 724, 1212
NdeII	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
NlaIII	CATG	6 cut(s)	89, 347, 385, 1055, 1061, 1219
NlaIV	GGNNCC	3 cut(s)	756, 1111, 1164
NmuCI	GTSAC	2 cut(s)	475, 532
NspI	RCATGY	2 cut(s)	347, 1219
OliI	CACNNNNGTG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	907
PctI	GAATGC	2 cut(s)	172, 436
PfeI	GAWTC	4 cut(s)	96, 465, 1282, 1460
PfoI	TCCNGGA	1 cut(s)	757
PleI	GAGTC	2 cut(s)	552, 838
PpsI	GAGTC	2 cut(s)	552, 838
PsiI	TTATAA	1 cut(s)	900
Psp6I	CCWGG	4 cut(s)	337, 446, 757, 1200
PspFI	CCCAGC	2 cut(s)	296, 1258
PspGI	CCWGG	4 cut(s)	337, 446, 757, 1200
PspN4I	GGNNCC	3 cut(s)	756, 1111, 1164
PspPI	GGNCC	5 cut(s)	77, 215, 335, 1061, 1317
PstI	CTGCAG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	126
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	5 cut(s)	705, 1000, 1405, 1417, 1423
RsaNI	GTAC	5 cut(s)	704, 999, 1404, 1416, 1422
RseI	CAYNNNNRTG	2 cut(s)	323, 1056
SaqAI	TTAA	5 cut(s)	111, 230, 390, 743, 1158
Sau3AI	GATC	7 cut(s)	126, 329, 505, 604, 736, 938, 1017
Sau96I	GGNCC	5 cut(s)	77, 215, 335, 1061, 1317
ScaI	AGTACT	2 cut(s)	1417, 1423
SchI	GAGTC	2 cut(s)	552, 839
ScrFI	CCNGG	4 cut(s)	339, 448, 759, 1202
SduI	GDGCHC	1 cut(s)	1223
SfaNI	GCATC	4 cut(s)	75, 631, 1017, 1134
SfcI	CTRYAG	3 cut(s)	17, 713, 1305
SinI	GGWCC	2 cut(s)	77, 1061
SmiMI	CAYNNNNRTG	2 cut(s)	323, 1056
SmlI	CTYRAG	2 cut(s)	615, 1224
SmoI	CTYRAG	2 cut(s)	615, 1224
SpeI	ACTAGT	4 cut(s)	1172, 1406, 1418, 1424
Sse9I	AATT	8 cut(s)	385, 438, 550, 772, 874, 889, 1133, 1377
SseBI	AGGCCT	1 cut(s)	907
SsiI	CCGC	2 cut(s)	815, 821
SspI	AATATT	1 cut(s)	1359
SspMI	CTAG	9 cut(s)	210, 701, 1065, 1071, 1173, 1407, 1413, 1419, 1425
StuI	AGGCCT	1 cut(s)	907
StyD4I	CCNGG	4 cut(s)	337, 446, 757, 1200
TaaI	ACNGT	4 cut(s)	122, 588, 634, 1244
TaqI	TCGA	1 cut(s)	132
TasI	AATT	8 cut(s)	385, 438, 550, 772, 874, 889, 1133, 1377
TatI	WGTACW	4 cut(s)	703, 1403, 1415, 1421
TfiI	GAWTC	4 cut(s)	96, 465, 1282, 1460
Tru1I	TTAA	5 cut(s)	111, 230, 390, 743, 1158
Tru9I	TTAA	5 cut(s)	111, 230, 390, 743, 1158
TscAI	CASTG	4 cut(s)	162, 477, 1120, 1317
TseFI	GTSAC	2 cut(s)	475, 532
Tsp45I	GTSAC	2 cut(s)	475, 532
TspDTI	ATGAA	6 cut(s)	45, 264, 398, 647, 1256, 1385
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	4 cut(s)	162, 477, 1120, 1317
VneI	GTGCAC	1 cut(s)	1219
VpaK11BI	GGWCC	2 cut(s)	77, 1061
XapI	RAATTY	2 cut(s)	385, 550
XceI	RCATGY	2 cut(s)	347, 1219
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	9 cut(s)	210, 701, 1065, 1071, 1173, 1407, 1413, 1419, 1425
ZrmI	AGTACT	2 cut(s)	1417, 1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.