Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Reverse (-)

1700741 .. 1703583

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1023300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGATCTGGAAATGGGGTTTATTCAGTTGGGGATTTCGATTTGGATGCCAAGTGGCTGATCGATCCAAAGCAACTTTTTGTTGGTCCGAGGATTGGGGAAGGCGCGCATGCCAAAGTGTACGAGGGAAAATATAAGAATCAAAATGTTGCTGTAAAAATTGTTCCTAGAGGGGAAACTCCAGAGGAGATTGCCAAGAGAGAAGCCCGGTTTGCGAGGGAAGTGGCAATGATGTCGAAAGTGCGGCACAAGAACTTAGTGAAGTTCATTGGTGCCTGCAAAGAACCTGTAATGGTCATAGTGACCGAGCTTCTTCTAGGCGGGACTTTGCGCAAATACTTGTTCAGCATGCGGCCAAGGTGCTTGGACACGCATGTGGCAGTTGGGTTTGCGCTTGATATTGCTCGTGCTATGGAATGCTTACACTCCCATGGAATCATTCACCGGGACCTGAAACCTGAGAATTTGATCTTGACCGCAGACCATAAAACTGTCAAACTTGCGGATTTTGGCTTAGCAAGGGAAGAGTCGTTGACAGAGATGATGACCGCTGAAACTGGGACATACCGGTGGATGGCTCCTGAGCTTTACAGCACGGTTACATTACGACATGGAGAGAAGAAGCATTACAATCATAAGGTGGACGCTTACAGCTTTGCAATTGTATTGTGGGAACTCATCCATAACAAGCTGCCTTTCGAAGGCATGTCGAATTTACAAGCAGCGTATGCAGCCGCTTTTAAGAATGTTAGACCCAGTGCCGAAAGCCTACCCGAGGATTTGGCTCTGATCGTAACTTCATGTTGGAAAGAGGATCCCAATGACCGGCCCAACTTCACCCAAATTATACAGATGCTGCTGCATTACCTCTCTACTATTTCGGTGCCAGCACCCGCTATCCCCCAACGGATGTTCAAATCTGAGAACGCTGTACTCCCACCAGAGTCACCCGGTACTAGTTCCTTGATGGCTACACACAACTCCGGTGAAACCGCTAAAACCAACACGGACATGGAAGATAAAACTAAAGGTTTTTTCTCCTGCTTTAGACAGTGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

354

Amino Acids

39.6

Weight (kDa)

8.12

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 285	1.4e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 286	4.2e-57	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	272, 883
AccII	CGCG	1 cut(s)	107
AciI	CCGC	9 cut(s)	244, 321, 352, 477, 503, 549, 735, 894, 993
AclWI	GGATC	4 cut(s)	13, 59, 809, 822
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	463, 712
AfaI	GTAC	3 cut(s)	122, 933, 955
AfiI	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	1 cut(s)	916
AhlI	ACTAGT	1 cut(s)	956
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	310, 586, 654, 691
AluI	AGCT	4 cut(s)	310, 586, 654, 691
AlwI	GGATC	4 cut(s)	13, 59, 809, 822
AlwNI	CAGNNNCTG	1 cut(s)	856
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	353, 827
ApeKI	GCWGC	5 cut(s)	691, 722, 731, 856, 859
ApoI	RAATTY	2 cut(s)	463, 712
AsiGI	ACCGGT	1 cut(s)	567
AspLEI	GCGC	4 cut(s)	107, 109, 333, 394
AspS9I	GGNCC	3 cut(s)	86, 448, 828
AsuC2I	CCSGG	3 cut(s)	208, 446, 951
AsuHPI	GGTGA	4 cut(s)	434, 829, 939, 998
AsuII	TTCGAA	1 cut(s)	699
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	86, 448
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	2 cut(s)	272, 883
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	5 cut(s)	678, 734, 743, 843, 846
BccI	CCATC	2 cut(s)	568, 961
BcgI	CGANNNNNNTGC	4 cut(s)	29, 63, 216, 250
BcnI	CCSGG	3 cut(s)	208, 446, 951
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	3 cut(s)	168, 317, 957
BisI	GCNGC	8 cut(s)	245, 353, 692, 723, 732, 735, 857, 860
BlpI	GCTNAGC	1 cut(s)	514
BlsI	GCNGC	8 cut(s)	246, 354, 693, 724, 733, 736, 858, 861
Bme1390I	CCNGG	3 cut(s)	208, 446, 951
Bme18I	GGWCC	2 cut(s)	86, 448
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	3 cut(s)	86, 448, 828
BmiI	GGNNCC	5 cut(s)	274, 449, 579, 816, 885
BmrFI	CCNGG	3 cut(s)	208, 446, 951
BmrI	ACTGGG	2 cut(s)	567, 750
BmsI	GCATC	2 cut(s)	37, 843
BmuI	ACTGGG	2 cut(s)	567, 750
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	699
BpuMI	CCSGG	3 cut(s)	208, 446, 951
Bsa29I	ATCGAT	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	89, 356, 430, 774
BsaWI	WCCGGW	2 cut(s)	567, 983
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
Bse118I	RCCGGY	2 cut(s)	567, 825
Bse1I	ACTGG	2 cut(s)	562, 756
Bse3DI	GCAATG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	89, 356, 430, 774
BseGI	GGATG	4 cut(s)	52, 579, 678, 915
BseLI	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	450, 573, 912
BseNI	ACTGG	2 cut(s)	562, 756
BsePI	GCGCGC	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	5 cut(s)	678, 734, 743, 843, 846
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	355, 829
BshNI	GGYRCC	2 cut(s)	272, 883
BshTI	ACCGGT	1 cut(s)	567
BshVI	ATCGAT	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	6 cut(s)	208, 445, 568, 826, 951, 984
BslFI	GGGAC	3 cut(s)	337, 461, 574
BslI	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
BsmFI	GGGAC	3 cut(s)	337, 461, 574
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	355, 829
BsoBI	CYCGRG	1 cut(s)	773
Bsp119I	TTCGAA	1 cut(s)	699
Bsp143I	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
Bsp1720I	GCTNAGC	1 cut(s)	514
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	9 cut(s)	244, 321, 352, 477, 503, 549, 735, 894, 993
BspANI	GGCC	2 cut(s)	355, 829
BspCNI	CTCAG	3 cut(s)	451, 574, 913
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	5 cut(s)	274, 449, 579, 816, 885
BspPI	GGATC	4 cut(s)	13, 59, 809, 822
BspT104I	TTCGAA	1 cut(s)	699
BspT107I	GGYRCC	2 cut(s)	272, 883
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	567, 825
BsrI	ACTGG	2 cut(s)	562, 756
BssAI	RCCGGY	2 cut(s)	567, 825
BssECI	CCNNGG	4 cut(s)	89, 356, 430, 774
BssHII	GCGCGC	1 cut(s)	105
BssMI	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	356, 430
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	493, 598, 1053
Bst6I	CTCTTC	1 cut(s)	519
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	5 cut(s)	107, 111, 277, 350, 888
BstDEI	CTNAG	5 cut(s)	256, 459, 514, 582, 921
BstDSI	CCRYGG	1 cut(s)	430
BstENI	CCTNNNNNAGG	2 cut(s)	699, 773
BstF5I	GGATG	4 cut(s)	52, 579, 678, 915
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	4 cut(s)	107, 109, 333, 394
BstKTI	GATC	6 cut(s)	8, 63, 67, 471, 792, 817
BstMBI	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 728, 731
BstNSI	RCATGY	4 cut(s)	113, 352, 377, 709
BstSCI	CCNGG	3 cut(s)	206, 444, 949
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	5 cut(s)	678, 734, 743, 843, 846
BstX2I	RGATCY	2 cut(s)	5, 814
BstYI	RGATCY	2 cut(s)	5, 814
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	355, 829
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	4 cut(s)	52, 579, 678, 915
BtsIMutI	CAGTG	2 cut(s)	763, 1058
Cac8I	GCNNGC	5 cut(s)	107, 111, 277, 350, 888
CaiI	CAGNNNCTG	1 cut(s)	856
CfoI	GCGC	4 cut(s)	107, 109, 333, 394
Cfr10I	RCCGGY	2 cut(s)	567, 825
Cfr13I	GGNCC	3 cut(s)	86, 448, 828
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	3 cut(s)	121, 932, 954
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	8 cut(s)	110, 349, 374, 431, 611, 706, 801, 1012
CviQI	GTAC	3 cut(s)	121, 932, 954
DdeI	CTNAG	5 cut(s)	256, 459, 514, 582, 921
DpnI	GATC	6 cut(s)	7, 62, 66, 470, 791, 816
DpnII	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	356, 430
Eco47I	GGWCC	2 cut(s)	86, 448
Eco88I	CYCGRG	1 cut(s)	773
EcoNI	CCTNNNNNAGG	2 cut(s)	699, 773
EcoO109I	RGGNCCY	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	356, 430
ErhI	CCWWGG	2 cut(s)	356, 430
FaeI	CATG	8 cut(s)	113, 352, 377, 434, 614, 709, 804, 1015
FaqI	GGGAC	3 cut(s)	337, 461, 574
FatI	CATG	8 cut(s)	109, 348, 373, 430, 610, 705, 800, 1011
FauI	CCCGC	2 cut(s)	314, 901
Fnu4HI	GCNGC	8 cut(s)	245, 353, 692, 723, 732, 735, 857, 860
FokI	GGATG	4 cut(s)	59, 586, 665, 922
Fsp4HI	GCNGC	8 cut(s)	245, 353, 692, 723, 732, 735, 857, 860
FspBI	CTAG	3 cut(s)	168, 317, 957
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	4 cut(s)	106, 108, 332, 393
GluI	GCNGC	8 cut(s)	245, 353, 692, 723, 732, 735, 857, 860
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	355, 829
HapII	CCGG	6 cut(s)	208, 445, 568, 826, 951, 984
HgaI	GACGC	1 cut(s)	653
HhaI	GCGC	4 cut(s)	107, 109, 333, 394
Hin1II	CATG	8 cut(s)	113, 352, 377, 434, 614, 709, 804, 1015
Hin6I	GCGC	4 cut(s)	105, 107, 331, 392
HinP1I	GCGC	4 cut(s)	105, 107, 331, 392
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	4 cut(s)	139, 435, 527, 944
HpaII	CCGG	6 cut(s)	208, 445, 568, 826, 951, 984
HphI	GGTGA	4 cut(s)	434, 829, 939, 998
Hpy166II	GTNNAC	3 cut(s)	121, 534, 643
Hpy188I	TCNGA	3 cut(s)	90, 789, 922
Hpy188III	TCNNGA	4 cut(s)	9, 182, 472, 581
Hpy8I	GTNNAC	3 cut(s)	121, 534, 643
HpyAV	CCTTC	2 cut(s)	95, 695
HpyCH4III	ACNGT	3 cut(s)	493, 598, 1053
HpyCH4V	TGCA	4 cut(s)	279, 659, 731, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 728, 731
HpyF3I	CTNAG	5 cut(s)	256, 459, 514, 582, 921
Hsp92II	CATG	8 cut(s)	113, 352, 377, 434, 614, 709, 804, 1015
HspAI	GCGC	4 cut(s)	105, 107, 331, 392
Kzo9I	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	5 cut(s)	678, 734, 743, 843, 846
LweI	GCATC	2 cut(s)	37, 843
MaeI	CTAG	3 cut(s)	168, 317, 957
MaeIII	GTNAC	4 cut(s)	301, 598, 793, 945
MalI	GATC	6 cut(s)	7, 62, 66, 470, 791, 816
MboI	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
MboII	GAAGA	4 cut(s)	305, 536, 631, 1028
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	2 cut(s)	5, 814
MluCI	AATT	5 cut(s)	159, 463, 660, 712, 843
MlyI	GAGTC	2 cut(s)	536, 953
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	8 cut(s)	84, 118, 164, 178, 210, 769, 805, 878
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	4 cut(s)	374, 429, 568, 1010
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	6 cut(s)	208, 445, 568, 826, 951, 984
MspR9I	CCNGG	3 cut(s)	208, 446, 951
MunI	CAATTG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	422
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	212, 728, 731
NciI	CCSGG	3 cut(s)	208, 446, 951
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
NlaIII	CATG	8 cut(s)	113, 352, 377, 434, 614, 709, 804, 1015
NlaIV	GGNNCC	5 cut(s)	274, 449, 579, 816, 885
NmuCI	GTSAC	2 cut(s)	301, 945
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	4 cut(s)	113, 352, 377, 709
NspV	TTCGAA	1 cut(s)	699
OliI	CACNNNNGTG	1 cut(s)	374
PaeI	GCATGC	2 cut(s)	113, 352
PauI	GCGCGC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	139, 435
PinAI	ACCGGT	1 cut(s)	567
PkrI	GCNGC	8 cut(s)	246, 354, 693, 724, 733, 736, 858, 861
PleI	GAGTC	2 cut(s)	535, 952
PpsI	GAGTC	2 cut(s)	535, 952
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
PspN4I	GGNNCC	5 cut(s)	274, 449, 579, 816, 885
PspPI	GGNCC	3 cut(s)	86, 448, 828
PspPPI	RGGWCCY	1 cut(s)	448
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstNI	CAGNNNCTG	1 cut(s)	856
PsuI	RGATCY	2 cut(s)	5, 814
PteI	GCGCGC	1 cut(s)	105
RsaI	GTAC	3 cut(s)	122, 933, 955
RsaNI	GTAC	3 cut(s)	121, 932, 954
RseI	CAYNNNNRTG	4 cut(s)	374, 429, 568, 1010
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	8 cut(s)	245, 353, 692, 723, 732, 735, 857, 860
Sau3AI	GATC	6 cut(s)	5, 60, 64, 468, 789, 814
Sau96I	GGNCC	3 cut(s)	86, 448, 828
SchI	GAGTC	2 cut(s)	536, 953
ScrFI	CCNGG	3 cut(s)	208, 446, 951
SfaNI	GCATC	2 cut(s)	37, 843
SfuI	TTCGAA	1 cut(s)	699
SinI	GGWCC	2 cut(s)	86, 448
SmiMI	CAYNNNNRTG	4 cut(s)	374, 429, 568, 1010
SpeI	ACTAGT	1 cut(s)	956
SphI	GCATGC	2 cut(s)	113, 352
Sse9I	AATT	5 cut(s)	159, 463, 660, 712, 843
SsiI	CCGC	9 cut(s)	244, 321, 352, 477, 503, 549, 735, 894, 993
SspMI	CTAG	3 cut(s)	168, 317, 957
StyD4I	CCNGG	3 cut(s)	206, 444, 949
StyI	CCWWGG	2 cut(s)	356, 430
TaaI	ACNGT	3 cut(s)	493, 598, 1053
TaqI	TCGA	5 cut(s)	39, 63, 236, 699, 710
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	5 cut(s)	159, 463, 660, 712, 843
TatI	WGTACW	1 cut(s)	931
TauI	GCSGC	3 cut(s)	247, 355, 737
TfiI	GAWTC	2 cut(s)	139, 435
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	2 cut(s)	763, 1058
TseFI	GTSAC	2 cut(s)	301, 945
TseI	GCWGC	5 cut(s)	691, 722, 731, 856, 859
Tsp45I	GTSAC	2 cut(s)	301, 945
TspDTI	ATGAA	2 cut(s)	256, 789
TspGWI	ACGGA	2 cut(s)	922, 1022
TspRI	CASTG	2 cut(s)	763, 1058
VpaK11BI	GGWCC	2 cut(s)	86, 448
XagI	CCTNNNNNAGG	2 cut(s)	699, 773
XapI	RAATTY	2 cut(s)	463, 712
XceI	RCATGY	4 cut(s)	113, 352, 377, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XspI	CTAG	3 cut(s)	168, 317, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.