Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Reverse (-)

1181813 .. 1183818

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01980.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGATCTGGTAATGGGGTTTATTCAGTTGCGGATTTCGATTTGGACGCCAAGTGGCTGATCGATCCAAAACATCTTTTTGTTGGTCCGAGGATTGGGGAAGGCGCGCATGCCAAAGTGTACGAAGGAAAATATAAGAATCAAAATGTTGCTGTAAAAATTGTTCATAGAGGAGAAACCCCAGAGCAGATTGCCAAGAGAGAAGCGCGGTTTGCGAGGGAAGTGGCAATGATGTCGAAAGTGCAGCACAAAAACTTAGTGAAGTTCATTGGTGCCTGCAAAGAACCTGTCATGGTCATAGTGACTGAGCTTCTTCTAGGTGGAACTTTGCGCAAATACTTGTTCAGTATGCGGCCAAGGTGTTTGGACACGTGCGTGGCAGTTGGGTTTGCGCTTGATATTGCTCGTGCTATGGAGTGCTTACACTCCCACGGTATCATTCACCGTGACCTGAAACCTGAGAATTTGATCTTGACTGCCGACCAAAAAACAGTCAAACTTGCGGACTTTGGCTTAGCAAGAGAAGAGTCATTGACAGAGATGATGACCGCTGAAACTGGGACATACCGGTGGATGGCTCCTGAGCTTTACAGCACAGTTACATTACGACACGGTGAAAAGAAGCATTACAATCATAAGGTGGACGCTTACAGCTTTGCAATTGTATTGTGGGAACTCATCCATAACAAGCTACCTTTCGAAGGCATGTCAAATTTACAAGCAGCGTATGCAGCTGCTTTTAAGAATGTGAGGCCGAGTGCAGAAAGCCTCCCCGAGGATTTGGCGTTGATTGTAACTTCATGTTGGAAGGAGGATCCCAATGACCGGCCCAACTTCACCCAAATTATACAGATGCTGCTGCATTACCTCTCTACTATTTCGGCACCAGCACCCGCTATCCCCCAACGGATATTCAAATCTGAGAACGCTGTACTCCCACCAGAGTCGCCTGGTACTAGTTCTTTGATGGCTACTCACGACGACTCAGGTGAAACCCCTAAACCCAACACGGACATGGAAGATAAACCTAAAGTTTTTTTCTCCTGCTTTAGCCAGTGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

355

Amino Acids

39.66

Weight (kDa)

6.9

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	272, 883
AccII	CGCG	2 cut(s)	107, 208
AciI	CCGC	6 cut(s)	32, 208, 352, 503, 549, 894
AclWI	GGATC	4 cut(s)	13, 59, 809, 822
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	463, 712
AcvI	CACGTG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	3 cut(s)	122, 933, 955
AfiI	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
AflIII	ACRYGT	1 cut(s)	369
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	1 cut(s)	916
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	1 cut(s)	949
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	5 cut(s)	310, 586, 654, 691, 734
AluI	AGCT	5 cut(s)	310, 586, 654, 691, 734
AlwI	GGATC	4 cut(s)	13, 59, 809, 822
AlwNI	CAGNNNCTG	1 cut(s)	856
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	3 cut(s)	353, 752, 827
ApeKI	GCWGC	6 cut(s)	244, 722, 731, 734, 856, 859
ApoI	RAATTY	2 cut(s)	463, 712
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AsiGI	ACCGGT	1 cut(s)	567
AspLEI	GCGC	5 cut(s)	107, 109, 208, 333, 394
AspS9I	GGNCC	2 cut(s)	86, 828
AsuHPI	GGTGA	4 cut(s)	434, 626, 829, 1001
AsuII	TTCGAA	1 cut(s)	699
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	2 cut(s)	272, 883
BauI	CACGAG	1 cut(s)	405
BbrPI	CACGTG	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	256, 721, 734, 743, 843, 846
BccI	CCATC	2 cut(s)	568, 961
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	1 cut(s)	951
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	2 cut(s)	317, 957
BisI	GCNGC	7 cut(s)	245, 353, 723, 732, 735, 857, 860
BlpI	GCTNAGC	1 cut(s)	514
BlsI	GCNGC	7 cut(s)	246, 354, 724, 733, 736, 858, 861
Bme1390I	CCNGG	1 cut(s)	951
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	86, 828
BmiI	GGNNCC	4 cut(s)	274, 579, 816, 885
BmrFI	CCNGG	1 cut(s)	951
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	843
BmuI	ACTGGG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	699
Bsa29I	ATCGAT	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	89, 356, 430, 774
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
Bse118I	RCCGGY	2 cut(s)	567, 825
Bse1I	ACTGG	2 cut(s)	562, 1054
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	951
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	89, 356, 430, 774
BseGI	GGATG	2 cut(s)	579, 678
BseLI	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	5 cut(s)	297, 450, 573, 912, 999
BseNI	ACTGG	2 cut(s)	562, 1054
BsePI	GCGCGC	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	6 cut(s)	256, 721, 734, 743, 843, 846
BsgI	GTGCAG	2 cut(s)	263, 780
Bsh1236I	CGCG	2 cut(s)	107, 208
BshFI	GGCC	3 cut(s)	355, 754, 829
BshNI	GGYRCC	2 cut(s)	272, 883
BshTI	ACCGGT	1 cut(s)	567
BshVI	ATCGAT	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	2 cut(s)	568, 826
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	5 cut(s)	95, 574, 701, 775, 825
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	3 cut(s)	355, 754, 829
BsoBI	CYCGRG	1 cut(s)	773
Bsp119I	TTCGAA	1 cut(s)	699
Bsp143I	GATC	5 cut(s)	5, 60, 64, 468, 814
Bsp1720I	GCTNAGC	1 cut(s)	514
BspACI	CCGC	6 cut(s)	32, 208, 352, 503, 549, 894
BspANI	GGCC	3 cut(s)	355, 754, 829
BspCNI	CTCAG	5 cut(s)	298, 451, 574, 913, 998
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	2 cut(s)	107, 208
BspLI	GGNNCC	4 cut(s)	274, 579, 816, 885
BspPI	GGATC	4 cut(s)	13, 59, 809, 822
BspT104I	TTCGAA	1 cut(s)	699
BspT107I	GGYRCC	2 cut(s)	272, 883
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	567, 825
BsrI	ACTGG	2 cut(s)	562, 1054
BssAI	RCCGGY	2 cut(s)	567, 825
BssECI	CCNNGG	4 cut(s)	89, 356, 430, 774
BssHII	GCGCGC	1 cut(s)	105
BssMI	GATC	5 cut(s)	5, 60, 64, 468, 814
BssNI	GRCGYC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	356
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	5 cut(s)	434, 446, 493, 598, 614
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	3 cut(s)	107, 111, 277
BstDEI	CTNAG	7 cut(s)	256, 306, 459, 514, 582, 921, 985
BstDSI	CCRYGG	1 cut(s)	430
BstENI	CCTNNNNNAGG	2 cut(s)	699, 773
BstF5I	GGATG	2 cut(s)	579, 678
BstFNI	CGCG	2 cut(s)	107, 208
BstHHI	GCGC	5 cut(s)	107, 109, 208, 333, 394
BstKTI	GATC	5 cut(s)	8, 63, 67, 471, 817
BstMBI	GATC	5 cut(s)	5, 60, 64, 468, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 728, 731
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	2 cut(s)	113, 709
BstSCI	CCNGG	1 cut(s)	949
BstUI	CGCG	2 cut(s)	107, 208
BstV1I	GCAGC	6 cut(s)	256, 721, 734, 743, 843, 846
BstX2I	RGATCY	2 cut(s)	5, 814
BstYI	RGATCY	2 cut(s)	5, 814
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	355, 754, 829
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	579, 678
BtsIMutI	CAGTG	1 cut(s)	1061
Cac8I	GCNNGC	3 cut(s)	107, 111, 277
CaiI	CAGNNNCTG	1 cut(s)	856
CfoI	GCGC	5 cut(s)	107, 109, 208, 333, 394
Cfr10I	RCCGGY	2 cut(s)	567, 825
Cfr13I	GGNCC	2 cut(s)	86, 828
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	2 cut(s)	56, 653
Csp6I	GTAC	3 cut(s)	121, 932, 954
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	5 cut(s)	110, 292, 706, 801, 1015
CviQI	GTAC	3 cut(s)	121, 932, 954
DdeI	CTNAG	7 cut(s)	256, 306, 459, 514, 582, 921, 985
DpnI	GATC	5 cut(s)	7, 62, 66, 470, 816
DpnII	GATC	5 cut(s)	5, 60, 64, 468, 814
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	773
EcoNI	CCTNNNNNAGG	2 cut(s)	699, 773
EcoRII	CCWGG	1 cut(s)	949
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	5 cut(s)	113, 295, 709, 804, 1018
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	5 cut(s)	109, 291, 705, 800, 1014
FauI	CCCGC	1 cut(s)	901
Fnu4HI	GCNGC	7 cut(s)	245, 353, 723, 732, 735, 857, 860
FokI	GGATG	2 cut(s)	586, 665
Fsp4HI	GCNGC	7 cut(s)	245, 353, 723, 732, 735, 857, 860
FspBI	CTAG	2 cut(s)	317, 957
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	5 cut(s)	106, 108, 207, 332, 393
GluI	GCNGC	7 cut(s)	245, 353, 723, 732, 735, 857, 860
HaeIII	GGCC	3 cut(s)	355, 754, 829
HapII	CCGG	2 cut(s)	568, 826
HgaI	GACGC	2 cut(s)	56, 653
HhaI	GCGC	5 cut(s)	107, 109, 208, 333, 394
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	5 cut(s)	113, 295, 709, 804, 1018
Hin6I	GCGC	5 cut(s)	105, 107, 206, 331, 392
HinP1I	GCGC	5 cut(s)	105, 107, 206, 331, 392
HinfI	GANTC	4 cut(s)	139, 527, 944, 983
HpaII	CCGG	2 cut(s)	568, 826
HphI	GGTGA	4 cut(s)	434, 626, 829, 1001
Hpy166II	GTNNAC	2 cut(s)	121, 643
Hpy188I	TCNGA	2 cut(s)	90, 922
Hpy188III	TCNNGA	3 cut(s)	472, 581, 977
Hpy8I	GTNNAC	2 cut(s)	121, 643
Hpy99I	CGWCG	1 cut(s)	983
HpyAV	CCTTC	4 cut(s)	95, 119, 695, 802
HpyCH4III	ACNGT	5 cut(s)	434, 446, 493, 598, 614
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	244, 279, 659, 731, 761, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 728, 731
HpyF3I	CTNAG	7 cut(s)	256, 306, 459, 514, 582, 921, 985
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	113, 295, 709, 804, 1018
HspAI	GCGC	5 cut(s)	105, 107, 206, 331, 392
Kzo9I	GATC	5 cut(s)	5, 60, 64, 468, 814
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	6 cut(s)	256, 721, 734, 743, 843, 846
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	2 cut(s)	317, 957
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	4 cut(s)	301, 446, 598, 793
MalI	GATC	5 cut(s)	7, 62, 66, 470, 816
MboI	GATC	5 cut(s)	5, 60, 64, 468, 814
MboII	GAAGA	3 cut(s)	305, 536, 1031
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	2 cut(s)	5, 814
MluCI	AATT	5 cut(s)	159, 463, 660, 712, 843
MlyI	GAGTC	3 cut(s)	536, 953, 977
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	8 cut(s)	84, 164, 210, 744, 769, 779, 805, 878
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	3 cut(s)	374, 568, 1013
MspA1I	CMGCKG	2 cut(s)	551, 734
MspI	CCGG	2 cut(s)	568, 826
MspR9I	CCNGG	1 cut(s)	951
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	951
MvnI	CGCG	2 cut(s)	107, 208
MwoI	GCNNNNNNNGC	3 cut(s)	212, 728, 731
NdeII	GATC	5 cut(s)	5, 60, 64, 468, 814
NlaIII	CATG	5 cut(s)	113, 295, 709, 804, 1018
NlaIV	GGNNCC	4 cut(s)	274, 579, 816, 885
NmeAIII	GCCGAG	1 cut(s)	780
NmuCI	GTSAC	2 cut(s)	301, 446
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	2 cut(s)	113, 709
NspV	TTCGAA	1 cut(s)	699
OliI	CACNNNNGTG	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	113
PauI	GCGCGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	139
PinAI	ACCGGT	1 cut(s)	567
PkrI	GCNGC	7 cut(s)	246, 354, 724, 733, 736, 858, 861
PleI	GAGTC	3 cut(s)	535, 952, 977
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
PpsI	GAGTC	3 cut(s)	535, 952, 977
Ppu21I	YACGTR	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	949
PspCI	CACGTG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	4 cut(s)	274, 579, 816, 885
PspPI	GGNCC	2 cut(s)	86, 828
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstNI	CAGNNNCTG	1 cut(s)	856
PsuI	RGATCY	2 cut(s)	5, 814
PteI	GCGCGC	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	3 cut(s)	122, 933, 955
RsaNI	GTAC	3 cut(s)	121, 932, 954
RseI	CAYNNNNRTG	3 cut(s)	374, 568, 1013
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	7 cut(s)	245, 353, 723, 732, 735, 857, 860
Sau3AI	GATC	5 cut(s)	5, 60, 64, 468, 814
Sau96I	GGNCC	2 cut(s)	86, 828
SchI	GAGTC	3 cut(s)	536, 953, 977
ScrFI	CCNGG	1 cut(s)	951
SfaNI	GCATC	1 cut(s)	843
SfuI	TTCGAA	1 cut(s)	699
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	3 cut(s)	374, 568, 1013
SpeI	ACTAGT	1 cut(s)	956
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	5 cut(s)	159, 463, 660, 712, 843
SsiI	CCGC	6 cut(s)	32, 208, 352, 503, 549, 894
SspMI	CTAG	2 cut(s)	317, 957
StyD4I	CCNGG	1 cut(s)	949
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	5 cut(s)	434, 446, 493, 598, 614
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	4 cut(s)	39, 63, 236, 699
TasI	AATT	5 cut(s)	159, 463, 660, 712, 843
TatI	WGTACW	1 cut(s)	931
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	1 cut(s)	1061
TseFI	GTSAC	2 cut(s)	301, 446
TseI	GCWGC	6 cut(s)	244, 722, 731, 734, 856, 859
Tsp45I	GTSAC	2 cut(s)	301, 446
TspDTI	ATGAA	3 cut(s)	155, 256, 789
TspGWI	ACGGA	2 cut(s)	922, 1025
TspRI	CASTG	1 cut(s)	1061
VpaK11BI	GGWCC	1 cut(s)	86
XagI	CCTNNNNNAGG	2 cut(s)	699, 773
XapI	RAATTY	2 cut(s)	463, 712
XceI	RCATGY	2 cut(s)	113, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1012
XspI	CTAG	2 cut(s)	317, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.