Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006533

Physical Location & Seq

Genomic Coordinates Forward (+)

71351828 .. 71356026

Gene Structure 4199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0591000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATCCTTCAAGCTCTAGCTTTAGGGGATCCATCTGTAACAATTGAAGAAGTAACTCCCCCAGTTTTCGCTTCCGGAGCACTCTTCCCCACTGAGGAAAGAATTGTCGAACTCTTTGAGAAGAACACAAATTCTGTTGTTAACATTTTCGATGTAACATTGCGCCCTCAACTTAATGTAACTGGTGTGGTCGAGGTTCCCGAAGGAAATGGTTCAGGAGTAGTTTGGGATAAACAAGGACACATTGTAACGAACTATCATGTAATTGGTAATGCACTCTCAAGAAATCCAGGTCTTGGGCAGGTTGTTGCACGAGTTAACATTCTAGCATCGGAAGGGGTACAAAAGAATTTTGAGGGAACTCTAGTTGGTGCTGATCGTGCGAAGGATCTTGCTGTCTTGAAGGTAGAAGCCTCTGAAGATCTGTTGAGGCCTATTGTTGTGGGGCAGTCATCTTCTCTAAGAGTTGGGCAGCAATGTTTAGCAATTGGAAATCCATTTGGATTTGATCATACCCTTACTGTTGGAGTTATTAGTGGACTGAATCGAGACATTTTTAGTCAAGCAGGAGTCACCATTAATGGTGGAATTCAAACCGATGCAGCTATCAATCCTGGGAACAGTGGAGGACCCCTGCTAAACTCAAAAGGAAATTTGATTGGGATAAATACTGCAATATTTACTCAGACAGGTACATCAGCAGGTGTAGGATTTGCTATCCAATCATCAACTGTGCTAAAAATTGTCCCTCAGTTGATCCAATTCGGCAAAGTTGTTCGAGCTGGTTTGAATGTGGATATAGCTCCAGACCTGATTGCAAATCAACTCAATGTTCGTTATGGAGCTCTTATTTTACAGGTCCCTAAAAATAGTGTTGCGGCGAAGGCTGGCCTACTTCCTACCACAAGGGGATTTGCGGGTAACATAGTCCTCGGGGATGTCGTTGTTGGAGTTAACAACAAACCTGTTAAAAACCAAGCAGAGTTGAACAGCGTATTGGATGAATTTAGCGTGGGGGAGAAAGTAATCTTAAATATTCAGAGAAGCGGTGAAAATTTGGAGGTTCCCATAATATTAGAGGAAAAGAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

364

Amino Acids

38.11

Weight (kDa)

5.24

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	71 - 222	5.9e-30	Trypsin-like peptidase domain
Trypsin	PF00089	72 - 248	5.4e-18	Trypsin
PDZ_2	PF13180	277 - 357	9.3e-09	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26932 AT3G26932 AT3G26932 AT5G41070
fragaria_vesca	FvH4_6g04510 FvH4_6g53980
malus_domestica	MD09G1006600.v1.1 MD17G1010500.v1.1
prunus_persica	Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1
pyrus_communis	pycom111g00490 pycom17g00530
rosa_chinensis	RchiOBHm_Chr2g0176151
rosa_laevigata	RLG00000022385
rosa_multiflora	Rmu_co8195346.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076730
rosa_rugosa	Rorug02G0591000 Rorug02G0591000 Rorug02G0591100
rosa_samantha	Rh2AG669700 Rh2BG681300 Rh2CG644200 Rh2DG695000
rosa_wichuraiana	Rw2G054940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	692
Acc36I	ACCTGC	2 cut(s)	292, 692
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	3 cut(s)	878, 917, 1047
AclWI	GGATC	4 cut(s)	23, 36, 396, 751
AcsI	RAATTY	6 cut(s)	130, 349, 588, 652, 1004, 1054
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	342, 694
AfiI	CCNNNNNNNGG	2 cut(s)	94, 296
AgsI	TTSAA	6 cut(s)	11, 47, 403, 593, 790, 988
AjnI	CCWGG	2 cut(s)	289, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AluBI	AGCT	6 cut(s)	14, 20, 605, 782, 803, 845
AluI	AGCT	6 cut(s)	14, 20, 605, 782, 803, 845
Alw21I	GWGCWC	2 cut(s)	82, 847
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	4 cut(s)	23, 36, 396, 751
Ama87I	CYCGRG	1 cut(s)	932
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	2 cut(s)	431, 889
ApeKI	GCWGC	2 cut(s)	472, 602
ApoI	RAATTY	6 cut(s)	130, 349, 588, 652, 1004, 1054
AseI	ATTAAT	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	629, 859
AsuHPI	GGTGA	2 cut(s)	565, 1061
AvaI	CYCGRG	1 cut(s)	932
AvaII	GGWCC	2 cut(s)	629, 859
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	847
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	82, 847
BbvI	GCAGC	2 cut(s)	484, 614
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	291, 615
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	3 cut(s)	17, 326, 365
BfuAI	ACCTGC	2 cut(s)	292, 692
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	3 cut(s)	473, 603, 879
BlsI	GCNGC	3 cut(s)	474, 604, 880
Bme1390I	CCNGG	2 cut(s)	291, 615
Bme18I	GGWCC	2 cut(s)	629, 859
BmeT110I	CYCGRG	1 cut(s)	932
BmgT120I	GGNCC	2 cut(s)	629, 859
BmiI	GGNNCC	5 cut(s)	30, 198, 631, 861, 1065
BmrFI	CCNGG	2 cut(s)	291, 615
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	338, 589
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	614, 931
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 296
Bse1I	ACTGG	2 cut(s)	62, 187
Bse3DI	GCAATG	2 cut(s)	158, 482
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	291, 615
BseDI	CCNNGG	2 cut(s)	614, 931
BseGI	GGATG	2 cut(s)	943, 1006
BseLI	CCNNNNNNNGG	2 cut(s)	94, 296
BseMI	GCAATG	2 cut(s)	158, 482
BseMII	CTCAG	3 cut(s)	84, 698, 764
BseNI	ACTGG	2 cut(s)	62, 187
BseXI	GCAGC	2 cut(s)	484, 614
BshFI	GGCC	2 cut(s)	433, 891
BsiHKAI	GWGCWC	2 cut(s)	82, 847
BsiHKCI	CYCGRG	1 cut(s)	932
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	731, 845
BslI	CCNNNNNNNGG	2 cut(s)	94, 296
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	2 cut(s)	731, 845
BsnI	GGCC	2 cut(s)	433, 891
BsoBI	CYCGRG	1 cut(s)	932
Bsp1286I	GDGCHC	2 cut(s)	82, 847
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
BspACI	CCGC	3 cut(s)	878, 917, 1047
BspANI	GGCC	2 cut(s)	433, 891
BspCNI	CTCAG	3 cut(s)	85, 697, 763
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	5 cut(s)	30, 198, 631, 861, 1065
BspMI	ACCTGC	2 cut(s)	292, 692
BspPI	GGATC	4 cut(s)	23, 36, 396, 751
BsrDI	GCAATG	2 cut(s)	158, 482
BsrI	ACTGG	2 cut(s)	62, 187
BssECI	CCNNGG	2 cut(s)	614, 931
BssMI	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
BssSI	CACGAG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	291, 615
Bst4CI	ACNGT	3 cut(s)	523, 623, 733
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	889
BstDEI	CTNAG	4 cut(s)	93, 461, 684, 750
BstF5I	GGATG	2 cut(s)	943, 1006
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	7 cut(s)	6, 31, 379, 391, 424, 511, 759
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 380, 884
BstNI	CCWGG	2 cut(s)	291, 615
BstSCI	CCNGG	2 cut(s)	289, 613
BstV1I	GCAGC	2 cut(s)	484, 614
BstX2I	RGATCY	3 cut(s)	28, 388, 421
BstYI	RGATCY	3 cut(s)	28, 388, 421
BsuRI	GGCC	2 cut(s)	433, 891
BtsCI	GGATG	2 cut(s)	943, 1006
BtsIMutI	CAGTG	2 cut(s)	90, 628
BveI	ACCTGC	2 cut(s)	292, 692
Cac8I	GCNNGC	1 cut(s)	889
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	629, 859
Csp6I	GTAC	2 cut(s)	341, 693
CviAII	CATG	1 cut(s)	260
CviQI	GTAC	2 cut(s)	341, 693
DdeI	CTNAG	4 cut(s)	93, 461, 684, 750
DpnI	GATC	7 cut(s)	5, 30, 378, 390, 423, 510, 758
DpnII	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	845
Eco147I	AGGCCT	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	629, 859
Eco53kI	GAGCTC	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	932
EcoICRI	GAGCTC	1 cut(s)	845
EcoO109I	RGGNCCY	2 cut(s)	629, 859
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	289, 613
EcoT38I	GRGCYC	1 cut(s)	847
FaeI	CATG	1 cut(s)	263
FaiI	YATR	7 cut(s)	261, 513, 800, 840, 926, 1070, 1093
FaqI	GGGAC	2 cut(s)	731, 845
FatI	CATG	1 cut(s)	259
FauI	CCCGC	1 cut(s)	910
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	473, 603, 879
FokI	GGATG	2 cut(s)	950, 1013
FriOI	GRGCYC	1 cut(s)	847
Fsp4HI	GCNGC	3 cut(s)	473, 603, 879
FspBI	CTAG	3 cut(s)	17, 326, 365
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	473, 603, 879
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	433, 891
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HincII	GTYRAC	3 cut(s)	142, 319, 955
HindII	GTYRAC	3 cut(s)	142, 319, 955
HinfI	GANTC	2 cut(s)	544, 570
HpaI	GTTAAC	3 cut(s)	142, 319, 955
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	565, 1061
Hpy166II	GTNNAC	4 cut(s)	142, 319, 539, 955
Hpy188I	TCNGA	4 cut(s)	334, 418, 687, 1041
Hpy188III	TCNNGA	7 cut(s)	75, 200, 216, 282, 400, 548, 806
Hpy8I	GTNNAC	4 cut(s)	142, 319, 539, 955
HpyAV	CCTTC	6 cut(s)	17, 197, 329, 379, 397, 877
HpyCH4III	ACNGT	3 cut(s)	523, 623, 733
HpyCH4V	TGCA	5 cut(s)	275, 311, 602, 674, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 380, 884
HpyF3I	CTNAG	4 cut(s)	93, 461, 684, 750
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	163
Kpn2I	TCCGGA	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	508
KspAI	GTTAAC	3 cut(s)	142, 319, 955
Kzo9I	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
LmnI	GCTCC	3 cut(s)	77, 808, 842
Lsp1109I	GCAGC	2 cut(s)	484, 614
LweI	GCATC	2 cut(s)	338, 589
MaeI	CTAG	3 cut(s)	17, 326, 365
MaeIII	GTNAC	7 cut(s)	37, 52, 154, 178, 247, 571, 920
MalI	GATC	7 cut(s)	5, 30, 378, 390, 423, 510, 758
MboI	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
MboII	GAAGA	5 cut(s)	59, 76, 133, 431, 447
MfeI	CAATTG	2 cut(s)	42, 486
MflI	RGATCY	3 cut(s)	28, 388, 421
MhlI	GDGCHC	2 cut(s)	82, 847
MlyI	GAGTC	1 cut(s)	579
MmeI	TCCRAC	2 cut(s)	505, 928
MroI	TCCGGA	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	7 cut(s)	141, 174, 318, 579, 954, 969, 1031
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	291, 615
MunI	CAATTG	2 cut(s)	42, 486
MvaI	CCWGG	2 cut(s)	291, 615
MwoI	GCNNNNNNNGC	3 cut(s)	77, 380, 884
NdeII	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	5 cut(s)	30, 198, 631, 861, 1065
NmuCI	GTSAC	1 cut(s)	571
PaqCI	CACCTGC	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 939
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	474, 604, 880
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PpuMI	RGGWCCY	2 cut(s)	629, 859
PshBI	ATTAAT	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	847
Psp5II	RGGWCCY	2 cut(s)	629, 859
Psp6I	CCWGG	2 cut(s)	289, 613
PspGI	CCWGG	2 cut(s)	289, 613
PspN4I	GGNNCC	5 cut(s)	30, 198, 631, 861, 1065
PspPI	GGNCC	2 cut(s)	629, 859
PspPPI	RGGWCCY	2 cut(s)	629, 859
PsuI	RGATCY	3 cut(s)	28, 388, 421
RsaI	GTAC	2 cut(s)	342, 694
RsaNI	GTAC	2 cut(s)	341, 693
SacI	GAGCTC	1 cut(s)	847
SaqAI	TTAA	7 cut(s)	141, 174, 318, 579, 954, 969, 1031
SatI	GCNGC	3 cut(s)	473, 603, 879
Sau3AI	GATC	7 cut(s)	3, 28, 376, 388, 421, 508, 756
Sau96I	GGNCC	2 cut(s)	629, 859
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	2 cut(s)	291, 615
SduI	GDGCHC	2 cut(s)	82, 847
SfaNI	GCATC	2 cut(s)	338, 589
SinI	GGWCC	2 cut(s)	629, 859
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	3 cut(s)	878, 917, 1047
SspI	AATATT	3 cut(s)	678, 1036, 1074
SspMI	CTAG	3 cut(s)	17, 326, 365
SstI	GAGCTC	1 cut(s)	847
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	289, 613
TaaI	ACNGT	3 cut(s)	523, 623, 733
TaqI	TCGA	5 cut(s)	108, 150, 192, 547, 778
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	7 cut(s)	141, 174, 318, 579, 954, 969, 1031
Tru9I	TTAA	7 cut(s)	141, 174, 318, 579, 954, 969, 1031
TscAI	CASTG	2 cut(s)	97, 628
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	472, 602
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	2 cut(s)	1017, 1080
TspRI	CASTG	2 cut(s)	97, 628
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	629, 859
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	6 cut(s)	130, 349, 588, 652, 1004, 1054
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	3 cut(s)	17, 326, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.