Rh2CG644200

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006533
Physical Location & Seq
Forward (+)
81369720 .. 81372260
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG644200.1

Sequence Viewer

Length: 1449 bp
ATGTACAAGAACCAGCTGCAGGAGCTTGCACAGAGAAGCTGTTTCAACCTGCCTTCATATTCTTGCATCAGAGAAGGACCAAATCATGCACCAAGATTCAAAGCTTCTGTTAACTTCAACGGTGAGATCTTCGACAGCCCAAACTACTGCACCACACTGAGACAAGCAGAGCATTCTGCTGCTGAAGTAGCCCTCAATGTTCTTTCCACTAGAGGCCCTTCAAGGTCTTTAACTGCAAGAGTTCTTGATGAAACTGGAATATACAAAAACCTGCTTCAAGAAACTGCTCGCAGAGCTGGGCTGAAGCTGCCTGTATACACTATTGTGAGATCAGGGCCAGGGCATGTCCCAACTTTCACTTGTAGTGTAGAGCTTGCTGGCATGAATTTTAATGGGGAGGCAGCAAAGACCAAGAAGCAAGCTGAAAAGAATGCAGCAATTGCTGCCTGGTCTGCCTTGAAAAGAATCTCACTGGTGGCAGACAAAGAAGGAGAGAGTAGTGGTGATCAAGAACAGCAGGAGCAAGCAGTTGTGACAAGGCTGCTCTCAAACAAAGAAGACCATAGCAGACAGTTGAGGAGGAGACCAGATCCTCAAACTCAAGCAAGGAGAAGAACTGTGAGGGGTGCTCATAATCATAGTCATAGTTATAGGGACAACAATGCCTCCACCTCCACAAACTCTCTAGTACAGAACCTACAGCATTGGAGGCTCATAGATGATCTGTTAACGGATTTGGTTCCTCGAGTTTCAAGTAATTCACAGAAACAAAGCAGCTTTGCGTCTCTTCTCCCTCCACCGCCACCGCGAAAGGAGTCCAAGATTTTGCCACCAACAGCTACACTCAACAAATCAAACAATTCCTCCTACTACAATTCCAGTTATAATAGGCCTGTTCCTGTCCAAATGAGCGGCGGTGGTAGATCACAGGTTGTTCCACCTCCATTGGAAGACCACCAAAAGGATGAGGAAGAATGGCGTGGTACAAAGTCAGATAGCTTGATCAGTAAGATGCCCAATACTGAAAAGGAAGGACATAGTCCTAGCCCTAGTAATTATTTTTCAAATCCAAGCAGTCCTGTATTTGGTTCCAGTGTTGCACACATCAGGCAATTTCCTATGTCCCCAAATCCAGTTAAGGCACCAACTACTAGTGCAAGTGCAAGTTCAAGTTCCCTCCTGGGCAGAAGAAGCATGTACACTCAAGGGTTCAATCCTTACGGTCATAGGGTTGCCCCAGCAGTTCATATCAGATCGGTGATTCCTGTTTGTGCAGCACCATCTGTAGCAGTGAGGCCCTTAGTAGTAACTCCATCATACCCACCACCATTGCCAATATTACCAAGCATGAAAGAAACTTGTAGCACCAGTTCCGGTCCTGGTACTAGTGCTAGTACTAGTTCACAACCAGCAGCAGTAGCAGTCCTGAAAGAGAGTGATTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

482

Amino Acids

52.49

Weight (kDa)

9.66

Isoelectric Point (pI)

69.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 2 - 68 6e-15 Double-stranded RNA binding motif
dsrm PF00035 88 - 152 1.2e-15 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
Acc36I ACCTGC 2 cut(s) 57, 279
AccB1I GGYRCC 1 cut(s) 1141
AccBSI CCGCTC 1 cut(s) 912
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 808
AciI CCGC 4 cut(s) 800, 806, 912, 915
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 204, 323
AfaI GTAC 6 cut(s) 5, 690, 985, 1199, 1384, 1396
AfiI CCNNNNNNNGG 3 cut(s) 19, 961, 1085
AhlI ACTAGT 3 cut(s) 1151, 1385, 1397
AjnI CCWGG 4 cut(s) 337, 446, 1179, 1378
AleI CACNNNNGTG 1 cut(s) 323
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 3 cut(s) 154, 577, 789
AlwI GGATC 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 4 cut(s) 214, 335, 890, 1295
ApoI RAATTY 1 cut(s) 385
AspS9I GGNCC 5 cut(s) 77, 215, 335, 1296, 1376
AsuHPI GGTGA 3 cut(s) 134, 515, 1270
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 2 cut(s) 77, 1376
BanI GGYRCC 1 cut(s) 1141
BbsI GAAGAC 2 cut(s) 564, 957
Bbv12I GWGCWC 1 cut(s) 631
BccI CCATC 2 cut(s) 1288, 1321
BciT130I CCWGG 4 cut(s) 339, 448, 1181, 1380
BclI TGATCA 2 cut(s) 505, 1002
BcoDI GTCTC 3 cut(s) 154, 577, 789
BcuI ACTAGT 3 cut(s) 1151, 1385, 1397
BfaI CTAG 8 cut(s) 210, 686, 1044, 1050, 1152, 1386, 1392, 1398
BfmI CTRYAG 3 cut(s) 17, 698, 1284
BfuAI ACCTGC 2 cut(s) 57, 279
BglII AGATCT 1 cut(s) 126
BmcAI AGTACT 1 cut(s) 1396
Bme1390I CCNGG 4 cut(s) 339, 448, 1181, 1380
Bme18I GGWCC 2 cut(s) 77, 1376
BmeT110I CYCGRG 1 cut(s) 744
BmgT120I GGNCC 5 cut(s) 77, 215, 335, 1296, 1376
BmiI GGNNCC 3 cut(s) 741, 1090, 1143
BmrFI CCNGG 4 cut(s) 339, 448, 1181, 1380
BmsI GCATC 2 cut(s) 75, 1002
BpiI GAAGAC 2 cut(s) 564, 957
BplI GAGNNNNNCTC 2 cut(s) 613, 645
BpuEI CTTGAG 2 cut(s) 585, 1188
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 2 cut(s) 338, 1180
BsaWI WCCGGW 1 cut(s) 1373
BsaXI ACNNNNNCTCC 4 cut(s) 650, 680, 848, 878
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 961, 1085
Bse1I ACTGG 6 cut(s) 259, 477, 879, 1092, 1133, 1368
Bse3DI GCAATG 1 cut(s) 1328
BseBI CCWGG 4 cut(s) 339, 448, 1181, 1380
BseDI CCNNGG 2 cut(s) 338, 1180
BseGI GGATG 1 cut(s) 970
BseLI CCNNNNNNNGG 3 cut(s) 19, 961, 1085
BseMI GCAATG 1 cut(s) 1328
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 6 cut(s) 259, 477, 879, 1092, 1133, 1368
BseRI GAGGAG 2 cut(s) 592, 595
BseYI CCCAGC 2 cut(s) 296, 1237
BsgI GTGCAG 2 cut(s) 133, 1293
Bsh1236I CGCG 1 cut(s) 808
BshFI GGCC 4 cut(s) 216, 337, 892, 1297
BshNI GGYRCC 1 cut(s) 1141
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 1 cut(s) 1374
BslFI GGGAC 3 cut(s) 332, 668, 1108
BslI CCNNNNNNNGG 3 cut(s) 19, 961, 1085
BsmAI GTCTC 3 cut(s) 154, 577, 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 3 cut(s) 332, 668, 1108
BsmI GAATGC 2 cut(s) 172, 436
BsnI GGCC 4 cut(s) 216, 337, 892, 1297
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 631
Bsp1407I TGTACA 2 cut(s) 3, 1197
Bsp143I GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
BspACI CCGC 4 cut(s) 800, 806, 912, 915
BspANI GGCC 4 cut(s) 216, 337, 892, 1297
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 1 cut(s) 808
BspLI GGNNCC 3 cut(s) 741, 1090, 1143
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 2 cut(s) 57, 279
BspPI GGATC 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 1141
BspTNI GGTCTC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 912
BsrDI GCAATG 1 cut(s) 1328
BsrGI TGTACA 2 cut(s) 3, 1197
BsrI ACTGG 6 cut(s) 259, 477, 879, 1092, 1133, 1368
BssECI CCNNGG 2 cut(s) 338, 1180
BssMI GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
BssNAI GTATAC 1 cut(s) 316
Bst1107I GTATAC 1 cut(s) 316
Bst2UI CCWGG 4 cut(s) 339, 448, 1181, 1380
Bst4CI ACNGT 4 cut(s) 122, 573, 619, 1223
Bst6I CTCTTC 1 cut(s) 792
BstAPI GCANNNNNTGC 2 cut(s) 440, 443
BstAUI TGTACA 2 cut(s) 3, 1197
BstC8I GCNNGC 6 cut(s) 27, 289, 375, 379, 420, 525
BstDEI CTNAG 2 cut(s) 158, 1300
BstF5I GGATG 1 cut(s) 970
BstFNI CGCG 1 cut(s) 808
BstKTI GATC 8 cut(s) 129, 332, 508, 592, 724, 926, 1005, 1256
BstMAI GTCTC 3 cut(s) 154, 577, 789
BstMBI GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
BstNI CCWGG 4 cut(s) 339, 448, 1181, 1380
BstNSI RCATGY 2 cut(s) 347, 1198
BstSCI CCNGG 4 cut(s) 337, 446, 1179, 1378
BstSFI CTRYAG 3 cut(s) 17, 698, 1284
BstUI CGCG 1 cut(s) 808
BstV2I GAAGAC 2 cut(s) 564, 957
BstX2I RGATCY 2 cut(s) 126, 589
BstYI RGATCY 2 cut(s) 126, 589
BstZ17I GTATAC 1 cut(s) 316
BsuRI GGCC 4 cut(s) 216, 337, 892, 1297
BtsCI GGATG 1 cut(s) 970
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 4 cut(s) 155, 470, 1099, 1296
BveI ACCTGC 2 cut(s) 57, 279
Cac8I GCNNGC 6 cut(s) 27, 289, 375, 379, 420, 525
Cfr13I GGNCC 5 cut(s) 77, 215, 335, 1296, 1376
CseI GACGC 1 cut(s) 771
Csp6I GTAC 6 cut(s) 4, 689, 984, 1198, 1383, 1395
CspCI CAANNNNNGTGG 4 cut(s) 927, 962, 1311, 1346
CviAII CATG 6 cut(s) 86, 344, 382, 1195, 1348, 1446
CviQI GTAC 6 cut(s) 4, 689, 984, 1198, 1383, 1395
DdeI CTNAG 2 cut(s) 158, 1300
DpnI GATC 8 cut(s) 128, 331, 507, 591, 723, 925, 1004, 1255
DpnII GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 892
Eco31I GGTCTC 1 cut(s) 577
Eco47I GGWCC 2 cut(s) 77, 1376
Eco57I CTGAAG 2 cut(s) 204, 323
Eco88I CYCGRG 1 cut(s) 744
EcoO109I RGGNCCY 2 cut(s) 215, 1296
EcoRII CCWGG 4 cut(s) 337, 446, 1179, 1378
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 6 cut(s) 89, 347, 385, 1198, 1351, 1449
FaqI GGGAC 3 cut(s) 332, 668, 1108
FatI CATG 6 cut(s) 85, 343, 381, 1194, 1347, 1445
FbaI TGATCA 2 cut(s) 505, 1002
FblI GTMKAC 1 cut(s) 315
FokI GGATG 1 cut(s) 977
FspBI CTAG 8 cut(s) 210, 686, 1044, 1050, 1152, 1386, 1392, 1398
GsaI CCCAGC 2 cut(s) 300, 1241
HaeIII GGCC 4 cut(s) 216, 337, 892, 1297
HapII CCGG 1 cut(s) 1374
HgaI GACGC 1 cut(s) 771
Hin1II CATG 6 cut(s) 89, 347, 385, 1198, 1351, 1449
HincII GTYRAC 2 cut(s) 112, 729
HindII GTYRAC 2 cut(s) 112, 729
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 5 cut(s) 96, 465, 815, 1261, 1439
HpaI GTTAAC 2 cut(s) 112, 729
HpaII CCGG 1 cut(s) 1374
HphI GGTGA 3 cut(s) 134, 515, 1270
Hpy166II GTNNAC 5 cut(s) 112, 316, 729, 1200, 1403
Hpy188I TCNGA 3 cut(s) 71, 994, 1253
Hpy188III TCNNGA 4 cut(s) 245, 278, 509, 1426
Hpy8I GTNNAC 5 cut(s) 112, 316, 729, 1200, 1403
HpyAV CCTTC 5 cut(s) 63, 68, 228, 482, 1025
HpyCH4III ACNGT 4 cut(s) 122, 573, 619, 1223
HpyF3I CTNAG 2 cut(s) 158, 1300
Hsp92II CATG 6 cut(s) 89, 347, 385, 1198, 1351, 1449
Ksp22I TGATCA 2 cut(s) 505, 1002
KspAI GTTAAC 2 cut(s) 112, 729
Kzo9I GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
LmnI GCTCC 2 cut(s) 22, 520
LweI GCATC 2 cut(s) 75, 1002
MaeI CTAG 8 cut(s) 210, 686, 1044, 1050, 1152, 1386, 1392, 1398
MaeIII GTNAC 2 cut(s) 532, 1306
MalI GATC 8 cut(s) 128, 331, 507, 591, 723, 925, 1004, 1255
MbiI CCGCTC 1 cut(s) 912
MboI GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
MboII GAAGA 7 cut(s) 121, 569, 624, 779, 962, 983, 1200
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 2 cut(s) 126, 589
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 7 cut(s) 385, 438, 757, 859, 874, 1054, 1112
MlyI GAGTC 1 cut(s) 824
MseI TTAA 5 cut(s) 111, 230, 390, 728, 1137
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 1374
MspR9I CCNGG 4 cut(s) 339, 448, 1181, 1380
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 2 cut(s) 172, 436
MvaI CCWGG 4 cut(s) 339, 448, 1181, 1380
MvnI CGCG 1 cut(s) 808
NdeII GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
NlaIII CATG 6 cut(s) 89, 347, 385, 1198, 1351, 1449
NlaIV GGNNCC 3 cut(s) 741, 1090, 1143
NmuCI GTSAC 1 cut(s) 532
NspI RCATGY 2 cut(s) 347, 1198
OliI CACNNNNGTG 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 744
PceI AGGCCT 1 cut(s) 892
PctI GAATGC 2 cut(s) 172, 436
PfeI GAWTC 4 cut(s) 96, 465, 1261, 1439
PflFI GACNNNGTC 1 cut(s) 1038
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PsiI TTATAA 1 cut(s) 885
Psp6I CCWGG 4 cut(s) 337, 446, 1179, 1378
PspFI CCCAGC 2 cut(s) 296, 1237
PspGI CCWGG 4 cut(s) 337, 446, 1179, 1378
PspN4I GGNNCC 3 cut(s) 741, 1090, 1143
PspPI GGNCC 5 cut(s) 77, 215, 335, 1296, 1376
PspXI VCTCGAGB 1 cut(s) 744
PsrI GAACNNNNNNTAC 2 cut(s) 1354, 1386
PstI CTGCAG 1 cut(s) 21
PsuI RGATCY 2 cut(s) 126, 589
PsyI GACNNNGTC 1 cut(s) 1038
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 6 cut(s) 5, 690, 985, 1199, 1384, 1396
RsaNI GTAC 6 cut(s) 4, 689, 984, 1198, 1383, 1395
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 5 cut(s) 111, 230, 390, 728, 1137
Sau3AI GATC 8 cut(s) 126, 329, 505, 589, 721, 923, 1002, 1253
Sau96I GGNCC 5 cut(s) 77, 215, 335, 1296, 1376
ScaI AGTACT 1 cut(s) 1396
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 4 cut(s) 339, 448, 1181, 1380
SduI GDGCHC 1 cut(s) 631
SfaNI GCATC 2 cut(s) 75, 1002
SfcI CTRYAG 3 cut(s) 17, 698, 1284
Sfr274I CTCGAG 1 cut(s) 744
SinI GGWCC 2 cut(s) 77, 1376
SlaI CTCGAG 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 3 cut(s) 600, 744, 1203
SmoI CTYRAG 3 cut(s) 600, 744, 1203
SpeI ACTAGT 3 cut(s) 1151, 1385, 1397
Sse9I AATT 7 cut(s) 385, 438, 757, 859, 874, 1054, 1112
SseBI AGGCCT 1 cut(s) 892
SsiI CCGC 4 cut(s) 800, 806, 912, 915
SspI AATATT 1 cut(s) 1338
SspMI CTAG 8 cut(s) 210, 686, 1044, 1050, 1152, 1386, 1392, 1398
StuI AGGCCT 1 cut(s) 892
StyD4I CCNGG 4 cut(s) 337, 446, 1179, 1378
TaaI ACNGT 4 cut(s) 122, 573, 619, 1223
TaqI TCGA 2 cut(s) 132, 745
TasI AATT 7 cut(s) 385, 438, 757, 859, 874, 1054, 1112
TatI WGTACW 4 cut(s) 3, 688, 1197, 1394
TauI GCSGC 1 cut(s) 915
TfiI GAWTC 4 cut(s) 96, 465, 1261, 1439
Tru1I TTAA 5 cut(s) 111, 230, 390, 728, 1137
Tru9I TTAA 5 cut(s) 111, 230, 390, 728, 1137
TscAI CASTG 4 cut(s) 162, 477, 1099, 1296
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 5 cut(s) 45, 264, 398, 1235, 1364
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 4 cut(s) 162, 477, 1099, 1296
Tth111I GACNNNGTC 1 cut(s) 1038
VpaK11BI GGWCC 2 cut(s) 77, 1376
XapI RAATTY 1 cut(s) 385
XceI RCATGY 2 cut(s) 347, 1198
XhoI CTCGAG 1 cut(s) 744
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 8 cut(s) 210, 686, 1044, 1050, 1152, 1386, 1392, 1398
ZrmI AGTACT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.