Rh2AG669700

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006533
Physical Location & Seq
Forward (+)
88377848 .. 88382247
4400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG669700.1

Sequence Viewer

Length: 1233 bp
ATGTGTATATTATATATGATGAAGGATGAAACTGGAATATACAAAAACCTGCTTCAAGAAACTGCTCGCAGAGCTGGGCTGAAGCTGCCTGTATACACTAATGTGAGATCAGGGCCAGGGCATGTCCCAACTTTCACTTGTAGTGTAGAGCTTGCTGGCATGAATTTTAATGGGGAGGCAGCAAAGACCAAGAAGCAAGCTGAAAAGAATGCAGCAATTGCTGCCTGGTCTGCCTTGAAAAGAATCTCACTGGTGGCAAACAAAGAAGGAGAGAGTAGTGGTGATCAAGAACAGCAGGAGCGAGCAGTTGTGACAAGGCTGCTCTCAAACAAAGAAGACCGTAGCAGACAGTTGAGGAGGAGACCAGATCCTCAAACTCAAGCAAGGAGAAGAACTGTGAGGGGTGCTCATAATCATAGTCATAGTTATAGGGACAACAATGCCTCCACCTCCACAAACTCTCTAGTACAGAACCTACAGCATTGGAGGCTCATAGATGATCTGTTAACGGATTTGGTTCCTCGAGTTTCAAGTAATTCACAGAAACAAACCAGCTTTGCGTCTCTTCTCCCTCCACCGCCACCGCGAAAGGAGTCCAAGATTTTGCCACCAACAGCTACACTCAACAAATCAAACAATTCCTCCTACTACAATTCCAGTTATAATAGGCCTGTTCCTGTCCAAATGAGGGGTAGTGGTAGATCACAGGTTGTTCCACCTCCATTGGAAGACCACCAAAAGGATGAGGAAGAATGGCGTGGTACAAAGTCAGATAGCTTGATCAGTAAGATGCCCAATACTGAAAAGGAAGGTCATAGTCCTAGCCCTAGTAATTATTTTTCAAATCCAAGCAGCCCTGTATTTGGTTCCAGTGTTGCACACATCAGGCAATTTCCTATGTCCCCAAATCCAGTTAAGGCACCAACTACTAGTGCAAGTGCAAGTTCAAGTTCAAGTTCCCTCCTGGGCAGAAGAAGGATGTACACTCAAGGGTTCAATCCTCACGGTCATAGGGTTGCCCCAGCAGTTCATATCAGATCGGTGATTCCTGTTTGTGCAGCACCATCTGTAGCAGTGAGACCCTTAGTAGTAACTCCATCATACCCACCACCATTACCGATATTACCAAGAATGAAAGAAACTTGTAGTACCAGTCCCAGTCCTGGTACTAGTGCTAGTACTAGTTCACAACCAGCAGCAGTAGCAGTCCTGAAAGAGAGTGATTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

410

Amino Acids

44.83

Weight (kDa)

10.03

Isoelectric Point (pI)

71.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 14 - 78 1.4e-15 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
Acc36I ACCTGC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 919
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 586
AciI CCGC 2 cut(s) 578, 584
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 6 cut(s) 468, 763, 983, 1150, 1168, 1180
AfiI CCNNNNNNNGG 4 cut(s) 688, 739, 863, 1163
AgsI TTSAA 7 cut(s) 56, 238, 531, 843, 948, 954, 997
AhlI ACTAGT 3 cut(s) 929, 1169, 1181
AjnI CCWGG 4 cut(s) 115, 224, 963, 1162
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 7 cut(s) 74, 85, 151, 200, 555, 617, 777
AluI AGCT 7 cut(s) 74, 85, 151, 200, 555, 617, 777
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 3 cut(s) 355, 567, 1072
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 2 cut(s) 113, 668
ApeKI GCWGC 8 cut(s) 85, 179, 212, 221, 319, 852, 1058, 1196
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 293, 1054
AvaI CYCGRG 1 cut(s) 522
BanI GGYRCC 1 cut(s) 919
BbsI GAAGAC 2 cut(s) 342, 735
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 8 cut(s) 72, 191, 208, 224, 306, 864, 1070, 1208
BccI CCATC 2 cut(s) 1072, 1105
BciT130I CCWGG 4 cut(s) 117, 226, 965, 1164
BclI TGATCA 2 cut(s) 283, 780
BcoDI GTCTC 3 cut(s) 355, 567, 1072
BcuI ACTAGT 3 cut(s) 929, 1169, 1181
BfaI CTAG 7 cut(s) 464, 822, 828, 930, 1170, 1176, 1182
BfmI CTRYAG 2 cut(s) 476, 1068
BfuAI ACCTGC 1 cut(s) 57
BisI GCNGC 8 cut(s) 86, 180, 213, 222, 320, 853, 1059, 1197
BlsI GCNGC 8 cut(s) 87, 181, 214, 223, 321, 854, 1060, 1198
BmcAI AGTACT 1 cut(s) 1180
Bme1390I CCNGG 4 cut(s) 117, 226, 965, 1164
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 3 cut(s) 519, 868, 921
BmrFI CCNGG 4 cut(s) 117, 226, 965, 1164
BmrI ACTGGG 1 cut(s) 1152
BmsI GCATC 1 cut(s) 780
BmuI ACTGGG 1 cut(s) 1152
BpiI GAAGAC 2 cut(s) 342, 735
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpuEI CTTGAG 2 cut(s) 363, 972
BsaI GGTCTC 2 cut(s) 355, 1072
BsaJI CCNNGG 2 cut(s) 116, 964
BsaXI ACNNNNNCTCC 4 cut(s) 428, 458, 626, 656
Bsc4I CCNNNNNNNGG 4 cut(s) 688, 739, 863, 1163
Bse1I ACTGG 7 cut(s) 37, 255, 657, 870, 911, 1152, 1158
BseBI CCWGG 4 cut(s) 117, 226, 965, 1164
BseDI CCNNGG 2 cut(s) 116, 964
BseGI GGATG 3 cut(s) 31, 748, 984
BseLI CCNNNNNNNGG 4 cut(s) 688, 739, 863, 1163
BseNI ACTGG 7 cut(s) 37, 255, 657, 870, 911, 1152, 1158
BseRI GAGGAG 2 cut(s) 370, 373
BseXI GCAGC 8 cut(s) 72, 191, 208, 224, 306, 864, 1070, 1208
BseYI CCCAGC 2 cut(s) 74, 1021
BsgI GTGCAG 1 cut(s) 1077
Bsh1236I CGCG 1 cut(s) 586
BshFI GGCC 2 cut(s) 115, 670
BshNI GGYRCC 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 522
BslFI GGGAC 4 cut(s) 110, 446, 886, 1140
BslI CCNNNNNNNGG 4 cut(s) 688, 739, 863, 1163
BsmAI GTCTC 3 cut(s) 355, 567, 1072
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 4 cut(s) 110, 446, 886, 1140
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 115, 670
Bso31I GGTCTC 2 cut(s) 355, 1072
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
BspACI CCGC 2 cut(s) 578, 584
BspANI GGCC 2 cut(s) 115, 670
BspFNI CGCG 1 cut(s) 586
BspLI GGNNCC 3 cut(s) 519, 868, 921
BspMI ACCTGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 919
BspTNI GGTCTC 2 cut(s) 355, 1072
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 7 cut(s) 37, 255, 657, 870, 911, 1152, 1158
BssECI CCNNGG 2 cut(s) 116, 964
BssMI GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
BssNAI GTATAC 1 cut(s) 94
Bst1107I GTATAC 1 cut(s) 94
Bst2UI CCWGG 4 cut(s) 117, 226, 965, 1164
Bst4CI ACNGT 4 cut(s) 341, 351, 397, 1007
Bst6I CTCTTC 1 cut(s) 570
BstAPI GCANNNNNTGC 2 cut(s) 218, 221
BstAUI TGTACA 1 cut(s) 981
BstC8I GCNNGC 5 cut(s) 67, 153, 157, 198, 303
BstDEI CTNAG 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 31, 748, 984
BstFNI CGCG 1 cut(s) 586
BstKTI GATC 7 cut(s) 110, 286, 370, 502, 704, 783, 1040
BstMAI GTCTC 3 cut(s) 355, 567, 1072
BstMBI GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
BstMWI GCNNNNNNNGC 7 cut(s) 71, 85, 218, 221, 230, 487, 1202
BstNI CCWGG 4 cut(s) 117, 226, 965, 1164
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 4 cut(s) 115, 224, 963, 1162
BstSFI CTRYAG 2 cut(s) 476, 1068
BstUI CGCG 1 cut(s) 586
BstV1I GCAGC 8 cut(s) 72, 191, 208, 224, 306, 864, 1070, 1208
BstV2I GAAGAC 2 cut(s) 342, 735
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BstZ17I GTATAC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 115, 670
BtsCI GGATG 3 cut(s) 31, 748, 984
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 3 cut(s) 248, 877, 1080
BveI ACCTGC 1 cut(s) 57
Cac8I GCNNGC 5 cut(s) 67, 153, 157, 198, 303
Cfr13I GGNCC 1 cut(s) 113
CseI GACGC 1 cut(s) 549
Csp6I GTAC 6 cut(s) 467, 762, 982, 1149, 1167, 1179
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 3 cut(s) 122, 160, 1230
CviQI GTAC 6 cut(s) 467, 762, 982, 1149, 1167, 1179
DdeI CTNAG 1 cut(s) 1084
DpnI GATC 7 cut(s) 109, 285, 369, 501, 703, 782, 1039
DpnII GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco147I AGGCCT 1 cut(s) 670
Eco31I GGTCTC 2 cut(s) 355, 1072
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 522
EcoRII CCWGG 4 cut(s) 115, 224, 963, 1162
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 3 cut(s) 125, 163, 1233
FaqI GGGAC 4 cut(s) 110, 446, 886, 1140
FatI CATG 3 cut(s) 121, 159, 1229
FbaI TGATCA 2 cut(s) 283, 780
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 8 cut(s) 86, 180, 213, 222, 320, 853, 1059, 1197
FokI GGATG 3 cut(s) 38, 755, 991
Fsp4HI GCNGC 8 cut(s) 86, 180, 213, 222, 320, 853, 1059, 1197
FspBI CTAG 7 cut(s) 464, 822, 828, 930, 1170, 1176, 1182
GluI GCNGC 8 cut(s) 86, 180, 213, 222, 320, 853, 1059, 1197
GsaI CCCAGC 2 cut(s) 78, 1025
HaeIII GGCC 2 cut(s) 115, 670
HgaI GACGC 1 cut(s) 549
Hin1II CATG 3 cut(s) 125, 163, 1233
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 4 cut(s) 243, 593, 1045, 1223
HpaI GTTAAC 1 cut(s) 507
HphI GGTGA 2 cut(s) 293, 1054
Hpy166II GTNNAC 4 cut(s) 94, 507, 984, 1187
Hpy188I TCNGA 2 cut(s) 772, 1037
Hpy188III TCNNGA 3 cut(s) 56, 287, 1210
Hpy8I GTNNAC 4 cut(s) 94, 507, 984, 1187
HpyAV CCTTC 4 cut(s) 16, 260, 803, 969
HpyCH4III ACNGT 4 cut(s) 341, 351, 397, 1007
HpyCH4V TGCA 5 cut(s) 212, 878, 935, 941, 1058
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 85, 218, 221, 230, 487, 1202
HpyF3I CTNAG 1 cut(s) 1084
Hsp92II CATG 3 cut(s) 125, 163, 1233
Ksp22I TGATCA 2 cut(s) 283, 780
KspAI GTTAAC 1 cut(s) 507
Kzo9I GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 8 cut(s) 72, 191, 208, 224, 306, 864, 1070, 1208
LweI GCATC 1 cut(s) 780
MaeI CTAG 7 cut(s) 464, 822, 828, 930, 1170, 1176, 1182
MaeIII GTNAC 2 cut(s) 310, 1090
MalI GATC 7 cut(s) 109, 285, 369, 501, 703, 782, 1039
MboI GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
MboII GAAGA 6 cut(s) 347, 402, 557, 740, 761, 984
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 7 cut(s) 163, 216, 535, 637, 652, 832, 890
MlyI GAGTC 1 cut(s) 602
MseI TTAA 3 cut(s) 168, 506, 915
MslI CAYNNNNRTG 1 cut(s) 101
MspR9I CCNGG 4 cut(s) 117, 226, 965, 1164
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 4 cut(s) 117, 226, 965, 1164
MvnI CGCG 1 cut(s) 586
MwoI GCNNNNNNNGC 7 cut(s) 71, 85, 218, 221, 230, 487, 1202
NdeII GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
NlaIII CATG 3 cut(s) 125, 163, 1233
NlaIV GGNNCC 3 cut(s) 519, 868, 921
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 522
PceI AGGCCT 1 cut(s) 670
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 243, 1045, 1223
PkrI GCNGC 8 cut(s) 87, 181, 214, 223, 321, 854, 1060, 1198
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 4 cut(s) 115, 224, 963, 1162
PspFI CCCAGC 2 cut(s) 74, 1021
PspGI CCWGG 4 cut(s) 115, 224, 963, 1162
PspN4I GGNNCC 3 cut(s) 519, 868, 921
PspPI GGNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 522
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 6 cut(s) 468, 763, 983, 1150, 1168, 1180
RsaNI GTAC 6 cut(s) 467, 762, 982, 1149, 1167, 1179
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 3 cut(s) 168, 506, 915
SatI GCNGC 8 cut(s) 86, 180, 213, 222, 320, 853, 1059, 1197
Sau3AI GATC 7 cut(s) 107, 283, 367, 499, 701, 780, 1037
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 1180
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 4 cut(s) 117, 226, 965, 1164
SduI GDGCHC 1 cut(s) 409
SfaNI GCATC 1 cut(s) 780
SfcI CTRYAG 2 cut(s) 476, 1068
Sfr274I CTCGAG 1 cut(s) 522
SlaI CTCGAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 378, 522, 987
SmoI CTYRAG 3 cut(s) 378, 522, 987
SpeI ACTAGT 3 cut(s) 929, 1169, 1181
Sse9I AATT 7 cut(s) 163, 216, 535, 637, 652, 832, 890
SseBI AGGCCT 1 cut(s) 670
SsiI CCGC 2 cut(s) 578, 584
SspMI CTAG 7 cut(s) 464, 822, 828, 930, 1170, 1176, 1182
StuI AGGCCT 1 cut(s) 670
StyD4I CCNGG 4 cut(s) 115, 224, 963, 1162
TaaI ACNGT 4 cut(s) 341, 351, 397, 1007
TaqI TCGA 1 cut(s) 523
TasI AATT 7 cut(s) 163, 216, 535, 637, 652, 832, 890
TatI WGTACW 3 cut(s) 466, 981, 1178
TfiI GAWTC 3 cut(s) 243, 1045, 1223
Tru1I TTAA 3 cut(s) 168, 506, 915
Tru9I TTAA 3 cut(s) 168, 506, 915
TscAI CASTG 3 cut(s) 255, 877, 1080
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 8 cut(s) 85, 179, 212, 221, 319, 852, 1058, 1196
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 5 cut(s) 35, 42, 176, 1019, 1148
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 3 cut(s) 255, 877, 1080
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 7 cut(s) 464, 822, 828, 930, 1170, 1176, 1182
ZrmI AGTACT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.