Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Forward (+)

2956928 .. 2959066

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1045400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGATCTGGTAATGAGGTTTATTCAGTTGCGGATTTCAATTTGGATGCCAAGTGGCTGATCGATCCCAAACATCTTTTTGTTGGTCCGAGGATTGGGGAAGGCGCGCATGCCAAAGTGTACGAAGGAAAATATAAGAACCAAAATGTTGCTGTAAAAATTGTTCATAGAGGAGAAACCCCAGAGCAGATTGCCATGGTCATAGTGACTGAGCTTCTTCTAGGCGAACTTTGCACAAATACTTGTTCAGTATGCGGCCAAGGTGCTTGGACTCGTGCGGCGAAGCTTATTTCCGGAAACAGGGTTTGTTCCACAATCTTACACTTTTATCGTGTCCTTTTCCCAAAGAATTTGATCTTGACTGCCGACCAAAAAACAGTCAAACTTGCAGACTTTGGCTTAGCAAGAGAAGAGTCATTGACAGAGATGATGACCGCTGAAACTGGGACATACCGGTGGATGGCTCCTGAGCTTTACAGCACAGTTACATTACGGCATGGAGAAAAGAAGCATTACAATCATAAGGTGGACGCTTACAGCTTTGCAATTGTATTGTGGGAACTCATCCATAACAAGCTGCCTTTCAAAGGCATGTCGCATTTACAAGCAGCGTATGCCGCTGCTTTTAAGAATGTGAGGCCAAGTGCTGAAAGCTTCCCTGAGGATTTGGTGTTGATTGTAACTTCATGTTGGAAAGAGGATCCCAATGACCGGCCCAACTTCACCCAAATTATACAGATGCTGCTGCGTTACCTCTCTACTATTTTGGCACCAGCACCCGCTGTCCCTCAACTGATATTCAAATCTGAGAACGCTGTACTCCCACCAGAGTCGCCCGGTACTAGTTTTTTGCTGTCACTGTTGAAATTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

292

Amino Acids

32.5

Weight (kDa)

8.19

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	110 - 247	3.5e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	113 - 248	1.2e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	769
AccII	CGCG	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	6 cut(s)	32, 255, 278, 435, 618, 780
AclWI	GGATC	4 cut(s)	13, 59, 695, 708
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	349, 866
AfaI	GTAC	3 cut(s)	122, 819, 841
AfiI	CCNNNNNNNGG	5 cut(s)	95, 300, 460, 587, 711
AgeI	ACCGGT	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	40, 586, 802, 865
AhlI	ACTAGT	1 cut(s)	842
AluBI	AGCT	6 cut(s)	214, 286, 472, 540, 577, 654
AluI	AGCT	6 cut(s)	214, 286, 472, 540, 577, 654
AlwI	GGATC	4 cut(s)	13, 59, 695, 708
AlwNI	CAGNNNCTG	1 cut(s)	742
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	3 cut(s)	256, 638, 713
ApeKI	GCWGC	5 cut(s)	577, 608, 620, 742, 745
ApoI	RAATTY	2 cut(s)	349, 866
AsiGI	ACCGGT	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	107, 109
AspS9I	GGNCC	2 cut(s)	86, 714
AsuC2I	CCSGG	1 cut(s)	837
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	769
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	564, 607, 620, 729, 732
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	1 cut(s)	509
BcnI	CCSGG	1 cut(s)	837
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	2 cut(s)	221, 843
BisI	GCNGC	8 cut(s)	256, 279, 578, 609, 618, 621, 743, 746
BlpI	GCTNAGC	1 cut(s)	400
BlsI	GCNGC	8 cut(s)	257, 280, 579, 610, 619, 622, 744, 747
Bme1390I	CCNGG	1 cut(s)	837
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	86, 714
BmiI	GGNNCC	3 cut(s)	465, 702, 771
BmrFI	CCNGG	1 cut(s)	837
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	2 cut(s)	37, 729
BmuI	ACTGGG	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	837
Bsa29I	ATCGAT	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	89, 195, 259
BsaWI	WCCGGW	2 cut(s)	293, 453
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 300, 460, 587, 711
Bse118I	RCCGGY	2 cut(s)	453, 711
Bse1I	ACTGG	1 cut(s)	448
Bse21I	CCTNAGG	1 cut(s)	660
BseAI	TCCGGA	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	89, 195, 259
BseGI	GGATG	3 cut(s)	52, 465, 564
BseLI	CCNNNNNNNGG	5 cut(s)	95, 300, 460, 587, 711
BseMII	CTCAG	4 cut(s)	201, 459, 651, 798
BseNI	ACTGG	1 cut(s)	448
BsePI	GCGCGC	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	5 cut(s)	564, 607, 620, 729, 732
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	258, 640, 715
BshNI	GGYRCC	1 cut(s)	769
BshTI	ACCGGT	1 cut(s)	453
BshVI	ATCGAT	1 cut(s)	63
BsiSI	CCGG	4 cut(s)	294, 454, 712, 837
BslFI	GGGAC	2 cut(s)	460, 770
BslI	CCNNNNNNNGG	5 cut(s)	95, 300, 460, 587, 711
BsmFI	GGGAC	2 cut(s)	460, 770
BsnI	GGCC	3 cut(s)	258, 640, 715
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	5 cut(s)	5, 60, 64, 354, 700
Bsp1720I	GCTNAGC	1 cut(s)	400
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	6 cut(s)	32, 255, 278, 435, 618, 780
BspANI	GGCC	3 cut(s)	258, 640, 715
BspCNI	CTCAG	4 cut(s)	202, 460, 652, 799
BspDI	ATCGAT	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	3 cut(s)	465, 702, 771
BspPI	GGATC	4 cut(s)	13, 59, 695, 708
BspT107I	GGYRCC	1 cut(s)	769
BsrFI	RCCGGY	2 cut(s)	453, 711
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	2 cut(s)	453, 711
BssECI	CCNNGG	3 cut(s)	89, 195, 259
BssHII	GCGCGC	1 cut(s)	105
BssMI	GATC	5 cut(s)	5, 60, 64, 354, 700
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	195, 259
Bst2BI	CACGAG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	379, 484, 861
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	107, 111
BstDEI	CTNAG	5 cut(s)	210, 400, 468, 660, 807
BstDSI	CCRYGG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	3 cut(s)	52, 465, 564
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	107, 109
BstKTI	GATC	5 cut(s)	8, 63, 67, 357, 703
BstMBI	GATC	5 cut(s)	5, 60, 64, 354, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 614, 617
BstNSI	RCATGY	2 cut(s)	113, 595
BstSCI	CCNGG	1 cut(s)	835
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	5 cut(s)	564, 607, 620, 729, 732
BstX2I	RGATCY	2 cut(s)	5, 700
BstYI	RGATCY	2 cut(s)	5, 700
Bsu15I	ATCGAT	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	3 cut(s)	258, 640, 715
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	52, 465, 564
BtsIMutI	CAGTG	1 cut(s)	857
Cac8I	GCNNGC	2 cut(s)	107, 111
CaiI	CAGNNNCTG	1 cut(s)	742
CfoI	GCGC	2 cut(s)	107, 109
Cfr10I	RCCGGY	2 cut(s)	453, 711
Cfr13I	GGNCC	2 cut(s)	86, 714
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	121, 818, 840
CspAI	ACCGGT	1 cut(s)	453
CviAII	CATG	5 cut(s)	110, 196, 497, 592, 687
CviQI	GTAC	3 cut(s)	121, 818, 840
DdeI	CTNAG	5 cut(s)	210, 400, 468, 660, 807
DpnI	GATC	5 cut(s)	7, 62, 66, 356, 702
DpnII	GATC	5 cut(s)	5, 60, 64, 354, 700
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	195, 259
Eco47I	GGWCC	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoT14I	CCWWGG	2 cut(s)	195, 259
ErhI	CCWWGG	2 cut(s)	195, 259
FaeI	CATG	5 cut(s)	113, 199, 500, 595, 690
FaqI	GGGAC	2 cut(s)	460, 770
FatI	CATG	5 cut(s)	109, 195, 496, 591, 686
FauI	CCCGC	1 cut(s)	787
Fnu4HI	GCNGC	8 cut(s)	256, 279, 578, 609, 618, 621, 743, 746
FokI	GGATG	3 cut(s)	59, 472, 551
Fsp4HI	GCNGC	8 cut(s)	256, 279, 578, 609, 618, 621, 743, 746
FspBI	CTAG	2 cut(s)	221, 843
GlaI	GCGC	2 cut(s)	106, 108
GluI	GCNGC	8 cut(s)	256, 279, 578, 609, 618, 621, 743, 746
HaeIII	GGCC	3 cut(s)	258, 640, 715
HapII	CCGG	4 cut(s)	294, 454, 712, 837
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	2 cut(s)	107, 109
Hin1II	CATG	5 cut(s)	113, 199, 500, 595, 690
Hin6I	GCGC	2 cut(s)	105, 107
HinP1I	GCGC	2 cut(s)	105, 107
HindIII	AAGCTT	2 cut(s)	284, 652
HinfI	GANTC	3 cut(s)	271, 413, 830
HpaII	CCGG	4 cut(s)	294, 454, 712, 837
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	2 cut(s)	121, 529
Hpy188I	TCNGA	3 cut(s)	90, 808, 872
Hpy188III	TCNNGA	3 cut(s)	294, 358, 467
Hpy8I	GTNNAC	2 cut(s)	121, 529
HpyAV	CCTTC	2 cut(s)	95, 119
HpyCH4III	ACNGT	3 cut(s)	379, 484, 861
HpyCH4V	TGCA	3 cut(s)	234, 389, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 614, 617
HpyF3I	CTNAG	5 cut(s)	210, 400, 468, 660, 807
Hsp92II	CATG	5 cut(s)	113, 199, 500, 595, 690
HspAI	GCGC	2 cut(s)	105, 107
Kpn2I	TCCGGA	1 cut(s)	293
Kzo9I	GATC	5 cut(s)	5, 60, 64, 354, 700
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	5 cut(s)	564, 607, 620, 729, 732
LweI	GCATC	2 cut(s)	37, 729
MaeI	CTAG	2 cut(s)	221, 843
MaeIII	GTNAC	5 cut(s)	205, 484, 679, 749, 855
MalI	GATC	5 cut(s)	7, 62, 66, 356, 702
MboI	GATC	5 cut(s)	5, 60, 64, 354, 700
MboII	GAAGA	2 cut(s)	209, 422
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	2 cut(s)	5, 700
MluCI	AATT	6 cut(s)	40, 159, 349, 546, 729, 866
MlyI	GAGTC	3 cut(s)	265, 422, 839
MmeI	TCCRAC	1 cut(s)	671
MnlI	CCTC	8 cut(s)	10, 84, 164, 630, 655, 691, 764, 798
MroI	TCCGGA	1 cut(s)	293
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	3 cut(s)	437, 620, 782
MspI	CCGG	4 cut(s)	294, 454, 712, 837
MspR9I	CCNGG	1 cut(s)	837
MunI	CAATTG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	231, 614, 617
NciI	CCSGG	1 cut(s)	837
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	5 cut(s)	5, 60, 64, 354, 700
NlaIII	CATG	5 cut(s)	113, 199, 500, 595, 690
NlaIV	GGNNCC	3 cut(s)	465, 702, 771
NmuCI	GTSAC	2 cut(s)	205, 855
NspI	RCATGY	2 cut(s)	113, 595
PaeI	GCATGC	1 cut(s)	113
PauI	GCGCGC	1 cut(s)	105
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	8 cut(s)	257, 280, 579, 610, 619, 622, 744, 747
PleI	GAGTC	3 cut(s)	265, 421, 838
PpsI	GAGTC	3 cut(s)	265, 421, 838
PspN4I	GGNNCC	3 cut(s)	465, 702, 771
PspPI	GGNCC	2 cut(s)	86, 714
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstNI	CAGNNNCTG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	5, 700
PteI	GCGCGC	1 cut(s)	105
RsaI	GTAC	3 cut(s)	122, 819, 841
RsaNI	GTAC	3 cut(s)	121, 818, 840
RseI	CAYNNNNRTG	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	8 cut(s)	256, 279, 578, 609, 618, 621, 743, 746
Sau3AI	GATC	5 cut(s)	5, 60, 64, 354, 700
Sau96I	GGNCC	2 cut(s)	86, 714
SchI	GAGTC	3 cut(s)	265, 422, 839
ScrFI	CCNGG	1 cut(s)	837
SfaNI	GCATC	2 cut(s)	37, 729
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	842
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	6 cut(s)	40, 159, 349, 546, 729, 866
SsiI	CCGC	6 cut(s)	32, 255, 278, 435, 618, 780
SspMI	CTAG	2 cut(s)	221, 843
StyD4I	CCNGG	1 cut(s)	835
StyI	CCWWGG	2 cut(s)	195, 259
TaaI	ACNGT	3 cut(s)	379, 484, 861
TaqI	TCGA	1 cut(s)	63
TasI	AATT	6 cut(s)	40, 159, 349, 546, 729, 866
TatI	WGTACW	1 cut(s)	817
TauI	GCSGC	3 cut(s)	258, 281, 620
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	864
TseFI	GTSAC	2 cut(s)	205, 855
TseI	GCWGC	5 cut(s)	577, 608, 620, 742, 745
Tsp45I	GTSAC	2 cut(s)	205, 855
TspDTI	ATGAA	2 cut(s)	155, 675
TspRI	CASTG	1 cut(s)	864
VpaK11BI	GGWCC	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	2 cut(s)	349, 866
XceI	RCATGY	2 cut(s)	113, 595
XspI	CTAG	2 cut(s)	221, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.