AT5G41070

dsRNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006533
Physical Location & Seq
Forward (+)
16438265 .. 16440055
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41070.1

Sequence Viewer

Length: 1182 bp
ATGTATAAGAATCAGCTTCAAGAGCTTGCACAGAGAAGTTGTTTCAACTTACCATCATATACTTGCATAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTTCTGTTAACTTCAATGGTGAGATATTTGAGAGTCCCACTTACTGTTCTACTCTCAGACAAGCTGAGCATGCAGCTGCTGAAGTTTCCCTTAATGTCCTTTCGTCTAGAGTCCCTTCAAAGTCTCTAACTGCTAAGATTCTTGATGAGACAGGGATTTACAAGAACCTGCTTCAAGAGACAGCACATAGAGCTGGTCTTGATCTACCAATGTACACAAGTGTGAGATCAGGATCTTGTCACTTCCCAGGTTTCTCTTGTACTGTTGAACTTGCTGGGATGACGTTTACAGGAGAATCAGCAAAGACAAAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTTGGTCCTCTTTGAAGAAAATGTCAAGCTTGGATTCACAAGATGAAGAGAAGGAACAAGAAGCAGTAGCAAGAGTACTCTCAAGATTTAAACCCAAAGAAGTAAGAAGACGAGAGACAACAAACCAATGGAGAAGAAGAACAAGTCAACAAGATTCAAACAAGGATTTGTTGATTGAGAGATTGAGATGGATCAATCTTTTGACCAATCAAGCTTCTTCATCATCATCAACATCAACACCGAATCAACACAAAAACTCCAGTTTCATCTCTCTAATTCCCCCACCACCACCACCTAAATCCTCCAAAATTTTGCCATTTATCCAGCAATACAAAGACAGATCATCACAAGAAGCTAAGACAGAGACAGCGACAGAGATGATCAACAGCAAAGCCAAAGTCAATGAAACATCAACCAGATTGAGTAAGCAAATGCCCTTTTCCGACATGAACAGATACAACTTTGTCGGAGGGTGTAGCGTAAACCCTTATAGTCTGGCTCCAGCGGTTCAAATGAGATCAGTGATTCCAGTTTTCGCAGCTCCACCACCGAAACCAAACCCCAACCTTAACCCATCATCATTATCATCATCAGTCAATGAATTCACCTCATCCAATAATTCCTGCTCTGTTCTGAATACGCCGGGATTGGGAGGCCAAGAGAAGAAGAATCTAACTCGCGAAATGATCAAACTTGGTTCAGAATCGAGAATTTTGGATCAAACCCATGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

393

Amino Acids

43.63

Weight (kDa)

9.39

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 2 - 68 1.7e-15 Double-stranded RNA binding motif
dsrm PF00035 88 - 153 6.5e-16 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 279
AccII CGCG 1 cut(s) 1125
AciI CCGC 1 cut(s) 950
AclWI GGATC 3 cut(s) 343, 644, 1170
AcsI RAATTY 3 cut(s) 753, 1046, 1155
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 3 cut(s) 317, 364, 522
AfiI CCNNNNNNNGG 1 cut(s) 1094
AjnI CCWGG 1 cut(s) 349
AleI CACNNNNGTG 1 cut(s) 323
Alw26I GTCTC 5 cut(s) 231, 245, 275, 554, 803
AlwI GGATC 3 cut(s) 343, 644, 1170
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 1099
ApeKI GCWGC 5 cut(s) 176, 179, 434, 443, 983
ApoI RAATTY 3 cut(s) 753, 1046, 1155
ArsI GACNNNNNNTTYG 2 cut(s) 828, 860
AspS9I GGNCC 2 cut(s) 77, 450
AsuC2I CCSGG 1 cut(s) 1089
AsuHPI GGTGA 2 cut(s) 134, 1042
AvaII GGWCC 2 cut(s) 77, 450
BbsI GAAGAC 1 cut(s) 559
BbvI GCAGC 5 cut(s) 166, 188, 446, 455, 995
BccI CCATC 3 cut(s) 61, 627, 1027
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 2 cut(s) 825, 1131
BcnI CCSGG 1 cut(s) 1089
BcoDI GTCTC 5 cut(s) 231, 245, 275, 554, 803
BfaI CTAG 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 279
BisI GCNGC 5 cut(s) 177, 180, 435, 444, 984
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 5 cut(s) 178, 181, 436, 445, 985
BmcAI AGTACT 1 cut(s) 522
Bme1390I CCNGG 2 cut(s) 351, 1089
Bme18I GGWCC 2 cut(s) 77, 450
BmgT120I GGNCC 2 cut(s) 77, 450
BmiI GGNNCC 1 cut(s) 945
BmrFI CCNGG 2 cut(s) 351, 1089
BpiI GAAGAC 1 cut(s) 559
BpmI CTGGAG 2 cut(s) 688, 930
Bpu1102I GCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 1089
BsaBI GATNNNNATC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 1 cut(s) 1094
Bse1I ACTGG 2 cut(s) 705, 974
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 334
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 387, 1055
BseJI GATNNNNATC 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 1094
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 3 cut(s) 159, 172, 414
BseNI ACTGG 2 cut(s) 705, 974
BseXI GCAGC 5 cut(s) 166, 188, 446, 455, 995
BseYI CCCAGC 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 1125
BshFI GGCC 1 cut(s) 1101
BsiSI CCGG 1 cut(s) 1088
BslFI GGGAC 2 cut(s) 123, 200
BslI CCNNNNNNNGG 1 cut(s) 1094
BsmAI GTCTC 5 cut(s) 231, 245, 275, 554, 803
BsmFI GGGAC 2 cut(s) 123, 200
BsnI GGCC 1 cut(s) 1101
Bsp1407I TGTACA 1 cut(s) 315
Bsp1720I GCTNAGC 1 cut(s) 168
Bsp68I TCGCGA 1 cut(s) 1125
BspACI CCGC 1 cut(s) 950
BspANI GGCC 1 cut(s) 1101
BspCNI CTCAG 3 cut(s) 160, 171, 415
BspFNI CGCG 1 cut(s) 1125
BspLI GGNNCC 1 cut(s) 945
BspMI ACCTGC 1 cut(s) 279
BspPI GGATC 3 cut(s) 343, 644, 1170
BsrDI GCAATG 1 cut(s) 438
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 2 cut(s) 705, 974
BssECI CCNNGG 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 149, 367
Bst6I CTCTTC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 27, 174
BstDEI CTNAG 5 cut(s) 158, 168, 237, 423, 801
BstF5I GGATG 2 cut(s) 387, 1055
BstFNI CGCG 1 cut(s) 1125
BstMAI GTCTC 5 cut(s) 231, 245, 275, 554, 803
BstMWI GCNNNNNNNGC 5 cut(s) 22, 173, 293, 440, 443
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 349, 1087
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 5 cut(s) 166, 188, 446, 455, 995
BstV2I GAAGAC 1 cut(s) 559
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 1 cut(s) 1101
BtsCI GGATG 2 cut(s) 387, 1055
BtsIMutI CAGTG 1 cut(s) 972
BtuMI TCGCGA 1 cut(s) 1125
BveI ACCTGC 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 27, 174
CaiI CAGNNNCTG 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 77, 450
Csp6I GTAC 3 cut(s) 316, 363, 521
CviAII CATG 4 cut(s) 86, 173, 892, 1172
CviQI GTAC 3 cut(s) 316, 363, 521
DdeI CTNAG 5 cut(s) 158, 168, 237, 423, 801
DraI TTTAAA 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco47I GGWCC 2 cut(s) 77, 450
Eco57I CTGAAG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 4 cut(s) 89, 176, 895, 1175
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 2 cut(s) 123, 200
FatI CATG 4 cut(s) 85, 172, 891, 1171
FbaI TGATCA 2 cut(s) 825, 1131
Fnu4HI GCNGC 5 cut(s) 177, 180, 435, 444, 984
FokI GGATG 2 cut(s) 394, 1042
Fsp4HI GCNGC 5 cut(s) 177, 180, 435, 444, 984
FspBI CTAG 1 cut(s) 210
GluI GCNGC 5 cut(s) 177, 180, 435, 444, 984
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 2 cut(s) 688, 930
HaeIII GGCC 1 cut(s) 1101
HapII CCGG 1 cut(s) 1088
Hin1II CATG 4 cut(s) 89, 176, 895, 1175
HincII GTYRAC 2 cut(s) 112, 593
HindII GTYRAC 2 cut(s) 112, 593
HindIII AAGCTT 3 cut(s) 102, 472, 657
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 1 cut(s) 1088
HphI GGTGA 2 cut(s) 134, 1042
Hpy166II GTNNAC 5 cut(s) 112, 318, 390, 593, 928
Hpy188I TCNGA 5 cut(s) 161, 889, 914, 1080, 1147
Hpy188III TCNNGA 9 cut(s) 20, 210, 245, 278, 302, 333, 528, 1124, 1152
Hpy8I GTNNAC 5 cut(s) 112, 318, 390, 593, 928
HpyAV CCTTC 3 cut(s) 68, 228, 490
HpyCH4III ACNGT 2 cut(s) 149, 367
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 4 cut(s) 29, 66, 176, 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 173, 293, 440, 443
HpyF3I CTNAG 5 cut(s) 158, 168, 237, 423, 801
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 4 cut(s) 89, 176, 895, 1175
Ksp22I TGATCA 2 cut(s) 825, 1131
KspAI GTTAAC 1 cut(s) 112
LmnI GCTCC 3 cut(s) 94, 949, 991
Lsp1109I GCAGC 5 cut(s) 166, 188, 446, 455, 995
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 341
MboII GAAGA 8 cut(s) 472, 503, 564, 591, 594, 654, 1120, 1123
MflI RGATCY 1 cut(s) 335
MluCI AATT 5 cut(s) 720, 753, 1046, 1063, 1155
MlyI GAGTC 2 cut(s) 145, 222
MmeI TCCRAC 2 cut(s) 892, 912
MnlI CCTC 5 cut(s) 463, 757, 908, 1063, 1091
MseI TTAA 4 cut(s) 111, 195, 534, 1014
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 179, 950
MspI CCGG 1 cut(s) 1088
MspR9I CCNGG 2 cut(s) 351, 1089
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 5 cut(s) 22, 173, 293, 440, 443
NciI CCSGG 1 cut(s) 1089
NlaIII CATG 4 cut(s) 89, 176, 895, 1175
NlaIV GGNNCC 1 cut(s) 945
NmuCI GTSAC 1 cut(s) 341
NruI TCGCGA 1 cut(s) 1125
NspI RCATGY 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 323
PaeI GCATGC 1 cut(s) 176
PkrI GCNGC 5 cut(s) 178, 181, 436, 445, 985
PleI GAGTC 2 cut(s) 144, 221
PpsI GAGTC 2 cut(s) 144, 221
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 945
PspPI GGNCC 2 cut(s) 77, 450
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 179
RruI TCGCGA 1 cut(s) 1125
RsaI GTAC 3 cut(s) 317, 364, 522
RsaNI GTAC 3 cut(s) 316, 363, 521
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 4 cut(s) 111, 195, 534, 1014
SatI GCNGC 5 cut(s) 177, 180, 435, 444, 984
Sau96I GGNCC 2 cut(s) 77, 450
ScaI AGTACT 1 cut(s) 522
SchI GAGTC 2 cut(s) 145, 222
ScrFI CCNGG 2 cut(s) 351, 1089
SinI GGWCC 2 cut(s) 77, 450
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
SphI GCATGC 1 cut(s) 176
Sse9I AATT 5 cut(s) 720, 753, 1046, 1063, 1155
SsiI CCGC 1 cut(s) 950
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 349, 1087
TaaI ACNGT 2 cut(s) 149, 367
TaiI ACGT 1 cut(s) 389
TaqI TCGA 1 cut(s) 1151
TasI AATT 5 cut(s) 720, 753, 1046, 1063, 1155
TatI WGTACW 3 cut(s) 315, 362, 520
Tru1I TTAA 4 cut(s) 111, 195, 534, 1014
Tru9I TTAA 4 cut(s) 111, 195, 534, 1014
TscAI CASTG 1 cut(s) 972
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 5 cut(s) 176, 179, 434, 443, 983
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 6 cut(s) 504, 654, 700, 864, 908, 1059
TspRI CASTG 1 cut(s) 972
VpaK11BI GGWCC 2 cut(s) 77, 450
XapI RAATTY 3 cut(s) 753, 1046, 1155
XbaI TCTAGA 1 cut(s) 209
XceI RCATGY 1 cut(s) 176
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.