Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006533

Physical Location & Seq

Genomic Coordinates Reverse (-)

482529 .. 484814

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGTATAAGAACCAGCTGCAGGAGCTTGCACAGAGAAGCTGTTTCAACCTGCCTTCATATTCTTGCATCAGAGAAGGACCAAATCATGCGCCAAGATTCAAAGCTTCTGTTAACTTCAACGGTGAGATTTTCGACAGCCCAAACTACTGCACCACACTGAGACAAGCAGAGCATTCTGCTGCTGAAGTAGCCCTCATTGTTCTTTCCACTAGAGTCCCTTCAAGGTCTTTAACTGCAAGAGTTCTTGATGAAACTGGAATATACAAAAACCTACTTCAAGAAACTGCTCACAGAGCTGGGCTGAAGCTGCCTGTATACACTACTGTGAGATCAGGGCCAGGGCATGTCCCAACTTTCACTTGTAGTGTAGAGCTTGCTGGCATGAGTTTTAATGGGGAGGCAGCAAAGACCAAGAAGCAAGCTGAGAAGAATGCAGCAATTGCTGCCTGGTCTGCCTTGAAAAGAAATTTGGGGTCAGTCTCACTGGTGACAAACAAAGAAGGAGGGAATAGTGGTGATCAAGAACAGCAGGAGCAAGCAGTTGTGACAAGGCTGCTCTCAAATTTTAGACTCTCAAACAAAGAAGACCATAGCAGGCAGTTGAGGAGGAGACCAGATCATCAAACTCAAGTAAGGAGAAGAACTGTGAGGGGTGCTCATAATCATAGTCATAGTTATAGGGACAACAATGCCTCCACCTCTACAAACTCTCTAGTACAGAACCTACAGCATTGGAGGCTCATAGATGATCTGCTAACGGATTTGGTTCCTCGAATTTCAAGTAATTCACAGAAACAATGCAGCTTTGAGTATCTTCTCCCTCCACCGCCACCGCGAAAGGAGTCCAAGATTTTTCCACCAACAGCTACACTCAACAAATCAGACAATTCCTCCTACTACAATTCCAATTATAATAGGCCTATTCCTGTCCAAATGAGGGGTAGTGGTAGATCACAGGTTGTTCCACCTCCTCCATCGGAAGACCACCAAAACGATGAGGAAGAATGGCTTGGTACAAAATCAGCTAGCTTGATCAGTAAGAAGCCCAATAGTGAAAGGGAAGGTCGTAGTCCTAGCCCTGGTAATTATTTTTCAAATCCAAGCAGTCCTGTATTTGGTTCCAGTGTTGCACACAGCAGGCAATTTCCAATGTCCCCAAATCCAGTTAAGGCACCAATTAGTGCAACTACAAGTTCAAGTTCGCTCCTGGGTAGAAGAAGCATGTACACTCAAGGGTTCAACCCTTACAGTCATAGGGTTGCCCCAGCAGTTCATATCAGATCGGTGATTCCTGTTTGTGCAGCACCATCTGTAGCAGTGAGGCCATCAGTAGTAACTCCATCAAACCCACCACCATTACCAATATTACCAAGAATGAAAGAAACTAGTAGTACCAGTCCCAGTTCTGGTACTAGTGCTAGTACTAGTTCACAACTAGCAGTACTTCTTGAAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

486

Amino Acids

53.43

Weight (kDa)

9.84

Isoelectric Point (pI)

63.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	2 - 67	3.9e-14	Double-stranded RNA binding motif
dsrm	PF00035	88 - 152	7.8e-16	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26932 AT3G26932 AT3G26932 AT5G41070
fragaria_vesca	FvH4_6g04510 FvH4_6g53980
malus_domestica	MD09G1006600.v1.1 MD17G1010500.v1.1
prunus_persica	Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1 Prupe.3G310400_v2.0.a1
pyrus_communis	pycom111g00490 pycom17g00530
rosa_chinensis	RchiOBHm_Chr2g0176151
rosa_laevigata	RLG00000022385
rosa_multiflora	Rmu_co8195346.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076730
rosa_rugosa	Rorug02G0591000 Rorug02G0591000 Rorug02G0591100
rosa_samantha	Rh2AG669700 Rh2BG681300 Rh2CG644200 Rh2DG695000
rosa_wichuraiana	Rw2G054940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
Acc36I	ACCTGC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	1171
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	835
AciI	CCGC	2 cut(s)	827, 833
AcsI	RAATTY	3 cut(s)	466, 562, 774
AcuI	CTGAAG	2 cut(s)	204, 323
AfaI	GTAC	7 cut(s)	717, 1015, 1226, 1393, 1411, 1423, 1443
AfiI	CCNNNNNNNGG	5 cut(s)	19, 937, 1079, 1115, 1406
AhlI	ACTAGT	3 cut(s)	1385, 1412, 1424
AjnI	CCWGG	4 cut(s)	337, 446, 1078, 1206
AjuI	GAANNNNNNNTTGG	4 cut(s)	452, 484, 993, 1025
AleI	CACNNNNGTG	1 cut(s)	323
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	3 cut(s)	154, 484, 604
AoxI	GGCC	3 cut(s)	335, 917, 1322
ApeKI	GCWGC	9 cut(s)	16, 179, 307, 401, 434, 443, 553, 801, 1301
ApoI	RAATTY	3 cut(s)	466, 562, 774
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	77, 335
AsuHPI	GGTGA	4 cut(s)	134, 499, 527, 1297
AsuNHI	GCTAGC	1 cut(s)	1025
AvaII	GGWCC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	1171
BbsI	GAAGAC	2 cut(s)	591, 987
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	9 cut(s)	3, 166, 294, 413, 430, 446, 540, 813, 1313
BccI	CCATC	4 cut(s)	982, 1315, 1333, 1348
BciT130I	CCWGG	4 cut(s)	339, 448, 1080, 1208
BclI	TGATCA	2 cut(s)	517, 1032
BcoDI	GTCTC	3 cut(s)	154, 484, 604
BcuI	ACTAGT	3 cut(s)	1385, 1412, 1424
BfaI	CTAG	9 cut(s)	210, 713, 1026, 1074, 1386, 1413, 1419, 1425, 1436
BfmI	CTRYAG	3 cut(s)	17, 725, 1311
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	9 cut(s)	17, 180, 308, 402, 435, 444, 554, 802, 1302
BlsI	GCNGC	9 cut(s)	18, 181, 309, 403, 436, 445, 555, 803, 1303
BmcAI	AGTACT	2 cut(s)	1423, 1443
Bme1390I	CCNGG	4 cut(s)	339, 448, 1080, 1208
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	77, 335
BmiI	GGNNCC	3 cut(s)	768, 1120, 1173
BmrFI	CCNGG	4 cut(s)	339, 448, 1080, 1208
BmrI	ACTGGG	1 cut(s)	1395
BmsI	GCATC	1 cut(s)	75
BmtI	GCTAGC	1 cut(s)	1029
BmuI	ACTGGG	1 cut(s)	1395
BpiI	GAAGAC	2 cut(s)	591, 987
BplI	GAGNNNNNCTC	2 cut(s)	640, 672
BpuEI	CTTGAG	2 cut(s)	612, 1215
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	338, 1078, 1207
BsaXI	ACNNNNNCTCC	4 cut(s)	677, 707, 875, 905
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 937, 1079, 1115, 1406
Bse1I	ACTGG	6 cut(s)	259, 489, 1122, 1163, 1395, 1401
BseBI	CCWGG	4 cut(s)	339, 448, 1080, 1208
BseDI	CCNNGG	3 cut(s)	338, 1078, 1207
BseLI	CCNNNNNNNGG	5 cut(s)	19, 937, 1079, 1115, 1406
BseMII	CTCAG	2 cut(s)	149, 414
BseNI	ACTGG	6 cut(s)	259, 489, 1122, 1163, 1395, 1401
BseRI	GAGGAG	3 cut(s)	619, 622, 960
BseXI	GCAGC	9 cut(s)	3, 166, 294, 413, 430, 446, 540, 813, 1313
BseYI	CCCAGC	2 cut(s)	296, 1264
BsgI	GTGCAG	2 cut(s)	133, 1320
Bsh1236I	CGCG	1 cut(s)	835
BshFI	GGCC	3 cut(s)	337, 919, 1324
BshNI	GGYRCC	1 cut(s)	1171
BsiHKAI	GWGCWC	1 cut(s)	658
BslFI	GGGAC	5 cut(s)	200, 332, 695, 1138, 1383
BslI	CCNNNNNNNGG	5 cut(s)	19, 937, 1079, 1115, 1406
BsmAI	GTCTC	3 cut(s)	154, 484, 604
BsmFI	GGGAC	5 cut(s)	200, 332, 695, 1138, 1383
BsmI	GAATGC	2 cut(s)	172, 436
BsnI	GGCC	3 cut(s)	337, 919, 1324
Bso31I	GGTCTC	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp1407I	TGTACA	1 cut(s)	1224
Bsp143I	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
BspACI	CCGC	2 cut(s)	827, 833
BspANI	GGCC	3 cut(s)	337, 919, 1324
BspCNI	CTCAG	2 cut(s)	150, 415
BspFNI	CGCG	1 cut(s)	835
BspLI	GGNNCC	3 cut(s)	768, 1120, 1173
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	57
BspOI	GCTAGC	1 cut(s)	1029
BspT107I	GGYRCC	1 cut(s)	1171
BspTNI	GGTCTC	1 cut(s)	604
BsrGI	TGTACA	1 cut(s)	1224
BsrI	ACTGG	6 cut(s)	259, 489, 1122, 1163, 1395, 1401
BssECI	CCNNGG	3 cut(s)	338, 1078, 1207
BssMI	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
BssNAI	GTATAC	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	316
Bst2UI	CCWGG	4 cut(s)	339, 448, 1080, 1208
Bst4CI	ACNGT	4 cut(s)	122, 325, 646, 1250
BstAPI	GCANNNNNTGC	2 cut(s)	440, 443
BstAUI	TGTACA	1 cut(s)	1224
BstC8I	GCNNGC	8 cut(s)	27, 375, 379, 420, 537, 596, 1027, 1139
BstDEI	CTNAG	2 cut(s)	158, 423
BstFNI	CGCG	1 cut(s)	835
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	7 cut(s)	332, 520, 619, 751, 953, 1035, 1283
BstMAI	GTCTC	3 cut(s)	154, 484, 604
BstMBI	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 188, 293, 307, 440, 443, 452, 736
BstNI	CCWGG	4 cut(s)	339, 448, 1080, 1208
BstNSI	RCATGY	2 cut(s)	347, 1225
BstSCI	CCNGG	4 cut(s)	337, 446, 1078, 1206
BstSFI	CTRYAG	3 cut(s)	17, 725, 1311
BstUI	CGCG	1 cut(s)	835
BstV1I	GCAGC	9 cut(s)	3, 166, 294, 413, 430, 446, 540, 813, 1313
BstV2I	GAAGAC	2 cut(s)	591, 987
BstZ17I	GTATAC	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	337, 919, 1324
BtsI	GCAGTG	1 cut(s)	1323
BtsIMutI	CAGTG	4 cut(s)	155, 482, 1129, 1323
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	8 cut(s)	27, 375, 379, 420, 537, 596, 1027, 1139
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	77, 335
Csp6I	GTAC	7 cut(s)	716, 1014, 1225, 1392, 1410, 1422, 1442
CviAII	CATG	4 cut(s)	86, 344, 382, 1222
CviQI	GTAC	7 cut(s)	716, 1014, 1225, 1392, 1410, 1422, 1442
DdeI	CTNAG	2 cut(s)	158, 423
DpnI	GATC	7 cut(s)	331, 519, 618, 750, 952, 1034, 1282
DpnII	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
Eco147I	AGGCCT	1 cut(s)	919
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	204, 323
EcoRII	CCWGG	4 cut(s)	337, 446, 1078, 1206
FaeI	CATG	4 cut(s)	89, 347, 385, 1225
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FaqI	GGGAC	5 cut(s)	200, 332, 695, 1138, 1383
FatI	CATG	4 cut(s)	85, 343, 381, 1221
FbaI	TGATCA	2 cut(s)	517, 1032
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	9 cut(s)	17, 180, 308, 402, 435, 444, 554, 802, 1302
Fsp4HI	GCNGC	9 cut(s)	17, 180, 308, 402, 435, 444, 554, 802, 1302
FspBI	CTAG	9 cut(s)	210, 713, 1026, 1074, 1386, 1413, 1419, 1425, 1436
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	9 cut(s)	17, 180, 308, 402, 435, 444, 554, 802, 1302
GsaI	CCCAGC	2 cut(s)	300, 1268
HaeIII	GGCC	3 cut(s)	337, 919, 1324
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	89, 347, 385, 1225
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	5 cut(s)	96, 213, 570, 842, 1288
HpaI	GTTAAC	1 cut(s)	112
HphI	GGTGA	4 cut(s)	134, 499, 527, 1297
Hpy166II	GTNNAC	4 cut(s)	112, 316, 1227, 1430
Hpy188I	TCNGA	4 cut(s)	71, 883, 979, 1280
Hpy188III	TCNNGA	4 cut(s)	245, 278, 521, 1448
Hpy8I	GTNNAC	4 cut(s)	112, 316, 1227, 1430
HpyAV	CCTTC	5 cut(s)	63, 68, 228, 494, 1055
HpyCH4III	ACNGT	4 cut(s)	122, 325, 646, 1250
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 188, 293, 307, 440, 443, 452, 736
HpyF3I	CTNAG	2 cut(s)	158, 423
Hsp92II	CATG	4 cut(s)	89, 347, 385, 1225
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	2 cut(s)	517, 1032
KspAI	GTTAAC	1 cut(s)	112
Kzo9I	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
LmnI	GCTCC	3 cut(s)	22, 532, 1209
Lsp1109I	GCAGC	9 cut(s)	3, 166, 294, 413, 430, 446, 540, 813, 1313
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	9 cut(s)	210, 713, 1026, 1074, 1386, 1413, 1419, 1425, 1436
MaeIII	GTNAC	3 cut(s)	487, 544, 1333
MalI	GATC	7 cut(s)	331, 519, 618, 750, 952, 1034, 1282
MboI	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
MboII	GAAGA	7 cut(s)	439, 596, 651, 806, 992, 1013, 1227
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	658
MlyI	GAGTC	3 cut(s)	222, 564, 851
MseI	TTAA	4 cut(s)	111, 230, 390, 1167
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	16
MspR9I	CCNGG	4 cut(s)	339, 448, 1080, 1208
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	2 cut(s)	172, 436
MvaI	CCWGG	4 cut(s)	339, 448, 1080, 1208
MvnI	CGCG	1 cut(s)	835
MwoI	GCNNNNNNNGC	8 cut(s)	22, 188, 293, 307, 440, 443, 452, 736
NdeII	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
NheI	GCTAGC	1 cut(s)	1025
NlaIII	CATG	4 cut(s)	89, 347, 385, 1225
NlaIV	GGNNCC	3 cut(s)	768, 1120, 1173
NmuCI	GTSAC	2 cut(s)	487, 544
NspI	RCATGY	2 cut(s)	347, 1225
OliI	CACNNNNGTG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	919
PctI	GAATGC	2 cut(s)	172, 436
PfeI	GAWTC	2 cut(s)	96, 1288
PkrI	GCNGC	9 cut(s)	18, 181, 309, 403, 436, 445, 555, 803, 1303
PleI	GAGTC	3 cut(s)	221, 564, 850
PpsI	GAGTC	3 cut(s)	221, 564, 850
PsiI	TTATAA	1 cut(s)	912
Psp6I	CCWGG	4 cut(s)	337, 446, 1078, 1206
PspFI	CCCAGC	2 cut(s)	296, 1264
PspGI	CCWGG	4 cut(s)	337, 446, 1078, 1206
PspN4I	GGNNCC	3 cut(s)	768, 1120, 1173
PspPI	GGNCC	2 cut(s)	77, 335
PstI	CTGCAG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	7 cut(s)	717, 1015, 1226, 1393, 1411, 1423, 1443
RsaNI	GTAC	7 cut(s)	716, 1014, 1225, 1392, 1410, 1422, 1442
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	4 cut(s)	111, 230, 390, 1167
SatI	GCNGC	9 cut(s)	17, 180, 308, 402, 435, 444, 554, 802, 1302
Sau3AI	GATC	7 cut(s)	329, 517, 616, 748, 950, 1032, 1280
Sau96I	GGNCC	2 cut(s)	77, 335
ScaI	AGTACT	2 cut(s)	1423, 1443
SchI	GAGTC	3 cut(s)	222, 564, 851
ScrFI	CCNGG	4 cut(s)	339, 448, 1080, 1208
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	3 cut(s)	17, 725, 1311
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	627, 1230
SmoI	CTYRAG	2 cut(s)	627, 1230
SpeI	ACTAGT	3 cut(s)	1385, 1412, 1424
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	2 cut(s)	827, 833
SspI	AATATT	1 cut(s)	1365
SspMI	CTAG	9 cut(s)	210, 713, 1026, 1074, 1386, 1413, 1419, 1425, 1436
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	4 cut(s)	337, 446, 1078, 1206
TaaI	ACNGT	4 cut(s)	122, 325, 646, 1250
TaqI	TCGA	2 cut(s)	132, 772
TatI	WGTACW	4 cut(s)	715, 1224, 1421, 1441
TfiI	GAWTC	2 cut(s)	96, 1288
Tru1I	TTAA	4 cut(s)	111, 230, 390, 1167
Tru9I	TTAA	4 cut(s)	111, 230, 390, 1167
TscAI	CASTG	4 cut(s)	162, 489, 1129, 1323
TseFI	GTSAC	2 cut(s)	487, 544
TseI	GCWGC	9 cut(s)	16, 179, 307, 401, 434, 443, 553, 801, 1301
Tsp45I	GTSAC	2 cut(s)	487, 544
TspDTI	ATGAA	4 cut(s)	45, 264, 1262, 1391
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	4 cut(s)	162, 489, 1129, 1323
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	3 cut(s)	466, 562, 774
XceI	RCATGY	2 cut(s)	347, 1225
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	9 cut(s)	210, 713, 1026, 1074, 1386, 1413, 1419, 1425, 1436
ZrmI	AGTACT	2 cut(s)	1423, 1443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.