Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Reverse (-)

10210417 .. 10213093

Gene Structure 2677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGATCTGCAAGTGGGTTTTACTCGAACGAAGAGTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGGTCCTAAGATCGGTGAAGGTGCTCATGCCAAAGTTTATGAGGGAAAGTATAGAAACCAAACAGTGGCGATTAAGATTATTAAAAGAGGAGAGTCCCCTGAAGAGATTGCTAAACGAGATAACCGGTTTGCGAGAGAGATTGCTATGTTGTCTAAAGTCCAGCACAAGAATTTAGTCAAGTTCATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACTGAGCTTCTACTAGGCGGTACATTGCGTAAATATCTAGTCAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGGTTTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCGCGATCTTAAACCAGAGAATTTGATCTTATCAGCGGATCATAAGACAGTGAAACTCGCTGATTTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATACCGATGGATGGCCCCCGAGCTCTACAGTACGGTTACGTTAAGGCAAGGAGAGAAGAAACACTATAATCATAAAGTAGATGCTTACAGCTTTGCCATTGTCTTGTGGGAACTTATTCTCAACAAGTTACCATTTGAAGGCATGTCAAATCTACAAGCAGCATATGCTGCTGCATTCAAGAACTTGAGGCCAAGTGCAGAGGATTTACCAGGAGACTTAGAGATGATTGTAACTTCATGCTGGAAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATTCAAATGCTCCTCCGTTACCTCACCACTGTTTCGGCACCACAGATCATTCCTCCACCGAATCGACGAGTCTTCTCATCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACTTGCTCTCTGATGTCTGTCAGAGACGGAGACGTTTCTCGTCAGACCGTTAACACTGCTGATTCATCGGAGAAACAAACAAAAGGAAGCTTCTTCTCCTGCTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko04932 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map04932 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

356

Amino Acids

40.1

Weight (kDa)

8.12

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	30 - 286	6.3e-57	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	30 - 285	1.4e-52	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	883
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccII	CGCG	1 cut(s)	447
AciI	CCGC	4 cut(s)	321, 445, 479, 549
AclWI	GGATC	6 cut(s)	13, 41, 54, 59, 489, 809
AcoI	YGGCCR	2 cut(s)	353, 827
AcsI	RAATTY	3 cut(s)	253, 463, 832
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	325, 562, 595
AfiI	CCNNNNNNNGG	4 cut(s)	95, 148, 574, 701
AgeI	ACCGGT	1 cut(s)	207
AgsI	TTSAA	4 cut(s)	41, 701, 742, 851
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	6 cut(s)	310, 348, 518, 586, 654, 1050
AluI	AGCT	6 cut(s)	310, 348, 518, 586, 654, 1050
Alw21I	GWGCWC	2 cut(s)	109, 588
Alw26I	GTCTC	4 cut(s)	548, 771, 978, 984
AlwI	GGATC	6 cut(s)	13, 41, 54, 59, 489, 809
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	353, 576, 752, 827
ApeKI	GCWGC	4 cut(s)	722, 731, 734, 1062
ApoI	RAATTY	3 cut(s)	253, 463, 832
AsiGI	ACCGGT	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	86, 577
AsuC2I	CCSGG	1 cut(s)	957
AsuHPI	GGTGA	4 cut(s)	110, 434, 862, 936
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	883
BanII	GRGCYC	1 cut(s)	588
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	910
Bbv12I	GWGCWC	2 cut(s)	109, 588
BbvI	GCAGC	4 cut(s)	718, 721, 734, 1049
BccI	CCATC	3 cut(s)	286, 564, 568
BceAI	ACGGC	2 cut(s)	368, 842
BciT130I	CCWGG	1 cut(s)	774
BcnI	CCSGG	1 cut(s)	957
BcoDI	GTCTC	4 cut(s)	548, 771, 978, 984
BfaI	CTAG	3 cut(s)	317, 341, 519
BfmI	CTRYAG	1 cut(s)	589
BisI	GCNGC	4 cut(s)	723, 732, 735, 1063
BlsI	GCNGC	4 cut(s)	724, 733, 736, 1064
Bme1390I	CCNGG	2 cut(s)	774, 957
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	86, 577
BmiI	GGNNCC	3 cut(s)	48, 579, 885
BmrFI	CCNGG	2 cut(s)	774, 957
BmsI	GCATC	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	910
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	1 cut(s)	957
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	2 cut(s)	207, 946
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 148, 574, 701
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	3 cut(s)	326, 399, 417
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	4 cut(s)	95, 148, 574, 701
BseMI	GCAATG	3 cut(s)	326, 399, 417
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	2 cut(s)	186, 848
BseXI	GCAGC	4 cut(s)	718, 721, 734, 1049
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	4 cut(s)	355, 578, 754, 829
BshNI	GGYRCC	1 cut(s)	883
BshTI	ACCGGT	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	109, 588
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	3 cut(s)	208, 947, 957
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	4 cut(s)	95, 148, 574, 701
BsmAI	GTCTC	4 cut(s)	548, 771, 978, 984
BsmBI	CGTCTC	2 cut(s)	978, 984
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	4 cut(s)	355, 578, 754, 829
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	109, 588
Bsp143I	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
BspACI	CCGC	4 cut(s)	321, 445, 479, 549
BspANI	GGCC	4 cut(s)	355, 578, 754, 829
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	3 cut(s)	48, 579, 885
BspPI	GGATC	6 cut(s)	13, 41, 54, 59, 489, 809
BspT107I	GGYRCC	1 cut(s)	883
BsrDI	GCAATG	3 cut(s)	326, 399, 417
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	7 cut(s)	148, 434, 493, 593, 598, 877, 1009
Bst6I	CTCTTC	2 cut(s)	27, 180
BstAPI	GCANNNNNTGC	2 cut(s)	728, 731
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	90, 306, 781
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	9 cut(s)	8, 49, 67, 96, 451, 471, 484, 817, 894
BstMAI	GTCTC	4 cut(s)	548, 771, 978, 984
BstMBI	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	728, 731
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	2 cut(s)	772, 955
BstSFI	CTRYAG	1 cut(s)	589
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	718, 721, 734, 1049
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	3 cut(s)	5, 46, 814
BstYI	RGATCY	3 cut(s)	5, 46, 814
BsuRI	GGCC	4 cut(s)	355, 578, 754, 829
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	1014
BtsIMutI	CAGTG	4 cut(s)	153, 498, 873, 1014
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	86, 577
Csp6I	GTAC	3 cut(s)	324, 561, 594
CspAI	ACCGGT	1 cut(s)	207
CviAII	CATG	4 cut(s)	110, 289, 706, 801
CviQI	GTAC	3 cut(s)	324, 561, 594
DdeI	CTNAG	3 cut(s)	90, 306, 781
DpnI	GATC	9 cut(s)	7, 48, 66, 95, 450, 470, 483, 816, 893
DpnII	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
EaeI	YGGCCR	2 cut(s)	353, 827
Eam1104I	CTCTTC	2 cut(s)	27, 180
EarI	CTCTTC	2 cut(s)	27, 180
Ecl136II	GAGCTC	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	588
Esp3I	CGTCTC	2 cut(s)	978, 984
FaeI	CATG	4 cut(s)	113, 292, 709, 804
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	4 cut(s)	109, 288, 705, 800
FauNDI	CATATG	1 cut(s)	727
Fnu4HI	GCNGC	4 cut(s)	723, 732, 735, 1063
FokI	GGATG	1 cut(s)	586
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	4 cut(s)	723, 732, 735, 1063
FspBI	CTAG	3 cut(s)	317, 341, 519
GluI	GCNGC	4 cut(s)	723, 732, 735, 1063
HaeIII	GGCC	4 cut(s)	355, 578, 754, 829
HapII	CCGG	3 cut(s)	208, 947, 957
Hin1II	CATG	4 cut(s)	113, 292, 709, 804
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HindIII	AAGCTT	1 cut(s)	1048
HinfI	GANTC	6 cut(s)	176, 527, 907, 915, 950, 1022
HpaI	GTTAAC	1 cut(s)	1012
HpaII	CCGG	3 cut(s)	208, 947, 957
HphI	GGTGA	4 cut(s)	110, 434, 862, 936
Hpy166II	GTNNAC	2 cut(s)	422, 1012
Hpy188I	TCNGA	5 cut(s)	928, 972, 983, 1005, 1030
Hpy188III	TCNNGA	2 cut(s)	395, 742
Hpy8I	GTNNAC	2 cut(s)	422, 1012
Hpy99I	CGWCG	1 cut(s)	915
HpyAV	CCTTC	2 cut(s)	95, 695
HpyCH4III	ACNGT	7 cut(s)	148, 434, 493, 593, 598, 877, 1009
HpyCH4IV	ACGT	2 cut(s)	602, 993
HpyCH4V	TGCA	5 cut(s)	11, 279, 410, 737, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	728, 731
HpyF3I	CTNAG	3 cut(s)	90, 306, 781
HpySE526I	ACGT	2 cut(s)	602, 993
Hsp92II	CATG	4 cut(s)	113, 292, 709, 804
KspAI	GTTAAC	1 cut(s)	1012
Kzo9I	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
LmnI	GCTCC	2 cut(s)	272, 861
Lsp1109I	GCAGC	4 cut(s)	718, 721, 734, 1049
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	3 cut(s)	317, 341, 519
MaeII	ACGT	2 cut(s)	602, 993
MaeIII	GTNAC	5 cut(s)	301, 598, 690, 793, 863
MalI	GATC	9 cut(s)	7, 48, 66, 95, 450, 470, 483, 816, 893
MboI	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
MboII	GAAGA	7 cut(s)	44, 197, 536, 631, 824, 910, 1045
MflI	RGATCY	3 cut(s)	5, 46, 814
MhlI	GDGCHC	2 cut(s)	109, 588
MluCI	AATT	5 cut(s)	41, 253, 463, 832, 846
MlyI	GAGTC	2 cut(s)	185, 924
MnlI	CCTC	8 cut(s)	78, 118, 164, 744, 757, 869, 878, 909
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	6 cut(s)	156, 165, 453, 533, 605, 1011
MslI	CAYNNNNRTG	1 cut(s)	568
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	3 cut(s)	208, 947, 957
MspR9I	CCNGG	2 cut(s)	774, 957
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	728, 731
NciI	CCSGG	1 cut(s)	957
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
NlaIII	CATG	4 cut(s)	113, 292, 709, 804
NlaIV	GGNNCC	3 cut(s)	48, 579, 885
NspI	RCATGY	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PctI	GAATGC	1 cut(s)	737
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	4 cut(s)	527, 907, 950, 1022
PflMI	CCANNNNNTGG	1 cut(s)	148
PfoI	TCCNGGA	1 cut(s)	955
PinAI	ACCGGT	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	724, 733, 736, 1064
PleI	GAGTC	2 cut(s)	184, 923
PpsI	GAGTC	2 cut(s)	184, 923
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	3 cut(s)	48, 579, 885
PspPI	GGNCC	2 cut(s)	86, 577
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	3 cut(s)	5, 46, 814
RsaI	GTAC	3 cut(s)	325, 562, 595
RsaNI	GTAC	3 cut(s)	324, 561, 594
RseI	CAYNNNNRTG	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	6 cut(s)	156, 165, 453, 533, 605, 1011
SatI	GCNGC	4 cut(s)	723, 732, 735, 1063
Sau3AI	GATC	9 cut(s)	5, 46, 64, 93, 448, 468, 481, 814, 891
Sau96I	GGNCC	2 cut(s)	86, 577
SchI	GAGTC	2 cut(s)	185, 924
ScrFI	CCNGG	2 cut(s)	774, 957
SduI	GDGCHC	2 cut(s)	109, 588
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	5 cut(s)	41, 253, 463, 832, 846
SsiI	CCGC	4 cut(s)	321, 445, 479, 549
SspMI	CTAG	3 cut(s)	317, 341, 519
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	772, 955
TaaI	ACNGT	7 cut(s)	148, 434, 493, 593, 598, 877, 1009
TaiI	ACGT	2 cut(s)	605, 996
TaqI	TCGA	2 cut(s)	26, 910
TasI	AATT	5 cut(s)	41, 253, 463, 832, 846
TfiI	GAWTC	4 cut(s)	527, 907, 950, 1022
Tru1I	TTAA	6 cut(s)	156, 165, 453, 533, 605, 1011
Tru9I	TTAA	6 cut(s)	156, 165, 453, 533, 605, 1011
TscAI	CASTG	4 cut(s)	153, 498, 880, 1021
TseI	GCWGC	4 cut(s)	722, 731, 734, 1062
TspDTI	ATGAA	3 cut(s)	256, 789, 1014
TspGWI	ACGGA	2 cut(s)	851, 1002
TspRI	CASTG	4 cut(s)	153, 498, 880, 1021
Van91I	CCANNNNNTGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	3 cut(s)	253, 463, 832
XceI	RCATGY	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	3 cut(s)	317, 341, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.