Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006533

Physical Location & Seq

Genomic Coordinates Forward (+)

26965825 .. 26968911

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G310400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGTATTTTGTGAAAGGCGATATCATGTATAAGAACCAGCTGCAGGAGCTTGCACAGAGAAGCTGTTTCAACCTCCCTTCCTATGCGTGCATCAGACAAGGACCAGATCATGCACCCAGATTCAAAGCTTCTGTCAACTTCAACGGTGAGATCTTTGAAAGCCCAAACTACTGCACCACATTGAGACAAGCAGAGCACGCAGCTGCAGAAGTAGCCCTCAATAAACTCTCCACAAGAGGCCCTTCCAGGTCTCTCACTGCAAGAGTTCTTGATGAAACTGGAATTTACAAAAACCTCCTTCAAGAAACCGCTCACAGAGCTGGGCTGAAGCTCCCTGTGTACACCACCGTAAGATCAGGTCCTGGCCATGTCCCAGTTTTCACTTGTACTGTAGAGCTTGCTGGCATGAGTTTTACAGGTGAGGCAGCCAAAACCAAGAAGCAAGCCGAGAAGAATGCTGCAATTGCAGCATGGTCTGCCTTGAAAAGAAGCATGGGGCCATTGACAGCTAAAGAAGCAGAAGAACAGGACCAGGCAGTTGTGACAGGGGTGCTCTCAAATTTTAGACCCAAAGATGATCACAATAGCAAACAATTTATAAGGAGGAGAGATCAAATTCAAGCAAGGAGAAGAATGGTCAGGGGCCAATGCCACAGAGACAATACTATTGCTTCTGCATCATCATCTCCATCATCATTATCCTCCACATCCAGTGCTGCTAACTCTCTACAGAATCAACACTGGAGGCTGATAGATCTGTTAACAGATTTGGTTCCAGAAGTTTCAAAGCAGAAGCAAAACAGCTTTGCATCTCTGCTTCCTCCACCCCCACCAAGAACAGCCTCAAAGATTTTGCCACCAACTACACTGCTCAACAAAGACAACTCCTCTTCCTACACATTATCCAATTCCAATTATAGGCCTATCCCAGTACTACAAGTTAATGTGAGGAGGGGATCACAAGTTATTCCACCTCCATTGGAAGACCACCAAAGGGATGAGGAAGAATGGCTTGGTACTGGAAAATCAGATATCATTATTAGTAACAACAAGGCCATTGAAAAGGAGGTTCCTAGTAATTCAAATTCAAGTTCTGCATATAGGCAATTTCCTGTGTCTAATACTGGAAGGCAATTTCCATTAGGTCCAATGAAGGCATTGCCTACAAGTAGCCACATGAAGGACCGAGCCATGTACACTGGAGGTTTCAGCCCGCACAGGATTGCCCCTGCAGTTCAAATCAGATCAGTGATCCCAGTTTGTGCAGCACCACCAGCACCACAATCAAACCCATCAAGAATGATGTCAATGAAAGACACTTCACAGGCAGCCTTAAGTGCTTCTTCTTCTTCTACAAATTCAGGGCCCATGCAACCAGGAACAGAGGTCCCCTCGTCAGCCAGCTCAAAGTTCAACATGCCCGAGTCAAGCTCAACTCAGCTGGGTTCTGAGTTCAACAAGCTACAGTTAGGAGGAGGAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

496

Amino Acids

53.95

Weight (kDa)

9.68

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26932 AT3G26932 AT3G26932 AT5G41070
fragaria_vesca	FvH4_6g04510 FvH4_6g53980
malus_domestica	MD09G1006600.v1.1 MD17G1010500.v1.1
prunus_persica	Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1
pyrus_communis	pycom111g00490 pycom17g00530
rosa_chinensis	RchiOBHm_Chr2g0176151
rosa_laevigata	RLG00000022385
rosa_multiflora	Rmu_co8195346.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076730
rosa_rugosa	Rorug02G0591000 Rorug02G0591000 Rorug02G0591100
rosa_samantha	Rh2AG669700 Rh2BG681300 Rh2CG644200 Rh2DG695000
rosa_wichuraiana	Rw2G054940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	311
AciI	CCGC	2 cut(s)	309, 1214
AclWI	GGATC	2 cut(s)	964, 1246
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	5 cut(s)	282, 559, 615, 1084, 1357
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	5 cut(s)	341, 388, 933, 1018, 1196
AfiI	CCNNNNNNNGG	4 cut(s)	43, 918, 994, 1180
AflII	CTTAAG	1 cut(s)	1333
AjnI	CCWGG	4 cut(s)	245, 361, 531, 1375
AjuI	GAANNNNNNNTTGG	2 cut(s)	996, 1028
Alw21I	GWGCWC	2 cut(s)	198, 555
Alw26I	GTCTC	3 cut(s)	178, 255, 651
AlwI	GGATC	2 cut(s)	964, 1246
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	1421
AoxI	GGCC	7 cut(s)	238, 364, 497, 643, 920, 1053, 1364
ApaI	GGGCCC	1 cut(s)	1368
ApeKI	GCWGC	9 cut(s)	40, 200, 203, 425, 458, 467, 716, 1265, 1328
ApoI	RAATTY	5 cut(s)	282, 559, 615, 1084, 1357
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AsuHPI	GGTGA	2 cut(s)	158, 431
AvaI	CYCGRG	1 cut(s)	1421
AvaII	GGWCC	6 cut(s)	101, 359, 529, 1145, 1183, 1387
BaeGI	GKGCMC	1 cut(s)	1368
BalI	TGGCCA	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	1368
BbsI	GAAGAC	1 cut(s)	990
Bbv12I	GWGCWC	2 cut(s)	198, 555
BbvI	GCAGC	9 cut(s)	27, 190, 212, 437, 445, 479, 703, 1277, 1340
BccI	CCATC	2 cut(s)	697, 1300
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	4 cut(s)	247, 363, 533, 1377
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	3 cut(s)	178, 255, 651
BfaI	CTAG	1 cut(s)	1074
BfmI	CTRYAG	6 cut(s)	41, 204, 390, 728, 1230, 1463
BfrI	CTTAAG	1 cut(s)	1333
BglII	AGATCT	2 cut(s)	150, 754
BisI	GCNGC	9 cut(s)	41, 201, 204, 426, 459, 468, 717, 1266, 1329
BlsI	GCNGC	9 cut(s)	42, 202, 205, 427, 460, 469, 718, 1267, 1330
BmcAI	AGTACT	1 cut(s)	933
Bme1390I	CCNGG	4 cut(s)	247, 363, 533, 1377
Bme18I	GGWCC	6 cut(s)	101, 359, 529, 1145, 1183, 1387
BmeT110I	CYCGRG	1 cut(s)	1421
BmiI	GGNNCC	6 cut(s)	498, 644, 774, 1071, 1366, 1389
BmrFI	CCNGG	4 cut(s)	247, 363, 533, 1377
BmrI	ACTGGG	3 cut(s)	368, 923, 1250
BmsI	GCATC	3 cut(s)	99, 686, 818
BmuI	ACTGGG	3 cut(s)	368, 923, 1250
BpiI	GAAGAC	1 cut(s)	990
BplI	GAGNNNNNCTC	4 cut(s)	1376, 1408, 1415, 1447
BpmI	CTGGAG	2 cut(s)	763, 1221
BsaI	GGTCTC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 918, 994, 1180
Bse1I	ACTGG	9 cut(s)	283, 374, 711, 746, 929, 1024, 1129, 1204, 1256
Bse3DI	GCAATG	1 cut(s)	1157
BseBI	CCWGG	4 cut(s)	247, 363, 533, 1377
BseGI	GGATG	2 cut(s)	707, 1003
BseLI	CCNNNNNNNGG	4 cut(s)	43, 918, 994, 1180
BseMI	GCAATG	1 cut(s)	1157
BseMII	CTCAG	2 cut(s)	1440, 1451
BseNI	ACTGG	9 cut(s)	283, 374, 711, 746, 929, 1024, 1129, 1204, 1256
BseRI	GAGGAG	4 cut(s)	619, 877, 964, 1488
BseSI	GKGCMC	1 cut(s)	1368
BseXI	GCAGC	9 cut(s)	27, 190, 212, 437, 445, 479, 703, 1277, 1340
BseYI	CCCAGC	2 cut(s)	320, 1441
BsgI	GTGCAG	2 cut(s)	157, 1284
BshFI	GGCC	7 cut(s)	240, 366, 499, 645, 922, 1055, 1366
BsiHKAI	GWGCWC	2 cut(s)	198, 555
BsiHKCI	CYCGRG	1 cut(s)	1421
BslFI	GGGAC	2 cut(s)	356, 1373
BslI	CCNNNNNNNGG	4 cut(s)	43, 918, 994, 1180
BsmAI	GTCTC	3 cut(s)	178, 255, 651
BsmFI	GGGAC	2 cut(s)	356, 1373
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	7 cut(s)	240, 366, 499, 645, 922, 1055, 1366
Bso31I	GGTCTC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	1421
Bsp120I	GGGCCC	1 cut(s)	1364
Bsp1286I	GDGCHC	3 cut(s)	198, 555, 1368
Bsp1407I	TGTACA	2 cut(s)	339, 1194
Bsp143I	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
BspACI	CCGC	2 cut(s)	309, 1214
BspANI	GGCC	7 cut(s)	240, 366, 499, 645, 922, 1055, 1366
BspCNI	CTCAG	2 cut(s)	1441, 1450
BspLI	GGNNCC	6 cut(s)	498, 644, 774, 1071, 1366, 1389
BspMAI	CTGCAG	3 cut(s)	45, 208, 1234
BspPI	GGATC	2 cut(s)	964, 1246
BspTI	CTTAAG	1 cut(s)	1333
BspTNI	GGTCTC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	1157
BsrGI	TGTACA	2 cut(s)	339, 1194
BsrI	ACTGG	9 cut(s)	283, 374, 711, 746, 929, 1024, 1129, 1204, 1256
BssMI	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
Bst2UI	CCWGG	4 cut(s)	247, 363, 533, 1377
Bst4CI	ACNGT	4 cut(s)	146, 349, 391, 1467
Bst6I	CTCTTC	1 cut(s)	895
BstAFI	CTTAAG	1 cut(s)	1333
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstAUI	TGTACA	2 cut(s)	339, 1194
BstC8I	GCNNGC	8 cut(s)	51, 88, 198, 399, 403, 444, 1214, 1402
BstDEI	CTNAG	2 cut(s)	1437, 1449
BstF5I	GGATG	2 cut(s)	707, 1003
BstKTI	GATC	9 cut(s)	109, 153, 356, 580, 613, 757, 959, 1247, 1254
BstMAI	GTCTC	3 cut(s)	178, 255, 651
BstMBI	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
BstNI	CCWGG	4 cut(s)	247, 363, 533, 1377
BstNSI	RCATGY	1 cut(s)	1420
BstSCI	CCNGG	4 cut(s)	245, 361, 531, 1375
BstSFI	CTRYAG	6 cut(s)	41, 204, 390, 728, 1230, 1463
BstSLI	GKGCMC	1 cut(s)	1368
BstV1I	GCAGC	9 cut(s)	27, 190, 212, 437, 445, 479, 703, 1277, 1340
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	2 cut(s)	150, 754
BstYI	RGATCY	2 cut(s)	150, 754
BsuRI	GGCC	7 cut(s)	240, 366, 499, 645, 922, 1055, 1366
BtsCI	GGATG	2 cut(s)	707, 1003
BtsI	GCAGTG	2 cut(s)	255, 866
BtsIMutI	CAGTG	6 cut(s)	255, 718, 739, 866, 1197, 1254
Cac8I	GCNNGC	8 cut(s)	51, 88, 198, 399, 403, 444, 1214, 1402
CaiI	CAGNNNCTG	1 cut(s)	362
Csp6I	GTAC	5 cut(s)	340, 387, 932, 1017, 1195
CspCI	CAANNNNNGTGG	2 cut(s)	960, 995
CviQI	GTAC	5 cut(s)	340, 387, 932, 1017, 1195
DdeI	CTNAG	2 cut(s)	1437, 1449
DpnI	GATC	9 cut(s)	108, 152, 355, 579, 612, 756, 958, 1246, 1253
DpnII	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	895
EarI	CTCTTC	1 cut(s)	895
Eco147I	AGGCCT	1 cut(s)	922
Eco24I	GRGCYC	1 cut(s)	1368
Eco31I	GGTCTC	1 cut(s)	255
Eco32I	GATATC	2 cut(s)	22, 1033
Eco47I	GGWCC	6 cut(s)	101, 359, 529, 1145, 1183, 1387
Eco57I	CTGAAG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	1421
EcoO109I	RGGNCCY	4 cut(s)	239, 359, 1364, 1387
EcoRII	CCWGG	4 cut(s)	245, 361, 531, 1375
EcoRV	GATATC	2 cut(s)	22, 1033
EcoT38I	GRGCYC	1 cut(s)	1368
FalI	AAGNNNNNCTT	6 cut(s)	226, 258, 996, 1028, 1327, 1359
FaqI	GGGAC	2 cut(s)	356, 1373
FauI	CCCGC	1 cut(s)	1221
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	9 cut(s)	41, 201, 204, 426, 459, 468, 717, 1266, 1329
FokI	GGATG	2 cut(s)	694, 1010
FriOI	GRGCYC	1 cut(s)	1368
Fsp4HI	GCNGC	9 cut(s)	41, 201, 204, 426, 459, 468, 717, 1266, 1329
FspBI	CTAG	1 cut(s)	1074
GluI	GCNGC	9 cut(s)	41, 201, 204, 426, 459, 468, 717, 1266, 1329
GsaI	CCCAGC	2 cut(s)	324, 1445
GsuI	CTGGAG	2 cut(s)	763, 1221
HaeIII	GGCC	7 cut(s)	240, 366, 499, 645, 922, 1055, 1366
HincII	GTYRAC	2 cut(s)	136, 762
HindII	GTYRAC	2 cut(s)	136, 762
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	3 cut(s)	120, 733, 1424
HpaI	GTTAAC	1 cut(s)	762
HphI	GGTGA	2 cut(s)	158, 431
Hpy166II	GTNNAC	5 cut(s)	136, 340, 342, 762, 1197
Hpy188I	TCNGA	4 cut(s)	95, 1030, 1244, 1450
Hpy188III	TCNNGA	4 cut(s)	269, 302, 776, 1296
Hpy8I	GTNNAC	5 cut(s)	136, 340, 342, 762, 1197
HpyAV	CCTTC	6 cut(s)	87, 252, 308, 1122, 1147, 1174
HpyCH4III	ACNGT	4 cut(s)	146, 349, 391, 1467
HpyF3I	CTNAG	2 cut(s)	1437, 1449
Ksp22I	TGATCA	1 cut(s)	577
KspAI	GTTAAC	1 cut(s)	762
Kzo9I	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
LmnI	GCTCC	2 cut(s)	46, 336
Lsp1109I	GCAGC	9 cut(s)	27, 190, 212, 437, 445, 479, 703, 1277, 1340
LweI	GCATC	3 cut(s)	99, 686, 818
MaeI	CTAG	1 cut(s)	1074
MaeIII	GTNAC	2 cut(s)	541, 1043
MalI	GATC	9 cut(s)	108, 152, 355, 579, 612, 756, 958, 1246, 1253
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
MboII	GAAGA	9 cut(s)	463, 533, 642, 882, 995, 1016, 1335, 1338, 1341
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	2 cut(s)	150, 754
MhlI	GDGCHC	3 cut(s)	198, 555, 1368
MlsI	TGGCCA	1 cut(s)	366
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	1433
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	3 cut(s)	761, 942, 1334
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	3 cut(s)	40, 203, 1441
MspCI	CTTAAG	1 cut(s)	1333
MspR9I	CCNGG	4 cut(s)	247, 363, 533, 1377
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	4 cut(s)	247, 363, 533, 1377
NdeII	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
NlaIV	GGNNCC	6 cut(s)	498, 644, 774, 1071, 1366, 1389
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	1420
PceI	AGGCCT	1 cut(s)	922
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	120, 733
PkrI	GCNGC	9 cut(s)	42, 202, 205, 427, 460, 469, 718, 1267, 1330
PleI	GAGTC	1 cut(s)	1432
PpsI	GAGTC	1 cut(s)	1432
PpuMI	RGGWCCY	2 cut(s)	359, 1387
PsiI	TTATAA	1 cut(s)	599
Psp5II	RGGWCCY	2 cut(s)	359, 1387
Psp6I	CCWGG	4 cut(s)	245, 361, 531, 1375
PspFI	CCCAGC	2 cut(s)	320, 1441
PspGI	CCWGG	4 cut(s)	245, 361, 531, 1375
PspN4I	GGNNCC	6 cut(s)	498, 644, 774, 1071, 1366, 1389
PspOMI	GGGCCC	1 cut(s)	1364
PspPPI	RGGWCCY	2 cut(s)	359, 1387
PstI	CTGCAG	3 cut(s)	45, 208, 1234
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	150, 754
PvuII	CAGCTG	3 cut(s)	40, 203, 1441
RsaI	GTAC	5 cut(s)	341, 388, 933, 1018, 1196
RsaNI	GTAC	5 cut(s)	340, 387, 932, 1017, 1195
SaqAI	TTAA	3 cut(s)	761, 942, 1334
SatI	GCNGC	9 cut(s)	41, 201, 204, 426, 459, 468, 717, 1266, 1329
Sau3AI	GATC	9 cut(s)	106, 150, 353, 577, 610, 754, 956, 1244, 1251
ScaI	AGTACT	1 cut(s)	933
SchI	GAGTC	1 cut(s)	1433
ScrFI	CCNGG	4 cut(s)	247, 363, 533, 1377
SduI	GDGCHC	3 cut(s)	198, 555, 1368
SfaNI	GCATC	3 cut(s)	99, 686, 818
SfcI	CTRYAG	6 cut(s)	41, 204, 390, 728, 1230, 1463
SinI	GGWCC	6 cut(s)	101, 359, 529, 1145, 1183, 1387
SmlI	CTYRAG	1 cut(s)	1333
SmoI	CTYRAG	1 cut(s)	1333
SseBI	AGGCCT	1 cut(s)	922
SsiI	CCGC	2 cut(s)	309, 1214
SspMI	CTAG	1 cut(s)	1074
StuI	AGGCCT	1 cut(s)	922
StyD4I	CCNGG	4 cut(s)	245, 361, 531, 1375
TaaI	ACNGT	4 cut(s)	146, 349, 391, 1467
TaqII	GACCGA	1 cut(s)	1200
TatI	WGTACW	4 cut(s)	339, 386, 931, 1194
TfiI	GAWTC	2 cut(s)	120, 733
Tru1I	TTAA	3 cut(s)	761, 942, 1334
Tru9I	TTAA	3 cut(s)	761, 942, 1334
TscAI	CASTG	6 cut(s)	262, 718, 746, 873, 1204, 1254
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	9 cut(s)	40, 200, 203, 425, 458, 467, 716, 1265, 1328
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	4 cut(s)	288, 1166, 1193, 1325
TspRI	CASTG	6 cut(s)	262, 718, 746, 873, 1204, 1254
Vha464I	CTTAAG	1 cut(s)	1333
VpaK11BI	GGWCC	6 cut(s)	101, 359, 529, 1145, 1183, 1387
XapI	RAATTY	5 cut(s)	282, 559, 615, 1084, 1357
XceI	RCATGY	1 cut(s)	1420
XspI	CTAG	1 cut(s)	1074
ZrmI	AGTACT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.