Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Forward (+)

87377603 .. 87378936

Gene Structure 1334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG657000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTCATAGTGACTGAGCTTCTTCTTGGGGGGACTTTGCGCAAATACTTGTTCAGTATGCGGCCAAGGTGCTTGGACATGCCTGTGGCAGTTGGGTTTGCACTTGATATTGCTCGTGCTATGGAATGCTTACACTCTCATGGAATCATTCACCGGGACCTGAAACCTGAGAACTTGATTTTGACTGCAGACCATAAAACAGTTAAACTTGCGGATTTTGGCTTAGCAAGAGAAGAGTCATTAACAGAAATGATGACTGCAGAAACTGGGACATACCGGTGGATGGCTCCTGAGCTTTATAGCACAGTTACATTAAGACATGGAGAGAAGAAGCATTACAATCATAAGGTGGATGCTTATAGCTTTGCAATTGTATTGTGGGAACTCATTCATAATAAGCTGCCCTTTGAAGGCATGTCAAATTTGCAAGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCAAGTGCTGAAGACCTGCCAGAGGATTTGGCTTTGATAGTAACCTCATGTTGGAAAGAGGATCCAAATGATCGGCCCAACTTTAGCCAAATTATACAGATGCTTATGCATTATCTCTCTACTATTTCACCATCAAAACCCGCAATCCCCCAACGGATATTCAGATCTGATAATGCTGTACTGCCTCCTGAGTCTCCCGGTACTAGTTCTTTGATGGCTACACACAATGAATCGGGCGAAACCCCTAAAACAGACGTGGAAGAGAAGCCCAAAGGTTTTTTCTTCTGCTTTAACATGTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

255

Amino Acids

28.79

Weight (kDa)

6.06

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 188	9.7e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 189	4.6e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	486
AciI	CCGC	3 cut(s)	61, 212, 603
AclWI	GGATC	2 cut(s)	518, 531
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	642, 664
AfiI	CCNNNNNNNGG	4 cut(s)	283, 410, 484, 513
AflIII	ACRYGT	1 cut(s)	756
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	410
AhlI	ACTAGT	1 cut(s)	665
AjiI	CACGTC	1 cut(s)	718
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	5 cut(s)	19, 295, 363, 400, 443
AluI	AGCT	5 cut(s)	19, 295, 363, 400, 443
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	518, 531
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	62, 461, 536
ApeKI	GCWGC	4 cut(s)	400, 431, 440, 443
ApoI	RAATTY	1 cut(s)	421
AsiGI	ACCGGT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	157, 537
AsuC2I	CCSGG	2 cut(s)	155, 660
AsuHPI	GGTGA	2 cut(s)	143, 582
AvaII	GGWCC	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BauI	CACGAG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	387, 430, 443, 452
BccI	CCATC	3 cut(s)	277, 601, 670
BcnI	CCSGG	2 cut(s)	155, 660
BcoDI	GTCTC	1 cut(s)	660
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	2 cut(s)	186, 258
BfuAI	ACCTGC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	626
BisI	GCNGC	5 cut(s)	62, 401, 432, 441, 444
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	5 cut(s)	63, 402, 433, 442, 445
Bme1390I	CCNGG	2 cut(s)	155, 660
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	718
BmgT120I	GGNCC	2 cut(s)	157, 537
BmiI	GGNNCC	3 cut(s)	158, 288, 525
BmrFI	CCNGG	2 cut(s)	155, 660
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	343, 552
BmuI	ACTGGG	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	223
BpuMI	CCSGG	2 cut(s)	155, 660
BsaJI	CCNNGG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 410, 484, 513
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	288, 358
BseLI	CCNNNNNNNGG	4 cut(s)	283, 410, 484, 513
BseMII	CTCAG	4 cut(s)	6, 159, 282, 642
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	4 cut(s)	387, 430, 443, 452
BshFI	GGCC	3 cut(s)	64, 463, 538
BshTI	ACCGGT	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	154, 277, 660
BslFI	GGGAC	3 cut(s)	46, 170, 283
BslI	CCNNNNNNNGG	4 cut(s)	283, 410, 484, 513
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	3 cut(s)	46, 170, 283
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	64, 463, 538
Bsp143I	GATC	3 cut(s)	523, 532, 626
Bsp1720I	GCTNAGC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	61, 212, 603
BspANI	GGCC	3 cut(s)	64, 463, 538
BspCNI	CTCAG	4 cut(s)	7, 160, 283, 643
BspLI	GGNNCC	3 cut(s)	158, 288, 525
BspMAI	CTGCAG	2 cut(s)	190, 262
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	518, 531
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	3 cut(s)	523, 532, 626
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	202, 307
Bst6I	CTCTTC	2 cut(s)	228, 717
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	5 cut(s)	15, 168, 223, 291, 651
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	2 cut(s)	288, 358
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	526, 535, 629
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	3 cut(s)	523, 532, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 440
BstNSI	RCATGY	3 cut(s)	82, 418, 760
BstSCI	CCNGG	2 cut(s)	153, 658
BstSFI	CTRYAG	2 cut(s)	186, 258
BstV1I	GCAGC	4 cut(s)	387, 430, 443, 452
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	2 cut(s)	523, 626
BstYI	RGATCY	2 cut(s)	523, 626
BsuRI	GGCC	3 cut(s)	64, 463, 538
BtrI	CACGTC	1 cut(s)	718
BtsCI	GGATG	2 cut(s)	288, 358
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	157, 537
Csp6I	GTAC	2 cut(s)	641, 663
CspAI	ACCGGT	1 cut(s)	276
CviAII	CATG	6 cut(s)	79, 140, 320, 415, 510, 757
CviQI	GTAC	2 cut(s)	641, 663
DdeI	CTNAG	5 cut(s)	15, 168, 223, 291, 651
DpnI	GATC	3 cut(s)	525, 534, 628
DpnII	GATC	3 cut(s)	523, 532, 626
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	2 cut(s)	228, 717
EarI	CTCTTC	2 cut(s)	228, 717
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	6 cut(s)	82, 143, 323, 418, 513, 760
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	3 cut(s)	46, 170, 283
FatI	CATG	6 cut(s)	78, 139, 319, 414, 509, 756
FauI	CCCGC	1 cut(s)	610
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	5 cut(s)	62, 401, 432, 441, 444
FokI	GGATG	2 cut(s)	295, 365
Fsp4HI	GCNGC	5 cut(s)	62, 401, 432, 441, 444
FspBI	CTAG	1 cut(s)	666
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	5 cut(s)	62, 401, 432, 441, 444
HaeIII	GGCC	3 cut(s)	64, 463, 538
HapII	CCGG	3 cut(s)	154, 277, 660
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	6 cut(s)	82, 143, 323, 418, 513, 760
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	144, 236, 653, 692
HpaII	CCGG	3 cut(s)	154, 277, 660
HphI	GGTGA	2 cut(s)	143, 582
Hpy188I	TCNGA	2 cut(s)	626, 631
Hpy188III	TCNNGA	2 cut(s)	290, 650
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	202, 307
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	7 cut(s)	101, 188, 260, 368, 427, 440, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 440
HpyF3I	CTNAG	5 cut(s)	15, 168, 223, 291, 651
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	6 cut(s)	82, 143, 323, 418, 513, 760
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	523, 532, 626
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	4 cut(s)	387, 430, 443, 452
LweI	GCATC	2 cut(s)	343, 552
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	3 cut(s)	10, 307, 502
MalI	GATC	3 cut(s)	525, 534, 628
MboI	GATC	3 cut(s)	523, 532, 626
MboII	GAAGA	6 cut(s)	14, 245, 340, 485, 734, 736
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	2 cut(s)	523, 626
MluCI	AATT	3 cut(s)	369, 421, 552
MlyI	GAGTC	2 cut(s)	245, 662
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	5 cut(s)	453, 478, 514, 517, 657
Mph1103I	ATGCAT	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	5 cut(s)	204, 242, 314, 450, 753
MslI	CAYNNNNRTG	3 cut(s)	83, 138, 277
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	3 cut(s)	154, 277, 660
MspR9I	CCNGG	2 cut(s)	155, 660
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	437, 440
NciI	CCSGG	2 cut(s)	155, 660
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	3 cut(s)	523, 532, 626
NlaIII	CATG	6 cut(s)	82, 143, 323, 418, 513, 760
NlaIV	GGNNCC	3 cut(s)	158, 288, 525
NmuCI	GTSAC	1 cut(s)	10
NsbI	TGCGCA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	3 cut(s)	82, 418, 760
PciI	ACATGT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	144, 692
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	63, 402, 433, 442, 445
PleI	GAGTC	2 cut(s)	244, 661
PpsI	GAGTC	2 cut(s)	244, 661
PpuMI	RGGWCCY	1 cut(s)	157
PscI	ACATGT	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	158, 288, 525
PspPI	GGNCC	2 cut(s)	157, 537
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	2 cut(s)	190, 262
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	523, 626
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	642, 664
RsaNI	GTAC	2 cut(s)	641, 663
RseI	CAYNNNNRTG	3 cut(s)	83, 138, 277
SaqAI	TTAA	5 cut(s)	204, 242, 314, 450, 753
SatI	GCNGC	5 cut(s)	62, 401, 432, 441, 444
Sau3AI	GATC	3 cut(s)	523, 532, 626
Sau96I	GGNCC	2 cut(s)	157, 537
SchI	GAGTC	2 cut(s)	245, 662
ScrFI	CCNGG	2 cut(s)	155, 660
SfaNI	GCATC	2 cut(s)	343, 552
SfcI	CTRYAG	2 cut(s)	186, 258
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	3 cut(s)	83, 138, 277
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	3 cut(s)	369, 421, 552
SsiI	CCGC	3 cut(s)	61, 212, 603
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	153, 658
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	202, 307
TaiI	ACGT	1 cut(s)	720
TasI	AATT	3 cut(s)	369, 421, 552
TatI	WGTACW	1 cut(s)	640
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	144, 692
Tru1I	TTAA	5 cut(s)	204, 242, 314, 450, 753
Tru9I	TTAA	5 cut(s)	204, 242, 314, 450, 753
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	400, 431, 440, 443
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	380, 705
TspGWI	ACGGA	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	3 cut(s)	82, 418, 760
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	1 cut(s)	666
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.