Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Forward (+)

16236956 .. 16239601

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGATCTGTTACTGGGTTTTACTCAAATGAAGTGTTTGAATTAGATCCTAAATGGGTTGTTGATCCTCAACATCTCTTTGTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAAATCTATGAAGGAAAGTATAAGAACAAAACAGTTGCTATTAAGATTGTTAAAAGAGGAGAATCTCCCGAAGAGATTGCGAAAAGAGAGAGCAGATTTGCAAGAGAGGTCTCTATGTTGTCTAGAGTTCAACACAAAAATTTGGTCAAGTTCATTGGAGCTTGCAAAGAACCAATCATGGTTATAGTCACCGAGCTTTTACTCGGTGGTACATTGCGTAAATACCTTGTTAGCTTGCGTCCAGGGAGTTTGGACATACGTGTAGCTGTTGGATATGCCCTTGACATTGCTCGGGCGATGGAATGCTTACACTCTCATGGAGTCATCCATCGCGATCTCAAACCAGAGAGCTTGATCTTAACTGCGGATTACAAGACTGTTAAACTAGCAGATTTTGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGTACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAGCTTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACCAAAGGATTTAGCAATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCAAACTTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCAACTGAGCTTGTTCCTCCGGCCATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACCAGAATCGCCGGGAACTTGCTCATTGATGACTGTTAGAGACAAAGATCAGATTCCTACCGATGCAAACTCGGCGCAGAATGAAGTTAGAGGAAGCTTCTTCTTCTTCTGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko04932 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map04932 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

353

Amino Acids

39.66

Weight (kDa)

7.63

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 245	7.6e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	30 - 241	4.4e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AciI	CCGC	3 cut(s)	479, 549, 723
AclWI	GGATC	5 cut(s)	13, 41, 59, 809, 822
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	3 cut(s)	325, 562, 595
AfiI	CCNNNNNNNGG	2 cut(s)	95, 701
AflIII	ACRYGT	2 cut(s)	373, 913
AgsI	TTSAA	5 cut(s)	41, 245, 701, 742, 851
AjnI	CCWGG	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	229, 978
AlwI	GGATC	5 cut(s)	13, 41, 59, 809, 822
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	2 cut(s)	405, 581
AoxI	GGCC	2 cut(s)	752, 903
ApeKI	GCWGC	3 cut(s)	731, 734, 1056
ApoI	RAATTY	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
AspLEI	GCGC	2 cut(s)	761, 1021
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	957
AsuHPI	GGTGA	3 cut(s)	110, 295, 626
AvaI	CYCGRG	2 cut(s)	405, 581
AvaII	GGWCC	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	814
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	718, 721, 1043
BccI	CCATC	3 cut(s)	406, 450, 568
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	957
BcoDI	GTCTC	2 cut(s)	229, 978
BfaI	CTAG	3 cut(s)	237, 500, 519
BisI	GCNGC	4 cut(s)	723, 732, 735, 1057
BlsI	GCNGC	4 cut(s)	724, 733, 736, 1058
Bme1390I	CCNGG	2 cut(s)	357, 957
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	2 cut(s)	405, 581
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	3 cut(s)	88, 579, 816
BmrFI	CCNGG	2 cut(s)	357, 957
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	634, 997
BmuI	ACTGGG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	957
BsaAI	YACGTR	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 701
Bse1I	ACTGG	2 cut(s)	19, 562
Bse3DI	GCAATG	3 cut(s)	326, 399, 792
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	438, 579
BseLI	CCNNNNNNNGG	2 cut(s)	95, 701
BseMI	GCAATG	3 cut(s)	326, 399, 792
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	2 cut(s)	19, 562
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	718, 721, 1043
Bsh1236I	CGCG	1 cut(s)	447
Bsh1285I	CGRYCG	1 cut(s)	826
BshFI	GGCC	2 cut(s)	754, 905
BsiEI	CGRYCG	1 cut(s)	826
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	2 cut(s)	405, 581
BsiSI	CCGG	2 cut(s)	902, 956
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	95, 701
BsmAI	GTCTC	2 cut(s)	229, 978
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	2 cut(s)	422, 737
BsnI	GGCC	2 cut(s)	754, 905
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	2 cut(s)	405, 581
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
Bsp68I	TCGCGA	1 cut(s)	447
BspACI	CCGC	3 cut(s)	479, 549, 723
BspANI	GGCC	2 cut(s)	754, 905
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	3 cut(s)	88, 579, 816
BspPI	GGATC	5 cut(s)	13, 41, 59, 809, 822
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	3 cut(s)	326, 399, 792
BsrI	ACTGG	2 cut(s)	19, 562
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	6 cut(s)	148, 493, 593, 598, 937, 979
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	277, 350
BstDEI	CTNAG	1 cut(s)	888
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstF5I	GGATG	2 cut(s)	438, 579
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	2 cut(s)	761, 1021
BstKTI	GATC	8 cut(s)	8, 49, 67, 451, 471, 817, 826, 994
BstMAI	GTCTC	2 cut(s)	229, 978
BstMBI	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
BstMCI	CGRYCG	1 cut(s)	826
BstMWI	GCNNNNNNNGC	3 cut(s)	728, 731, 1016
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	2 cut(s)	355, 955
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	718, 721, 1043
BstX2I	RGATCY	3 cut(s)	5, 46, 814
BstYI	RGATCY	3 cut(s)	5, 46, 814
BsuRI	GGCC	2 cut(s)	754, 905
BtgZI	GCGATG	2 cut(s)	425, 428
BtsCI	GGATG	2 cut(s)	438, 579
BtuMI	TCGCGA	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	277, 350
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	2 cut(s)	761, 1021
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	3 cut(s)	324, 561, 594
CviAII	CATG	5 cut(s)	110, 292, 431, 611, 706
CviQI	GTAC	3 cut(s)	324, 561, 594
DdeI	CTNAG	1 cut(s)	888
DpnI	GATC	8 cut(s)	7, 48, 66, 450, 470, 816, 825, 993
DpnII	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	86
Eco88I	CYCGRG	2 cut(s)	405, 581
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	649
FaeI	CATG	5 cut(s)	113, 295, 434, 614, 709
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	5 cut(s)	109, 291, 430, 610, 705
Fnu4HI	GCNGC	4 cut(s)	723, 732, 735, 1057
FokI	GGATG	2 cut(s)	425, 586
Fsp4HI	GCNGC	4 cut(s)	723, 732, 735, 1057
FspBI	CTAG	3 cut(s)	237, 500, 519
GlaI	GCGC	2 cut(s)	760, 1020
GluI	GCNGC	4 cut(s)	723, 732, 735, 1057
HaeIII	GGCC	2 cut(s)	754, 905
HapII	CCGG	2 cut(s)	902, 956
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	2 cut(s)	761, 1021
Hin1II	CATG	5 cut(s)	113, 295, 434, 614, 709
Hin6I	GCGC	2 cut(s)	759, 1019
HinP1I	GCGC	2 cut(s)	759, 1019
HindIII	AAGCTT	1 cut(s)	1039
HinfI	GANTC	5 cut(s)	176, 435, 527, 950, 997
HpaII	CCGG	2 cut(s)	902, 956
HphI	GGTGA	3 cut(s)	110, 295, 626
Hpy188I	TCNGA	2 cut(s)	928, 996
Hpy188III	TCNNGA	5 cut(s)	182, 237, 446, 581, 742
Hpy99I	CGWCG	1 cut(s)	928
HpyAV	CCTTC	3 cut(s)	95, 119, 695
HpyCH4III	ACNGT	6 cut(s)	148, 493, 593, 598, 937, 979
HpyCH4IV	ACGT	5 cut(s)	373, 602, 747, 862, 913
HpyCH4V	TGCA	5 cut(s)	215, 279, 647, 737, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	728, 731, 1016
HpyF3I	CTNAG	1 cut(s)	888
HpySE526I	ACGT	5 cut(s)	373, 602, 747, 862, 913
Hsp92II	CATG	5 cut(s)	113, 295, 434, 614, 709
HspAI	GCGC	2 cut(s)	759, 1019
Kzo9I	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
LmnI	GCTCC	3 cut(s)	272, 583, 673
LpnPI	CCDG	8 cut(s)	342, 369, 471, 543, 790, 915, 960, 969
Lsp1109I	GCAGC	3 cut(s)	718, 721, 1043
LweI	GCATC	2 cut(s)	634, 997
MaeI	CTAG	3 cut(s)	237, 500, 519
MaeII	ACGT	5 cut(s)	373, 602, 747, 862, 913
MaeIII	GTNAC	4 cut(s)	10, 301, 598, 793
MalI	GATC	8 cut(s)	7, 48, 66, 450, 470, 816, 825, 993
MboI	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
MboII	GAAGA	5 cut(s)	197, 536, 1036, 1039, 1042
MflI	RGATCY	3 cut(s)	5, 46, 814
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	41, 253, 689
MlyI	GAGTC	1 cut(s)	444
MmeI	TCCRAC	3 cut(s)	364, 551, 906
MnlI	CCTC	9 cut(s)	78, 164, 214, 600, 744, 805, 878, 909, 1028
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	6 cut(s)	156, 165, 473, 495, 533, 909
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	2 cut(s)	902, 956
MspR9I	CCNGG	2 cut(s)	357, 957
Mva1269I	GAATGC	2 cut(s)	422, 737
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	728, 731, 1016
NciI	CCSGG	1 cut(s)	957
NdeII	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
NlaIII	CATG	5 cut(s)	113, 295, 434, 614, 709
NlaIV	GGNNCC	3 cut(s)	88, 579, 816
NmeAIII	GCCGAG	1 cut(s)	995
NmuCI	GTSAC	2 cut(s)	301, 598
NruI	TCGCGA	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	709
PctI	GAATGC	2 cut(s)	422, 737
PfeI	GAWTC	4 cut(s)	176, 527, 950, 997
PkrI	GCNGC	4 cut(s)	724, 733, 736, 1058
Ple19I	CGATCG	1 cut(s)	826
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	88, 579, 816
PspPI	GGNCC	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	3 cut(s)	5, 46, 814
PvuI	CGATCG	1 cut(s)	826
RruI	TCGCGA	1 cut(s)	447
RsaI	GTAC	3 cut(s)	325, 562, 595
RsaNI	GTAC	3 cut(s)	324, 561, 594
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	6 cut(s)	156, 165, 473, 495, 533, 909
SatI	GCNGC	4 cut(s)	723, 732, 735, 1057
Sau3AI	GATC	8 cut(s)	5, 46, 64, 448, 468, 814, 823, 991
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	357, 957
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	2 cut(s)	634, 997
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	3 cut(s)	41, 253, 689
SsiI	CCGC	3 cut(s)	479, 549, 723
SspMI	CTAG	3 cut(s)	237, 500, 519
StyD4I	CCNGG	2 cut(s)	355, 955
TaaI	ACNGT	6 cut(s)	148, 493, 593, 598, 937, 979
TaiI	ACGT	5 cut(s)	376, 605, 750, 865, 916
TaqI	TCGA	1 cut(s)	826
TasI	AATT	3 cut(s)	41, 253, 689
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	4 cut(s)	176, 527, 950, 997
Tru1I	TTAA	6 cut(s)	156, 165, 473, 495, 533, 909
Tru9I	TTAA	6 cut(s)	156, 165, 473, 495, 533, 909
TseFI	GTSAC	2 cut(s)	301, 598
TseI	GCWGC	3 cut(s)	731, 734, 1056
Tsp45I	GTSAC	2 cut(s)	301, 598
TspDTI	ATGAA	4 cut(s)	45, 138, 256, 1041
VpaK11BI	GGWCC	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	699
XapI	RAATTY	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	1 cut(s)	709
XspI	CTAG	3 cut(s)	237, 500, 519
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.